Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G46920 652 / 0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) AT1G04700 469 / 2e-144 PB1 domain-containing protein tyrosine kinase (.1) AT1G16270 466 / 4e-142 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1.2) AT3G24715 463 / 2e-141 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) AT5G57610 459 / 1e-140 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) AT1G79570 463 / 3e-140 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) AT2G35050 456 / 8e-138 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) AT5G49470 203 / 4e-56 PAS domain-containing protein tyrosine kinase family protein (.1.2.3.4) AT1G67890 204 / 4e-54 PAS domain-containing protein tyrosine kinase family protein (.1.2) AT3G06640 194 / 4e-51 PAS domain-containing protein tyrosine kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G114300 [exp] 2364 / 0 AT3G46920 646 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Potri.003G176100 [exp] 461 / 4e-141 AT1G04700 725 / 0.0 PB1 domain-containing protein tyrosine kinase (.1) Potri.006G170700 [exp] 460 / 2e-140 AT5G57610 1087 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Potri.003G110000 [exp] 465 / 8e-140 AT2G35050 672 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Potri.001G123500 [exp] 461 / 4e-139 AT2G35050 660 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Potri.001G052000 [exp] 455 / 8e-139 AT1G04700 721 / 0.0 PB1 domain-containing protein tyrosine kinase (.1) Potri.005G095200 [exp] 455 / 3e-137 AT1G79570 641 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Potri.018G095800 [exp] 447 / 7e-136 AT5G57610 1075 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Potri.007G069500 [exp] 442 / 5e-133 AT1G16270 994 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019577 [exp] 1432 / 0 AT3G46920 606 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10040006 [exp] 838 / 0 AT3G46920 604 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10001315 [exp] 469 / 1e-149 AT5G57610 657 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10038160 [exp] 457 / 5e-149 AT3G24715 527 / 2e-179 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10031749 [exp] 461 / 2e-145 AT1G16270 703 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1.2) Lus10006977 [exp] 469 / 2e-144 AT5G57610 1048 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10031173 [exp] 461 / 7e-141 AT1G79570 963 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10025941 [exp] 374 / 5e-109 AT3G24715 424 / 2e-129 