Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G35100 326 / 2e-112 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1.2) AT5G13120 75 / 2e-15 Pnsl5, ATCYP20-2 Photosynthetic NDH subcomplex L 5, ARABIDOPSIS THALIANA CYCLOPHILIN 20-2, cyclophilin 20-2 (.1.2) AT2G29960 73 / 2e-15 CYP19-4, ATCYP5, CYP5 CYCLOPHILIN 19-4, ARABIDOPSIS THALIANA CYCLOPHILIN 5, cyclophilin 5 (.1.2) AT5G58710 72 / 1e-14 ROC7 rotamase CYP 7 (.1) AT3G55920 72 / 1e-14 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT3G62030 71 / 3e-14 CYP20-3, ROC4 cyclophilin 20-3, rotamase CYP 4 (.1.2.3) AT4G34960 66 / 1e-12 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT3G56070 65 / 1e-12 ROC2 rotamase cyclophilin 2 (.1.2) AT2G21130 61 / 3e-11 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT4G38740 61 / 3e-11 ROC1 rotamase CYP 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G167700 [exp] 80 / 3e-17 AT5G13120 277 / 5e-94 Photosynthetic NDH subcomplex L 5, ARABIDOPSIS THALIANA CYCLOPHILIN 20-2, cyclophilin 20-2 (.1.2) Potri.002G185200 [exp] 77 / 4e-16 AT3G62030 293 / 2e-100 cyclophilin 20-3, rotamase CYP 4 (.1.2.3) Potri.001G060200 [exp] 76 / 9e-16 AT5G13120 297 / 7e-102 Photosynthetic NDH subcomplex L 5, ARABIDOPSIS THALIANA CYCLOPHILIN 20-2, cyclophilin 20-2 (.1.2) Potri.009G046500 [exp] 74 / 1e-15 AT2G29960 323 / 4e-114 CYCLOPHILIN 19-4, ARABIDOPSIS THALIANA CYCLOPHILIN 5, cyclophilin 5 (.1.2) Potri.010G189000 [exp] 73 / 6e-15 AT3G55920 303 / 4e-105 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.001G251700 [exp] 71 / 2e-14 AT5G58710 313 / 6e-110 rotamase CYP 7 (.1) Potri.012G058700 [exp] 70 / 1e-13 AT1G74070 311 / 2e-105 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.009G132800 [exp] 67 / 5e-13 AT4G34960 328 / 2e-115 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.002G021500 [exp] 63 / 7e-12 AT2G16600 278 / 2e-97 rotamase CYP 3 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019578 [exp] 402 / 2e-142 AT5G35100 320 / 2e-110 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1.2) Lus10040007 [exp] 398 / 5e-141 AT5G35100 325 / 2e-112 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1.2) Lus10040008 [exp] 398 / 7e-141 AT5G35100 326 / 8e-113 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1.2) Lus10011330 [exp] 81 / 8e-18 AT5G13120 336 / 2e-117 Photosynthetic NDH subcomplex L 5, ARABIDOPSIS THALIANA CYCLOPHILIN 20-2, cyclophilin 20-2 (.1.2) Lus10003138 [exp] 81 / 3e-17 AT5G13120 333 / 2e-115 Photosynthetic NDH subcomplex L 5, ARABIDOPSIS THALIANA CYCLOPHILIN 20-2, cyclophilin 20-2 (.1.2) Lus10018238 [exp] 74 / 1e-15 AT2G29960 348 / 4e-124 CYCLOPHILIN 19-4, ARABIDOPSIS THALIANA CYCLOPHILIN 5, cyclophilin 5 (.1.2) Lus10040666 [exp] 74 / 1e-15 AT5G58710 347 / 2e-123 rotamase CYP 7 (.1) Lus10024831 [exp] 74 / 2e-14 AT3G63400 308 / 8e-99 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1.2.3) Lus10018746 [exp] 71 / 2e-13 AT3G63400 306 / 4e-98 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1.2.3) Lus10038315 [exp] 68 / 4e-13 AT2G29960 313 / 1e-109 CYCLOPHILIN 19-4, ARABIDOPSIS THALIANA CYCLOPHILIN 5, cyclophilin 5 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0475 [poplar] [flax] Cyclophil-like PF00160 [poplar] [flax] Pro_isomerase Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
