Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G25220 433 / 1e-151 HD KNAT3 KNOTTED1-like homeobox gene 3 (.1.2) AT5G11060 425 / 4e-149 HD KNAT4 KNOTTED1-like homeobox gene 4 (.1) AT4G32040 389 / 4e-135 HD KNAT5 KNOTTED1-like homeobox gene 5 (.1) AT1G62990 332 / 8e-114 HD IXR11, KNAT7 KNOTTED-like homeobox of Arabidopsis thaliana 7 (.1) AT1G70510 109 / 2e-27 HD ATK1, KNAT2 ARABIDOPSIS THALIANA KN 1, KNOTTED-like from Arabidopsis thaliana 2 (.1) AT1G23380 109 / 3e-27 HD KNAT6S, KNAT6L, KNAT6 KNOTTED1-like homeobox gene 6 (.1.2) AT4G08150 107 / 6e-26 HD BP1, KNAT1 BREVIPEDICELLUS 1, BREVIPEDICELLUS, KNOTTED-like from Arabidopsis thaliana (.1) AT1G62360 102 / 2e-24 HD WAM1, WAM, SHL, BUM1, STM WALDMEISTER 1, WALDMEISTER, SHOOT MERISTEMLESS, SHOOTLESS, BUMBERSHOOT 1, BUMBERSHOOT, KNOX/ELK homeobox transcription factor (.1) AT1G75430 57 / 6e-09 HD BLH11 BEL1-like homeodomain 11 (.1) AT5G02030 57 / 6e-09 HD PNY, BLR, BLH9, RPL, HB-6, VAN, LSN VAAMANA, REPLUMLESS, PENNYWISE, LARSON, BELLRINGER, BEL1-LIKE HOMEODOMAIN 9, POX (plant homeobox) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G114100 [exp] 585 / 0 AT5G25220 441 / 6e-155 KNOTTED1-like homeobox gene 3 (.1.2) Potri.006G259400 [exp] 446 / 6e-157 AT5G25220 539 / 0.0 KNOTTED1-like homeobox gene 3 (.1.2) Potri.018G022700 [exp] 437 / 3e-153 AT5G25220 513 / 0.0 KNOTTED1-like homeobox gene 3 (.1.2) Potri.001G112200 [exp] 343 / 3e-118 AT1G62990 466 / 2e-167 KNOTTED-like homeobox of Arabidopsis thaliana 7 (.1) Potri.005G014200 [exp] 123 / 2e-32 AT1G23380 250 / 1e-81 KNOTTED1-like homeobox gene 6 (.1.2) Potri.013G008600 [exp] 122 / 4e-32 AT1G23380 250 / 1e-81 KNOTTED1-like homeobox gene 6 (.1.2) Potri.011G011101 [exp] 118 / 3e-30 AT1G62360 400 / 7e-139 WALDMEISTER 1, WALDMEISTER, SHOOT MERISTEMLESS, SHOOTLESS, BUMBERSHOOT 1, BUMBERSHOOT, KNOX/ELK homeobox transcription factor (.1) Potri.006G270401 [exp] 117 / 5e-30 AT1G62360 399 / 3e-138 WALDMEISTER 1, WALDMEISTER, SHOOT MERISTEMLESS, SHOOTLESS, BUMBERSHOOT 1, BUMBERSHOOT, KNOX/ELK homeobox transcription factor (.1) Potri.010G043500 [exp] 108 / 4e-27 AT1G23380 371 / 3e-129 KNOTTED1-like homeobox gene 6 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006291 [exp] 473 / 3e-167 AT5G25220 489 / 3e-172 KNOTTED1-like homeobox gene 3 (.1.2) Lus10001941 [exp] 387 / 2e-134 AT5G25220 439 / 2e-153 KNOTTED1-like homeobox gene 3 (.1.2) Lus10001934 [exp] 387 / 6e-134 AT5G25220 435 / 9e-152 KNOTTED1-like homeobox gene 3 (.1.2) Lus10003183 [exp] 361 / 2e-126 AT5G25220 381 / 2e-133 KNOTTED1-like homeobox gene 3 (.1.2) Lus10024485 [exp] 290 / 2e-97 AT1G62990 406 / 4e-144 KNOTTED-like homeobox of Arabidopsis thaliana 7 (.1) Lus10017824 [exp] 198 / 7e-63 AT1G62990 269 / 9e-92 KNOTTED-like homeobox of Arabidopsis thaliana 7 (.1) Lus10001195 [exp] 140 / 1e-40 AT1G62990 189 / 2e-60 KNOTTED-like homeobox of Arabidopsis thaliana 7 (.1) Lus10029125 [exp] 110 / 2e-27 AT1G23380 417 / 3e-147 KNOTTED1-like homeobox gene 6 (.1.2) Lus10013037 [exp] 108 / 9e-27 AT1G23380 417 / 4e-147 KNOTTED1-like homeobox gene 6 (.1.2) Lus10030003 [exp] 90 / 8e-20 AT1G62360 315 / 5e-105 WALDMEISTER 1, WALDMEISTER, SHOOT MERISTEMLESS, SHOOTLESS, BUMBERSHOOT 1, BUMBERSHOOT, KNOX/ELK homeobox transcription factor (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03789 [poplar] [flax] ELK ELK domain PF03790 [poplar] [flax] KNOX1 KNOX1 domain PF03791 [poplar] [flax] KNOX2 KNOX2 domain CL0123 [poplar] [flax] HTH PF05920 [poplar] [flax] Homeobox_KN Homeobox KN domain