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10016912 [exp] 194 / 6e-51 AT1G67890 848 / 0.0 PAS domain-containing protein tyrosine kinase family protein (.1.2) Lus10037772 [exp] 193 / 2e-50 AT3G06620 919 / 0.0 PAS domain-containing protein tyrosine kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [poplar] [flax] Ubiquitin PF00564 [poplar] [flax] PB1 PB1 domain CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.006G190200.7 pacid=42769011 polypeptide=Potri.006G190200.7.p locus=Potri.006G190200 ID=Potri.006G190200.7.v4.1 annot-version=v4.1 ATGGCTTTTGATCAAACCCCAATACCAAATGATGTAAGGCCATTGAACATAGCTAGAGCCATACCTGAAGAGCCCCGCATTATGGCTGCCATGGCTAGTT CTAGTAGTAGTGCTGTCACCACACCGGCAACAGCTGGTAGAAACCCAGAATTCTTTTCCAACCCAGAAGGCTCTGTACCTGTTATTTATTCGGCATCAGT GTCTGATGCTGGTTTTGTAGGTTTAGGATATGGGAATACTGTTCCTGGGGTTACCCCATGGGCCCCACTCCTGCAGGTGCCGGTTGGGAGTGTGAATGTG GGTGCAAATGGTTCAGGTGTTGCGTTTGGTTATAATCCTAATTTGGGGAACTGGATAGTTGGTAATGCTGTTGATCATGCCGGAAATGAAATGGTGTCAG GATTTGGTTCTTCACCCAATTTTGGGAATCGGATTAATGTTAATGGGAGCAATGAGGCAGTTAATACAGGGTCAGCTTATAACCCCAATTTGGGGAGTTG TGGTAGTGGCAGCGGGGCTGACCATGGGAGTGAAAATGGTAAGGATGATTCGGTGTCGGGAAAGAAAGTAAAGTTTTTGTGTAGTTTTGGGGGGAAGATT TTACCTAGACCAAGTGATGGTATGTTGAGATATGTTGGAGGGCAAACAAGGATTATTAGTGTGAGGAGAGATGTGAGCTTTAATGAGCTACAGCGGAAGA TGACGGACACATATCAGCAGCTTGTTGTTATTAAATACCAGCTTCCTGATGAGGATCTTGATGCACTGGTGTCTGTTTCATGTGCTGATGATCTTGATAA TATGATGGAGGAATATGAGAAGTTGGTTGAGAGGTCTTTGGATGGGTCAGCTAAGTTAAGGGTGTTTTTATTTTCAGATTTACAGCTTGATGCTTCTGGT TCGGTCCAATTTGGGGATTTACATGATAGTGGGCAGAAATATTTTGACGCAGTAAATGGGGTTGTGGATTGTGGTGGTCGTCGTATCGCTAGGAAGGAGA GCAAGGCAAGTGTAAGTTCAACACAAAACTCTGATTGTAGTGGGACTGAGGCTGTTGATTGCTCAGGTCCTGGTCAAGGGGATGTGACTTGGCCACCATC TACCAGCCTGTTATCCCCTAGGGATAATTCGGCAACTTCTCATGATTCTACTCCAAAATTAGTCATTGCAGATACCAAACCCCCACCTTATGCTGGTGCA TCTGCTGTTTCTTTGGTAATTCCAACGGCTAAGTCTGGTCCTCCGCAGACTTCATGTTCTCAGACTGAGGTTGAATTTGAGAGGTCTGCTCCTTTTACTG AAAAACAGCAGCATATGGCCCATGATTTCAAGCAAGTTGGATCAGGCATTCCACCACATGCTCCTCAGATGCAGGTTTATGTAGATCCTAATCAAGAAAT TACAAATCATGCAGATTATAGGCACCTTCCTCGCCAAATGGGTTTTCCAAATAACCATCTGCTGGGAACTTCTGGGTCTGTACTCACCCAACAGCATTTT CATGAGAGTAATGCAGGTGCTACTTCTCTTCAATATGTTCCTGCAGTGCATATGACTATGGCATCCACACCTGTAAGGCCAACTGTGGTTCAACCATTGA TGCAACCCCAAAAAACTCGATTGGAGCACTATCCTGAAGAAAATGCATTTGGAACAAGGATTGTTCAGGTTCTTGACCCAAGCTACAATGTGTATCGGGC TCAACTCCCTCATGCAGTTGTTGGAGGAGGCTATGGCTGGACCCAAGTTCCTCAGCCAGAGCATGTTGCCTTCTCTGATGGGTCAGTGTCTCATCAGCAG GTAATTTTCCCTGAGAAAGTTCCAAGAATGGAGGACTGTTATATGTATCAGAAAGCACTGCCTCATGCACATTCTGATCCTTTGGTACAGGACCCAAGAG AATCTGGAATGATCTATACAAACTCACTTCATCATAGTCTTCTCTTAGAAGATACTATGAAAGCCTGGCCTATGGACAGGGTTTTGATAACTGGTGCCTT