Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G09850 436 / 1e-142 D111/G-patch domain-containing protein (.1) AT2G24830 54 / 2e-07 C3HZnF zinc finger (CCCH-type) family protein / D111/G-patch domain-containing protein (.1) AT1G17070 52 / 2e-06 GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain (.1) AT2G42330 45 / 0.0002 GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G113600 [exp] 802 / 0 AT3G09850 524 / 3e-176 D111/G-patch domain-containing protein (.1) Potri.019G043200 [exp] 60 / 5e-09 AT1G17070 794 / 0.0 GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain (.1) Potri.018G016200 [exp] 51 / 2e-06 AT2G24830 421 / 1e-143 zinc finger (CCCH-type) family protein / D111/G-patch domain-containing protein (.1) Potri.013G076000 [exp] 51 / 2e-06 AT1G17070 853 / 0.0 GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036327 [exp] 479 / 3e-159 AT3G09850 468 / 8e-154 D111/G-patch domain-containing protein (.1) Lus10019584 [exp] 391 / 7e-126 AT3G09850 378 / 7e-120 D111/G-patch domain-containing protein (.1) Lus10019073 [exp] 152 / 1e-38 AT5G35160 749 / 0.0 Endomembrane protein 70 protein family (.1.2) Lus10002252 [exp] 56 / 7e-08 AT1G17070 622 / 0.0 GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain (.1) Lus10000930 [exp] 56 / 8e-08 AT1G17070 895 / 0.0 GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain (.1) Lus10020095 [exp] 55 / 1e-07 AT2G24830 471 / 8e-163 zinc finger (CCCH-type) family protein / D111/G-patch domain-containing protein (.1) Lus10026901 [exp] 55 / 2e-07 AT2G24830 471 / 1e-162 zinc finger (CCCH-type) family protein / D111/G-patch domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0449 [poplar] [flax] G-PATCH PF01585 [poplar] [flax] G-patch G-patch domain
Representative CDS sequence Show only first row Show all	>Potri.006G189501.1 pacid=42767170 polypeptide=Potri.006G189501.1.p locus=Potri.006G189501 ID=Potri.006G189501.1.v4.1 annot-version=v4.1 ATGGCAGGAGGAGGTAAGAGAAGATCCAATCACAACAACAAAAACAGAAATAAAAAAATCGACAACAGAAACATCAGAAAAGACAGTGGGGCCAGCAGTA GGAGCAGAAGAAGATCGAAAGAACTTCGAAATTCTCTCTTTGTGGAAGGCGGAGTCTTGGCGGATTGGTCCCCTATCCATTCAGGAAGGAGTAGTAATGT GAAATCGAATTCCAAGTCGGGTTCGAAACCGGGGAATTCTAATCAAGGAAAAGCGTGTTCGGGTTCTAAGAATGCACCGCGTAAAGCCAGTGGAAATCCT TTTGTTTACAACTATCCTTGTTTTGATCTTCAGGAGGGTACCAGCAGAGATATGGATGTGTCGCAACCTATTGTTTTAGTGGATTCCAAGGAGACACATA TTGTTGCTTATTTAGATGAAACACCGACTCTGAAGCCCTGTAATTTGAATTTAACTTACGAATACAGTTCAGATTTTCTGCTTGGCGAGAGCTCACATAG GGAATTGGGGTTCTGTGAGGAATTTGAGGCTACCCCAGGTGCTGAATCATCCTCGAAGCAAATGGAAGAGGAAGAGCAGAAAGGATCTTCTTTTGATTCA TCATCTTCTGAGAAAGAAATGGATTCTGATGAAACTGCTAACTGCAGGGCAGGTGAAGAAATGCTGACTGCAGCATTTTCTCCGAAGAAAAATTCAGCCT TTTTGTCAATTGGAGGCATGAAATTATTCACCCAAGATATTTCTGATGGGGGAAGTGATGGGGAGTCACTCGATGAAAGCTCTGAATCTCAACAAGTTGA ACTGTCTCAAAGTGATGACTCTGAAGACGCATCTAATAGTGAATTTGATGTTGATGATGATGTTGCAGAAGATTACTTGGAAGGCATTGGAGGCAGCTCC AACATATTAGATGTCAAATGGTTGGTAGAAAATGTTCTGGATGATTCAGAAGAGGATAGTTCTTCTAGTGGTTGCTTTGATGAGACTCTAGAGAAGTTGG GTGGGATTGCCCTCCAGGAGGCGTCTAGAAGATATGGTATGAAGAAACCTCAATCAAAAAAGAACCATGCTTCATCTGCCAGAGATGTGTCTCAAGATTT GGATGATTTTATGCATGTAAAGGATCCAAGAACCGTCTCTGCCAAAAAGAAGCATGTTGCACGCTTGCCTTGGTCTTCTCAGAGGAGTCAAAACTCCAGA AATTTTCCTGGTGAAAAAAAGAAGCATCATAAAGAAATGATTGCTGTCAAGCGTCACCAGAGAATGCTGAGCCAGGGAGTTGATCTGGAGAAAATAAATA AGGTTCGACGACTTGCAGCAGTTTATCGCTTGCATAGCGGATCCCAAGGTTCTGGCAAGAAAAGCTTTGTAACAGGGACACGAACACAGCACACATGCAT GCCTTCAGCAAGTGATAAACTTCGTCTAGAAAAGCTGATAGGGGCTGGCGTTGAGGATTCTGATTTTGCTGTTAATGAAGGCTCAAAAACAAAATCAGTT AGTGCAGACAGAAATAGGAAGAAGAAAAGTACAAGGGGGAGTTCTGGGAGAAATGGTTTATACACTAATCAACCAGTGTCATTTGTATCAAGTGGAGTAA TGCAACCTGGAGTCGTTGAGACCACAACACTGGGTGCTCAAGAGATAAATGAAACTGGCGAAAACAAGGATGCCACTAGCTCATCGAAGTATGGTGCATT TGAGGTGCACACTAAAGGATTTGGATCTAAGATGATGGAAAAAATGGGATTTATACAAGGTGGAGGATTGGGAAAAGATGGTCAAGGTATGGCACAACCC ATTGAAGTAATCCAGCGGCCTAAATCACTTGGTTTGGGTGTTGACTTCTCCAACATCAGTGGTGACTCAGTGAAGAATAAACCTCAAAGTCTTGAAACTG GAACTGCAACTGGAAAGTCCGGAAAACATAGTAAAACTCCAAGCTTCGGAGCTTTTGAAAAACACACCAAAGGATTTGGATCCAAGATGATGACCAGGAT GGGTTTTGTTGAAGGCAAGGGCTTGGGTAAAGATTCCCAAGGTATTGTCAACCCTTTAGTTGCTGTTAGGAGGCGAAAAGCACGGGGGTTGGGTGCAAAA AGTTAG
AA sequence Show only first row Show all	>Potri.006G189501.1 pacid=42767170 polypeptide=Potri.006G189501.1.p locus=Potri.006G189501 ID=Potri.006G189501.1.v4.1 annot-version=v4.1 MAGGGKRRSNHNNKNRNKKIDNRNIRKDSGASSRSRRRSKELRNSLFVEGGVLADWSPIHSGRSSNVKSNSKSGSKPGNSNQGKACSGSKNAPRKASGNP FVYNYPCFDLQEGTSRDMDVSQPIVLVDSKETHIVAYLDETPTLKPCNLNLTYEYSSDFLLGESSHRELGFCEEFEATPGAESSSKQMEEEEQKGSSFDS SSSEKEMDSDETANCRAGEEMLTAAFSPKKNSAFLSIGGMKLFTQDISDGGSDGESLDESSESQQVELSQSDDSEDASNSEFDVDDDVAEDYLEGIGGSS NILDVKWLVENVLDDSEEDSSSSGCFDETLEKLGGIALQEASRRYGMKKPQSKKNHASSARDVSQDLDDFMHVKDPRTVSAKKKHVARLPWSSQRSQNSR NFPGEKKKHHKEMIAVKRHQRMLSQGVDLEKINKVRRLAAVYRLHSGSQGSGKKSFVTGTRTQHTCMPSASDKLRLEKLIGAGVEDSDFAVNEGSKTKSV SADRNRKKKSTRGSSGRNGLYTNQPVSFVSSGVMQPGVVETTTLGAQEINETGENKDATSSSKYGAFEVHTKGFGSKMMEKMGFIQGGGLGKDGQGMAQP IEVIQRPKSLGLGVDFSNISGDSVKNKPQSLETGTATGKSGKHSKTPSFGAFEKHTKGFGSKMMTRMGFVEGKGLGKDSQGIVNPLVAVRRRKARGLGAK S

