Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45290 150 / 2e-39 RING/U-box superfamily protein (.1.2) AT1G22670 77 / 1e-14 Protease-associated (PA) RING/U-box zinc finger family protein (.1) AT4G09560 75 / 3e-14 NHL22 Protease-associated (PA) RING/U-box zinc finger family protein (.1) AT1G71980 75 / 5e-14 Protease-associated (PA) RING/U-box zinc finger family protein (.1) AT4G40070 71 / 3e-13 RING/U-box superfamily protein (.1) AT4G26580 69 / 1e-12 RING/U-box superfamily protein (.1.2) AT1G35625 67 / 1e-12 RING/U-box superfamily protein (.1) AT1G72200 69 / 2e-12 RING/U-box superfamily protein (.1) AT5G17600 69 / 2e-12 RING/U-box superfamily protein (.1) AT1G35630 68 / 3e-12 Protease-associated (PA) RING/U-box zinc finger family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G114700 [exp] 691 / 0 AT5G45290 131 / 2e-32 RING/U-box superfamily protein (.1.2) Potri.002G140500 [exp] 290 / 3e-92 AT5G45290 119 / 1e-28 RING/U-box superfamily protein (.1.2) Potri.014G053500 [exp] 280 / 3e-88 AT5G45290 134 / 4e-34 RING/U-box superfamily protein (.1.2) Potri.001G127100 [exp] 162 / 6e-43 AT5G45290 286 / 2e-89 RING/U-box superfamily protein (.1.2) Potri.003G106600 [exp] 157 / 2e-41 AT5G45290 320 / 4e-102 RING/U-box superfamily protein (.1.2) Potri.010G235200 [exp] 77 / 6e-16 AT1G20823 80 / 3e-18 RING/U-box superfamily protein (.1) Potri.008G025300 [exp] 75 / 3e-15 AT4G40070 86 / 7e-20 RING/U-box superfamily protein (.1) Potri.013G073500 [exp] 72 / 1e-13 AT3G03550 262 / 2e-85 RING/U-box superfamily protein (.1) Potri.019G082500 [exp] 73 / 2e-13 AT1G71980 449 / 3e-156 Protease-associated (PA) RING/U-box zinc finger family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001683 [exp] 456 / 1e-156 AT5G45290 155 / 4e-41 RING/U-box superfamily protein (.1.2) Lus10030117 [exp] 427 / 2e-144 AT5G45290 155 / 5e-41 RING/U-box superfamily protein (.1.2) Lus10035680 [exp] 132 / 6e-33 AT5G45290 343 / 1e-111 RING/U-box superfamily protein (.1.2) Lus10013618 [exp] 78 / 1e-15 AT5G17600 220 / 1e-69 RING/U-box superfamily protein (.1) Lus10043426 [exp] 74 / 9e-15 AT4G40070 84 / 5e-19 RING/U-box superfamily protein (.1) Lus10034157 [exp] 74 / 1e-14 AT4G40070 84 / 7e-19 RING/U-box superfamily protein (.1) Lus10006074 [exp] 76 / 3e-14 AT1G71980 466 / 2e-162 Protease-associated (PA) RING/U-box zinc finger family protein (.1) Lus10009438 [exp] 74 / 7e-14 AT1G71980 329 / 1e-108 Protease-associated (PA) RING/U-box zinc finger family protein (.1) Lus10005816 [exp] 70 / 1e-13 AT1G49230 169 / 5e-53 RING/U-box superfamily protein (.1) Lus10014823 [exp] 72 / 7e-13 AT1G71980 488 / 3e-168 Protease-associated (PA) RING/U-box zinc finger family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF13639 [poplar] [flax] zf-RING_2 Ring finger domain
Representative CDS sequence Show only first row Show all	>Potri.006G190500.6 pacid=42769607 polypeptide=Potri.006G190500.6.p locus=Potri.006G190500 ID=Potri.006G190500.6.v4.1 annot-version=v4.1 ATGGGTTCGAGTAGTAGTAGACCGGGGCCACTCTCAACACGGGCCCGACTGAACCGAAGGTCGTCCAGGTTCTTCTCTTCTCTCATCTGTGGTGGCTCCT TTTCTTTTCGCACAGCTCGTCATGAGATGGAAGACTATCCAGATGAAAGTCTGGTGAATTCTCTGGAACAGTGTGGCCCATTCATCAATGAGGTACAGAA TTCTGCTGAGGAATCATCTGTGGTTTCTAGTATGGTAACAGGGTCTAGTAGCTCGGATACTGAAACTGGAGGATCATCTGGAAACAGTATAACAGCTAGT GAGGGAACTTTTGTGAATGATGGTTATAGAAATCTTGACATAAGCTGTCAAGGGAAATGCCTATCTGACAGCAAGGAGTTAGTTGGCCTGGATCAGGTAA GTGATAGTCAAAGTCATGATGAATCGGGTAGGAATAGAAATATTACTGAAGCTAGTACTTCATTTAAAGAACAGCAATCATCAGATCCTGTATCTATGAA TGTTTCAACTAACATGGATGCTGTCAATGGCATTGACAATTCAGAGAACAAGGGTTTTTCTCAGATCTATCCTCATATTATACATCCAAGCAGTTCAGAT CCTTCGAGGCTTGGAGATTCACATTCTAATGATGCCTCTTTTGACAACCATATGGGTGAAGTAACAGACATACCTAATTCCGATTCTGATTCTGTAACTC ATAGGCCTGATGTTCGAGTAACCTTTCGCCCAACGCAAGATGAGTCTATCCAAGATTCAGTATCTTCAGATTTAGGATTTCTTGTGCCCAATAGGGAACA AGACCGGACAGATGGAAGTGTACTCCATGTCGATGTTGTGAGTATCTCTTCCAGCATTTATTCTAGCAGCACTTCAGATACAAGCAATCATGAAGCCAGA AGGAATAGCAGAAGACTGTTTTGGGATGCATTTTCAAGGCGCAGTTTTAGGAGGCATGTTGATTCTCCGACTACTGTTTTCTCGACTGATAATAATGATG ATCTTGAATCCCATGACAGATGGCTTCTTAATTTCAGTGGTGATTTTTTGAACGATGGGATAGACAATGATTCTAGATACTTGGGCAGGAGAATTCACGG ATTGAATGAACGAAGACGACACTCAAGATCTGAGATATGGGAAAGACTTCATGGTGGCCTTGATGAGAATGGTCGACGAACTACCTCTTGTCCTTCTGGA CTCCACCCTGACGGTACATGCTCGTGTGAATCAATCTTGATGACTGAGGAGTTGAATGCTCATCGAAGGATATCACGAATAGTCATGCTTGCTGAAGCTC TGTTTGAGGTTTTGGATGAAATTCATCGTCAGCCTGTGTCGCTCTCTCTATCCATGATGTCGCTCCCTGCCCCTGAATCCATCGTTGATTCTTTCCCTCT TAAGAATCACAAAAAAGTTGACAAAGTTGAGGGCAATGATGAGGATGAACAGTGTTACATTTGCCTGGCCGAGTACGAGGAAGGTGACAAAATAAGAGTT CTTCCCTGCCACCATGAATATCACATGGCTTGTGTGGATAAATGGCTTAAAGAAATACATGGGGTGTGCCCACTTTGTCGAGGAGATGTTCGTGAGGGTG CCAACGAGCCTTCAATCCCAAATCCGGAAATTCCTTCTACTTGA
AA sequence Show only first row Show all	>Potri.006G190500.6 pacid=42769607 polypeptide=Potri.006G190500.6.p locus=Potri.006G190500 ID=Potri.006G190500.6.v4.1 annot-version=v4.1 MGSSSSRPGPLSTRARLNRRSSRFFSSLICGGSFSFRTARHEMEDYPDESLVNSLEQCGPFINEVQNSAEESSVVSSMVTGSSSSDTETGGSSGNSITAS EGTFVNDGYRNLDISCQGKCLSDSKELVGLDQVSDSQSHDESGRNRNITEASTSFKEQQSSDPVSMNVSTNMDAVNGIDNSENKGFSQIYPHIIHPSSSD PSRLGDSHSNDASFDNHMGEVTDIPNSDSDSVTHRPDVRVTFRPTQDESIQDSVSSDLGFLVPNREQDRTDGSVLHVDVVSISSSIYSSSTSDTSNHEAR RNSRRLFWDAFSRRSFRRHVDSPTTVFSTDNNDDLESHDRWLLNFSGDFLNDGIDNDSRYLGRRIHGLNERRRHSRSEIWERLHGGLDENGRRTTSCPSG LHPDGTCSCESILMTEELNAHRRISRIVMLAEALFEVLDEIHRQPVSLSLSMMSLPAPESIVDSFPLKNHKKVDKVEGNDEDEQCYICLAEYEEGDKIRV LPCHHEYHMACVDKWLKEIHGVCPLCRGDVREGANEPSIPNPEIPST