Representative CDS sequence Show only first row Show all	>Potri.006G190000.1 pacid=42767968 polypeptide=Potri.006G190000.1.p locus=Potri.006G190000 ID=Potri.006G190000.1.v4.1 annot-version=v4.1 ATGGCTTTTCAAGACCACCACCATACACCACAAGAAATGACTTTTCAACTACCACAACACCACCACCTCTCAGCCTCACCTTCCACCGGTCCCACATGGC TAAGCAACGCAGTCCTCCGTAGACACGACGACGTTTTAACCCAAACCCGCATCGAAAAACCAGAAAACAACACCAATAATGGAAGTGAAGAGGAATTGAT AGATTCCGTTAGTGATAATTGGGAGAGAGCTAAATGCAAAGCTGAGATATTAGGGCATCCCTTATATGAACAGTTATTGGCTGCTCACGTGGCTTGTTTA AGGATTGCCACGCCAGTTGACCAGTTGGCTAGGATTGATACACAGTTGGCTCAGTCTCAAGATGTTGTGGCTAAGTATTCTGGTGTTGGTAGGAGCCATG TTGTTGATGAGAAAGAACTTGATCAGTTCATGACACATTACGTTATATTGCTCTGTTCCTTCAAAGACCAATTGCAACAACATGTCCGTGTTCATGCTAT GGAGGCTGTAATGGCATGCTGGGAACTTGAACAGTCTCTACAAAGTTTGACAGGTGTATCTCCAGGGGAAGGCACTGGTGCAACTATGTCTGATGATGAT GACGACCAAGCAGATAGTGATGCCAACTTGTATGATGGAAATCTTGATGGGTTGGATACCATGGGATTTGGTCCTCTAGTTCCCACCGAGACTGAGAGGT CCTTGATGGAGCGTGTAAGGCAAGAATTGAAGCATGAGCTCAAACAGGATTACAAGGAGAAGATTGTGGATATTAGAGAGGAAATTCTACGTAAGAGAAG AGCTGGAAAACTGCCAGGTGATACTACGTCCCTCTTAAAAGCTTGGTGGCAAACACATTCCAAGTGGCCATACCCAACTGAGGAAGACAAAGCAAGATTG GTGCAGGAAACAGGTTTGCAATTAAAGCAGATAAATAATTGGTTCATAAACCAAAGGAAAAGGAACTGGCACAGCAGTCCTTCAGGTTCTACTTCGAAGA GCAAACGAAAGAAGTAA
AA sequence Show only first row Show all	>Potri.006G190000.1 pacid=42767968 polypeptide=Potri.006G190000.1.p locus=Potri.006G190000 ID=Potri.006G190000.1.v4.1 annot-version=v4.1 MAFQDHHHTPQEMTFQLPQHHHLSASPSTGPTWLSNAVLRRHDDVLTQTRIEKPENNTNNGSEEELIDSVSDNWERAKCKAEILGHPLYEQLLAAHVACL RIATPVDQLARIDTQLAQSQDVVAKYSGVGRSHVVDEKELDQFMTHYVILLCSFKDQLQQHVRVHAMEAVMACWELEQSLQSLTGVSPGEGTGATMSDDD DDQADSDANLYDGNLDGLDTMGFGPLVPTETERSLMERVRQELKHELKQDYKEKIVDIREEILRKRRAGKLPGDTTSLLKAWWQTHSKWPYPTEEDKARL VQETGLQLKQINNWFINQRKRNWHSSPSGSTSKSKRKK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G25220	HD	KNAT3	KNOTTED1-like homeobox gene 3 ...		Potri.006G190000 [exp]	0	1
AT5G25220	HD	KNAT3	KNOTTED1-like homeobox gene 3 ...		Potri.018G114100 [exp]	1.00	0.9684
AT5G20230		SAG14, ATBCB	SENESCENCE ASSOCIATED GENE 14,...		Potri.006G067400 [exp]	1.41	0.9501
AT4G18390	TCP	TCP2	TEOSINTE BRANCHED 1, cycloidea...		Potri.004G065800 [exp]	4.89	0.9368
AT2G02070	C2H2ZnF	ATIDD5	indeterminate(ID)-domain 5 (.1...		Potri.010G099100 [exp]	6.00	0.9466
AT2G15580			RING/U-box superfamily protein...		Potri.018G114500 [exp]	7.14	0.9238
AT5G41410	HD	BEL1	BELL 1, POX (plant homeobox) f...		Potri.001G100800 [exp]	8.24	0.9436
AT5G58140		NPL1, PHOT2	NON PHOTOTROPIC HYPOCOTYL 1-LI...		Potri.004G209700 [exp]	12.24	0.9408
AT5G20090			Uncharacterised protein family...		Potri.001G333902 [exp]	13.92	0.9024
AT4G18160		KCO6, ATTPK3, A...	Ca2+ activated outward rectify...		Potri.005G203000 [exp]	17.88	0.9077
AT1G73880		UGT89B1	UDP-glucosyl transferase 89B1 ...		Potri.012G065100 [exp]	18.33	0.9095

Compare expression of checked genes

Potri.006G190000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.