GGGAGAACACATTATTGAACAAGGTGCTGGTGCTCAACCTGCAGTTCTTAGTCATATGGATCATCATATTGGAATGCCACAGTCAGAAGCAATTGTGCCC TCTCAGAATCTTGAGTCCCTTAATGAAAATGAGAGAACTTTCTTGAATACTGACAATTCTGATCAGTCTAAGATTTCAGCTCCCTATGGCATGATAGGTT TACCAGGTGATGTACAGTCTCCTTGTGGCATGTCCACAGGTGGAATTCCTGAGTCTCACATAGAAGATTATGTCCAGCAACATTCAGTGCCAATGCAACC CCAGATTTTACTGAGTAAACCTGCTAATACTGATGTCTCTCATGCTGCTGGTGTACCAATTCAAGCTTCTGAACAACTAGTTCATGAATCTCCGAAAGAG TACACTGGCAAGCTTCCTGGTGTTGTTTCCAAAGAATATGCTGTAGATTCTTACATATCTTATGACCAGCTGAGATTAGTTGATGGGATGATGGATGCTC TCCACACACGCCCCCCTGAAATTAATGTTAACAATGATCAGAAAAAGTCACTTGTTGATAAATTTAGAAAGGAAGAAATCTTAGATCATAAAACCCAGAA AATTGCTGGGAGGGAGGTTCTTCTAGATAATACCCTTAGCAAACCTCAGGTGGTTCCCAATTCAAATCATATTAAGCAGTTTAAAGTGTTACCTGCTTCT ACAGGGGTTTCTTACATGCATATTTCCCGACCAATGGAATTACATGAGGTTGCACAACCACCTATTGTGGTTAATAAAGCATCACATCCTCAATTTAAGA TTGAGATTCCTGCCTTGGATTCTGCTGAAGTTAGTTATGGGATCCCTGCATTCTCTGGTGTGGAGTCGGTCTATGTGAATGACAGAATCCCACCTGTTGT TGAATGGAAGAATGATTCACAATTGCATTCAAAGGTTGTCCCTAGTGACGTGGAAGCTTTATCCTCAACTGGTAATACACTATCTTCCCTATCACCATCT AGTGGAGTTGGCAATGCTCAGGACTCCTCGAACTCACTCTTCAGCAGCCAGGATCCTTGGAACTCAAGGCATGATAATCATTTTCCTCCACCTAGACCTA GCAAGATTGCAACAAAAAAAGAAGTCTTTGGTACTAGGGATCCTTTCATTGAGAACCACTCTGGTGAGGTGGACTTAATCACAGGTGTGATGGTGGAGGA TGGAGTTCCCAAGCCCCTGAGTAATTCAAACAAGGATTTAGAGTGTGTTCAATCATCCGAAGGTTCAGCTGAGGAACTCATCAGGAAAGAACTCAAGGCT GTCGCTGAGGGTGTAGCTGCTTCTGTTTTCCAGTCAGCTAATTCTAATCCAGAACCAACAGTGTCAGAAAGCAGTGAATCAGCTTATGAACCAAATCAAG AAAAAGAAGTTTCAAATGAAGGTTTAGAAATAAAGCAAAAAGCTAAATTTGAGGACATGAAGAAAAAACTGCCTGAAAAGGTGAATTTTTGTTTTCCAGT ATCAGAAGGCCTTGGTTGCTTGCAGATTATAAAGAACAGTGACCTTGAAGAGCTGCAGGAATTGGGTTCTGGCACCTTTGGCACCGTTTATCATGGGAAG TGGAGGGGTACTGATGTCGCAATCAAACGAATTAATGATAGGTGTTTCGCTGGAAAACCTTCCGAACAAGAACGCATGAGAGATGACTTCTGGAATGAGG CAATTAAGCTTGCTGATTTGCACCATCCAAATGTGGTTGCCTTTTATGGTGTTGTTCTTGATGGCCCTGGAGGTTCTGTGGCGACAGTGACAGAGTACAT GGTTAATGGTTCTTTAAGAAATGCTTTGCAGAAGAATGAGAGGAGCCTTGACAAGCGTAAGCGTCTCATGATTGCCATGGATGTGGCCTTTGGAATGGAA TACTTGCATGGGAAGAATATTGTGCACTTTGATTTGAAGAGTGACAATTTACTTGTTAATCTTCGAGATCCTCACCGGCCAATATGCAAGGTTGGTGATT TGGGCCTGTCGAAGGTGAAATGCCAAACACTTATCTCAGGTGGTGTGCGGGGAACACTTCCATGGATGGCACCGGAGCTTCTGAATGGAAGCAGTAGTCT TGTCTCTGAGAAGGTCGATGTGTTCTCATTTGGTATGGTGTTGTGGGAACTTCTAACTGGTGAAGAGCCATACGCAGACTTGCACTATGGGGCTATTATA GGTGGTATTGTGAGCAATACCTTGCGGCCACCAGTGCCGGAGACTTGTGACCCAGACTGGAGATCATTGATGGAGAGATGCTGGTCTGCTGAGCCATCAG ACAGACCAAACTTCACTGAAATTGCAAATGAGTTGCGTGCAATGGCAGCAAAGATTCCTTCCAAAGGGCAAGCCCCATAG