Representative CDS sequence Show only first row Show all	>Potri.006G189900.1 pacid=42768696 polypeptide=Potri.006G189900.1.p locus=Potri.006G189900 ID=Potri.006G189900.1.v4.1 annot-version=v4.1 ATGAACTCCCCTCTAACCCCTCCACCACCACCACCTCTCCTCCCTCACCACCACATCCCTTCTCTCCTCTCTTCTACCACCATCACCCGCCGCTCCCTCC TACTCTCCACCTCCCTCTCCACTCTCTCTCCACCTCGACCAACCCTTGACACCACTATAACAGACCGTGTCTTTCTTGACTTCTCCATCTGCTCCAATTA CTTCCGCCCAGACCGGACCCTCTCCGACACCTTCTCCACCCTCTGCACCGACTCAACTCCCCTAGGGCGCCTAGTTCTTGGCCTCTATGGCCATTTGGTC CCTCTCACTGTCTCCAACTTCAAAACAATGTGCACTTCATACTCTTACAAGAACACTCTAGTCCATAAAATCTTTCCGGGTCAGTTTTTTCTTGCGGGCC GGCAAGGAAGGAGAGAAAAAGGAGAGGTGAAAGTGCCTCAAGATTTGGCAAGAAATATCGAGAGTGTTGATTCTAAGGCTTTTAAGCTAACACATTCAGG ACCTGGGATTCTTTCTTTGTGTTTATCAGAGAATGATGATGAGGATAATATTAAGCTTAATCCTGAATACAGGAATGTTGAGTTCTTGATTACTACTGGA CCTGGTCCTTGCCCTCAGTTGGATTACAAGAACATTGTTTTTGGAGTGGTTCTTGAAGGGTTAGATGTTGTGACATCCATAGCTTCCATCCCGACATACA AACCATCAGATAGAATTCGCCAATTCAATGACTTGGCGGAGTTTCTTGGTGATGAAAGAGCACAAAATGCTCGAACAATATGGAACAAGCCTCTTAAGAC TGTCTATATCAGTGACTGCGGAGAGCTGAAAGTTGCAAAGCCCTCTCTTACTCCTAGCTTACCGTAG
AA sequence Show only first row Show all	>Potri.006G189900.1 pacid=42768696 polypeptide=Potri.006G189900.1.p locus=Potri.006G189900 ID=Potri.006G189900.1.v4.1 annot-version=v4.1 MNSPLTPPPPPPLLPHHHIPSLLSSTTITRRSLLLSTSLSTLSPPRPTLDTTITDRVFLDFSICSNYFRPDRTLSDTFSTLCTDSTPLGRLVLGLYGHLV PLTVSNFKTMCTSYSYKNTLVHKIFPGQFFLAGRQGRREKGEVKVPQDLARNIESVDSKAFKLTHSGPGILSLCLSENDDEDNIKLNPEYRNVEFLITTG PGPCPQLDYKNIVFGVVLEGLDVVTSIASIPTYKPSDRIRQFNDLAEFLGDERAQNARTIWNKPLKTVYISDCGELKVAKPSLTPSLP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G35100			Cyclophilin-like peptidyl-prol...		Potri.006G189900 [exp]	0	1
AT5G20935			unknown protein		Potri.009G155300 [exp]	1.00	0.9905
AT2G34860		EDA3	embryo sac development arrest ...		Potri.001G009800 [exp]	1.41	0.9886
AT3G26040			HXXXD-type acyl-transferase fa...		Potri.011G124300 [exp]	3.87	0.9873
AT4G13220			unknown protein		Potri.002G251800 [exp]	4.89	0.9830
AT1G71500			Rieske (2Fe-2S) domain-contain...		Potri.019G073900 [exp]	5.47	0.9846
AT1G79850		PDE347, CS17, P...	PLASTID RIBOSOMAL SMALL SUBUNI...		Potri.001G184000 [exp]	5.65	0.9854
AT1G42550		PMI1	plastid movement impaired1 (.1...		Potri.002G006100 [exp]	8.24	0.9718
AT3G26040			HXXXD-type acyl-transferase fa...		Potri.011G124184 [exp]	8.36	0.9811
AT3G63140		CSP41A	chloroplast stem-loop binding ...		Potri.005G209500 [exp]	9.94	0.9809
AT1G26761			Arabinanase/levansucrase/inver...		Potri.008G089800 [exp]	10.77	0.9729

Compare expression of checked genes

Potri.006G189900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.