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G09850			D111/G-patch domain-containing...		Potri.006G189501 [exp]	0	1
AT2G06210		VIP6, ELF8	VERNALIZATION INDEPENDENCE 6, ...		Potri.006G143300 [exp]	2.82	0.8791	PAFC901
AT3G24870			Helicase/SANT-associated, DNA ...		Potri.014G189900 [exp]	3.74	0.8865
AT1G10320	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Potri.004G228600 [exp]	4.24	0.8828
AT5G45190			Cyclin family protein (.1.2)		Potri.001G081600 [exp]	7.14	0.8207
AT2G33540		CPL3, ATCPL3	C-terminal domain phosphatase-...		Potri.003G164300 [exp]	7.74	0.8321
AT3G50670		U1SNRNP, U1-70K	U1 small nuclear ribonucleopro...		Potri.005G124300 [exp]	10.95	0.8057
AT1G77300		ASHH2, CCR1, SD...	LAZARUS 2, CAROTENOID CHLOROPL...		Potri.005G182100 [exp]	11.83	0.8356
AT4G24680		MOS1	modifier of snc1 (.1)		Potri.015G079800 [exp]	11.83	0.8519
AT3G14750			unknown protein		Potri.009G076700 [exp]	12.24	0.8126
AT1G79280		AtTPR, NUA	TRANSLOCATED PROMOTER REGION, ...		Potri.008G080900 [exp]	13.41	0.8419

Compare expression of checked genes

Potri.006G189501 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.