AA sequence Show only first row Show all	>Potri.006G190200.7 pacid=42769011 polypeptide=Potri.006G190200.7.p locus=Potri.006G190200 ID=Potri.006G190200.7.v4.1 annot-version=v4.1 MAFDQTPIPNDVRPLNIARAIPEEPRIMAAMASSSSSAVTTPATAGRNPEFFSNPEGSVPVIYSASVSDAGFVGLGYGNTVPGVTPWAPLLQVPVGSVNV GANGSGVAFGYNPNLGNWIVGNAVDHAGNEMVSGFGSSPNFGNRINVNGSNEAVNTGSAYNPNLGSCGSGSGADHGSENGKDDSVSGKKVKFLCSFGGKI LPRPSDGMLRYVGGQTRIISVRRDVSFNELQRKMTDTYQQLVVIKYQLPDEDLDALVSVSCADDLDNMMEEYEKLVERSLDGSAKLRVFLFSDLQLDASG SVQFGDLHDSGQKYFDAVNGVVDCGGRRIARKESKASVSSTQNSDCSGTEAVDCSGPGQGDVTWPPSTSLLSPRDNSATSHDSTPKLVIADTKPPPYAGA SAVSLVIPTAKSGPPQTSCSQTEVEFERSAPFTEKQQHMAHDFKQVGSGIPPHAPQMQVYVDPNQEITNHADYRHLPRQMGFPNNHLLGTSGSVLTQQHF HESNAGATSLQYVPAVHMTMASTPVRPTVVQPLMQPQKTRLEHYPEENAFGTRIVQVLDPSYNVYRAQLPHAVVGGGYGWTQVPQPEHVAFSDGSVSHQQ VIFPEKVPRMEDCYMYQKALPHAHSDPLVQDPRESGMIYTNSLHHSLLLEDTMKAWPMDRVLITGALGEHIIEQGAGAQPAVLSHMDHHIGMPQSEAIVP SQNLESLNENERTFLNTDNSDQSKISAPYGMIGLPGDVQSPCGMSTGGIPESHIEDYVQQHSVPMQPQILLSKPANTDVSHAAGVPIQASEQLVHESPKE YTGKLPGVVSKEYAVDSYISYDQLRLVDGMMDALHTRPPEINVNNDQKKSLVDKFRKEEILDHKTQKIAGREVLLDNTLSKPQVVPNSNHIKQFKVLPAS TGVSYMHISRPMELHEVAQPPIVVNKASHPQFKIEIPALDSAEVSYGIPAFSGVESVYVNDRIPPVVEWKNDSQLHSKVVPSDVEALSSTGNTLSSLSPS SGVGNAQDSSNSLFSSQDPWNSRHDNHFPPPRPSKIATKKEVFGTRDPFIENHSGEVDLITGVMVEDGVPKPLSNSNKDLECVQSSEGSAEELIRKELKA VAEGVAASVFQSANSNPEPTVSESSESAYEPNQEKEVSNEGLEIKQKAKFEDMKKKLPEKVNFCFPVSEGLGCLQIIKNSDLEELQELGSGTFGTVYHGK WRGTDVAIKRINDRCFAGKPSEQERMRDDFWNEAIKLADLHHPNVVAFYGVVLDGPGGSVATVTEYMVNGSLRNALQKNERSLDKRKRLMIAMDVAFGME YLHGKNIVHFDLKSDNLLVNLRDPHRPICKVGDLGLSKVKCQTLISGGVRGTLPWMAPELLNGSSSLVSEKVDVFSFGMVLWELLTGEEPYADLHYGAII GGIVSNTLRPPVPETCDPDWRSLMERCWSAEPSDRPNFTEIANELRAMAAKIPSKGQAP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G46920			Protein kinase superfamily pro...		Potri.006G190200 [exp]	0	1
					Potri.010G186750 [exp]	3.87	0.8172
AT3G54720		MFO1, HPT, COP2...	PRIMORDIA TIMING, Multifolia, ...		Potri.016G064300 [exp]	4.35	0.7849
AT1G13120		EMB1745	embryo defective 1745 (.1)		Potri.008G183500 [exp]	4.35	0.8328
AT2G24100		ASG1	ALTERED SEED GERMINATION 1, un...		Potri.005G014600 [exp]	8.36	0.8101
AT3G26840			Esterase/lipase/thioesterase f...		Potri.017G062200 [exp]	14.73	0.7704
AT1G80490		TPR1	TOPLESS-related 1 (.1.2)		Potri.018G023800 [exp]	17.08	0.8130
AT4G12070			unknown protein		Potri.003G207600 [exp]	17.49	0.7981
AT2G35050			Protein kinase superfamily pro...		Potri.001G123500 [exp]	18.97	0.8105
AT4G31540		ATEXO70G1	exocyst subunit exo70 family p...		Potri.006G272900 [exp]	22.00	0.7820
AT3G54350	FHA	EMB1967	embryo defective 1967, Forkhea...		Potri.005G234300 [exp]	22.58	0.7965

Compare expression of checked genes

Potri.006G190200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.