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G45290			RING/U-box superfamily protein...		Potri.006G190500 [exp]	0	1
AT5G03450			Transducin/WD40 repeat-like su...		Potri.010G228000 [exp]	4.47	0.7455
AT1G27650	C3HZnF	ATU2AF35A	U2 snRNP auxiliary factor smal...		Potri.009G149600 [exp]	5.47	0.7610
AT5G13690		NAGLU, CYL1	N-ACETYL-GLUCOSAMINIDASE, CYCL...		Potri.012G075932 [exp]	9.16	0.7163
AT3G29090		PME31, ATPME31	A. THALIANA PECTIN METHYLESTER...		Potri.017G087300 [exp]	10.39	0.6687
AT2G01460			P-loop containing nucleoside t...		Potri.008G130200 [exp]	12.08	0.7532
AT3G27670		RST1	RESURRECTION1, ARM repeat supe...		Potri.001G346000 [exp]	14.17	0.7467
AT1G78070			Transducin/WD40 repeat-like su...		Potri.002G094100 [exp]	15.00	0.7206
AT5G42400		SDG25, ATXR7	ARABIDOPSIS TRITHORAX-RELATED7...		Potri.002G001000 [exp]	18.97	0.7433
AT5G28530	FAR1_related	FRS10	FAR1-related sequence 10 (.1)		Potri.014G167000 [exp]	19.05	0.7165
AT3G03300		ATDCL2, DCL2	dicer-like 2 (.1.2.3)		Potri.008G075900 [exp]	21.56	0.6924	DCL903

Compare expression of checked genes

Potri.006G190500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.