Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06220 1742 / 0 GFA1, CLO, MEE5 MATERNAL EFFECT EMBRYO ARREST 5, GAMETOPHYTE FACTOR 1, CLOTHO, Ribosomal protein S5/Elongation factor G/III/V family protein (.1.2) AT5G25230 1666 / 0 Ribosomal protein S5/Elongation factor G/III/V family protein (.1) AT1G56070 615 / 0 LOS1, AT1G56075.1 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1) AT3G12915 590 / 0 Ribosomal protein S5/Elongation factor G/III/V family protein (.1.2) AT3G22980 252 / 9e-70 Ribosomal protein S5/Elongation factor G/III/V family protein (.1) AT2G45030 123 / 2e-28 Translation elongation factor EFG/EF2 protein (.1) AT1G45332 122 / 3e-28 Translation elongation factor EFG/EF2 protein (.1) AT5G39900 95 / 8e-20 Small GTP-binding protein (.1) AT5G08650 91 / 1e-18 Small GTP-binding protein (.1) AT5G13650 89 / 1e-17 SVR3 SUPPRESSOR OF VARIEGATION 3, elongation factor family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G114900 [exp] 1923 / 0 AT1G06220 1710 / 0.0 MATERNAL EFFECT EMBRYO ARREST 5, GAMETOPHYTE FACTOR 1, CLOTHO, Ribosomal protein S5/Elongation factor G/III/V family protein (.1.2) Potri.007G065700 [exp] 610 / 0 AT1G56070 1623 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1) Potri.007G065600 [exp] 610 / 0 AT1G56070 1620 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1) Potri.005G098100 [exp] 603 / 0 AT1G56070 1648 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1) Potri.009G152500 [exp] 266 / 2e-74 AT3G22980 1521 / 0.0 Ribosomal protein S5/Elongation factor G/III/V family protein (.1) Potri.003G113500 [exp] 114 / 2e-25 AT1G62750 1310 / 0.0 SNOWY COTYLEDON 1, Translation elongation factor EFG/EF2 protein (.1) Potri.006G053000 [exp] 90 / 3e-18 AT5G13650 1123 / 0.0 SUPPRESSOR OF VARIEGATION 3, elongation factor family protein (.1.2) Potri.017G079800 [exp] 87 / 4e-17 AT5G39900 999 / 0.0 Small GTP-binding protein (.1) Potri.001G305300 [exp] 87 / 4e-17 AT5G08650 1063 / 0.0 Small GTP-binding protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034111 [exp] 1806 / 0 AT1G06220 1761 / 0.0 MATERNAL EFFECT EMBRYO ARREST 5, GAMETOPHYTE FACTOR 1, CLOTHO, Ribosomal protein S5/Elongation factor G/III/V family protein (.1.2) Lus10031129 [exp] 1800 / 0 AT1G06220 1751 / 0.0 MATERNAL EFFECT EMBRYO ARREST 5, GAMETOPHYTE FACTOR 1, CLOTHO, Ribosomal protein S5/Elongation factor G/III/V family protein (.1.2) Lus10043477 [exp] 848 / 0 AT1G06220 828 / 0.0 MATERNAL EFFECT EMBRYO ARREST 5, GAMETOPHYTE FACTOR 1, CLOTHO, Ribosomal protein S5/Elongation factor G/III/V family protein (.1.2) Lus10043478 [exp] 740 / 0 AT1G06220 729 / 0.0 MATERNAL EFFECT EMBRYO ARREST 5, GAMETOPHYTE FACTOR 1, CLOTHO, Ribosomal protein S5/Elongation factor G/III/V family protein (.1.2) Lus10031201 [exp] 506 / 1e-165 AT1G56070 1415 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1) Lus10031763 [exp] 498 / 5e-163 AT1G56070 1418 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1) Lus10031186 [exp] 384 / 1e-123 AT1G56070 902 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1) Lus10004749 [exp] 375 / 4e-114 AT3G22980 1376 / 0.0 Ribosomal protein S5/Elongation factor G/III/V family protein (.1) Lus10031779 [exp] 336 / 1e-101 AT3G12915 760 / 0.0 Ribosomal protein S5/Elongation factor G/III/V family protein (.1.2) Lus10031185 [exp] 159 / 3e-43 AT1G56070 504 / 6e-175 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00009 [poplar] [flax] GTP_EFTU Elongation factor Tu GTP binding domain CL0575 [poplar] [flax] EFTPs PF03144 [poplar] [flax] GTP_EFTU_D2 Elongation factor Tu domain 2 CL0575 [poplar] [flax] PF16004 [poplar] [flax] EFTUD2 116 kDa U5 small nuclear ribonucleoprotein component N-terminus
Representative CDS sequence Show only first row Show all	>Potri.006G190600.2 pacid=42767217 polypeptide=Potri.006G190602.1.p locus=Potri.006G190600 ID=Potri.006G190600.2.v4.1 annot-version=v4.1 ATGGACGACAATTTATATGATGAGTTTGGGAACTACATTGGTCCGGAAATAGAGTCTGACCGAGAGAGTGATGGAGAGGAAGAAGATGAAGAACTCCCAG ACAAGCCTCATGAGGATGAGGAGGAATCTGATGGTGAGGACGCAGTTCATGCTTCCAATGGGTGGCTTGCTGCTTCTGATGATGTTGATATGGATAACCA AGTTGTTCTTGCTGAGGACAAGAAGTACTACCCAACTGCGGAGGAGGTTTATGGTCCAGGTGTTGAAACGTTGGTTAATGATGAAGACGAGCAGCCTCTT GAGCAACCAATAATTAAGCCTGTTAGGAACATCAAGTTTGAGGTTGGGGTTAAGGACTCTTCAACTTATGTTTCCAGCCAGTTTCTTGTTGGTCTCATGT CAAATCCCTCTTTGGTTCGTAATGTTGCCCTTGTGGGCCATCTACAACATGGGAAGACAGTTTTTATGGACATGTTGGTTGAGCAAACGCATCATATGCC CACTTTTGATTTAAATAGTGAGAAGCATATAAGATACACAGATACAAGGATCGATGAGCAAGAAAGAAGGATATCTATCAAGGCAGTTCCAATGTCACTC GTTCTTGAGGATAGCAATTCAAAGTCGTACCTCTGTAACATCATGGACACCCCTGGTCATGTCAACTTCTCTGATGAAATGACTGCTGCACTCAGGCTGG CTGATGGTGCCGTGTTGATTGTGGATGCAGCTGAAGGAGTGATGGTAAACACAGAGAGGGCCATACGCCACGCAATTCAGGAACAGCTGCCTATTGTTGT TGTGATCAATAAGGTTGACAGGCTCATAACAGAGCTTAAATTGCCCCCAAAGGATGCTTACCATAAGCTAAGACATACCATAGAAGTCATTAATAACCAT ATATCTGCTGTCTCTTTGACTGCTGGAAATGTCCAAGTTATAGATCCAGCTGCTGGAAATGTTTGTTTTGCTGGTGCAACCGCAGGATGGTCCTTCACTT TGCATTCCTTTGCCAGATTGTATCTCAAACTCCATGGTATCCCATTTGATGCTGATAAGTTTGCGTCTAGTCTCTGGGGCGATATGTATTATCATCCTGA GGACAGGGCTTTCAAGAAGAAACCTCCTGCTAGTGGAGCAGAAAGATCGTTTGTTCAATTTGTGCTGGAACCTCTTTACAAAATATACAGCCAAGTGATT GGAGAACATAAAAAAAGTGTTGAGTCTACTCTTGCTGAGTTTGGCGTTACTCTTCCTAATTCAGCTTATAAATTAAATGTCAGACCTTTGCTAAGATTGG CTTGCAGCCAAGTTTTTGGCTCAGCCTTAGGCTTCACTGATATGCTTGTTAAGCATATACCTTCGGCTAGGGATGCTGCTGCTAGAAAGGTTGATCATAC CTATACTGGGCCCAAAGACTCAATGATTTACCATGCCATGGTAGATTGTGATCCTTCTGGCCCCTTAATGGTTAATGTGACCAAACTGTATCCTAAGTCA GATTGCAGTTCCTTTGATGCTTTTGGTAGGGTTTATAGTGGTAAAATTATGACAGGGCAGTCTGTAAAAGTTTTGGGAGAAGGCTATTCACCAGAGGATG AGGAGGACATGACAGTCAAAGAAGTGACCAAACTATGGGTATATCAAGCTCGGTATAGGTTACCCATAAGCATGGCACCTCCTGGTTCCTGGGTTCTCAT TGAAGGTGTGGATGCTTCAATTATGAAAACTGCAACTCTCAGTAATGTGAATTATAATGAAGAAGATATATACATATTTCGACCTCTTCAGTTCAATACT CTCCCAGTAGTTAAAACCGCCACTGAGCCTCTAAATCCAAGCGAGTTGCCCAAGATGGTGGAGGGTCTTAGGAAGATCAGTAAAAGCTATCCTCTGGCCA TAACTAAAGTCGAGGAGTCTGGGGAGCACACTATTCTTGGTACTGGAGAGTTGTACTTGGATTCTATTATGAAGGACCTTAGAGAGCTCTATTCTGAAGT GGAAGTGAAGGTAGCCGATCCTGTTGTCTCATTCTGTGAAACAGTGGTGGAGTCTTCATCAATGAAATGCTTTGCTGAAACACCCAACAAGAAAAATAAA ATAACCATGATAGCTGAGCCATTGGAAAAAGGGCTTGCAGAAGACATTGAGGATGGTGTTGTAAGCATTGACTGGAACCGGAAGGCTCTAGGTGACTTCT TCAAGACAAAATATGATTGGGATTTGCTTGCAGCACGATCCATATGGGCTTTTGGCCCTGATAAGCAGGGACCTAACATTTTGCTAGATGACACGCTTCC TACTGAAGTGGACAAGGGATTACTGGGTGCCGTGAAGGATTCTATTGTTCAAGGGTTTCAGTGGGGTGCACGAGAAGGACCACTTTGTGATGAACCAATC AGAAATGTTAAGTTCAAGATAGTTGATGCTAGGATTGCGCCTGAACCACTTCATCGCGGATCTGGTCAAATAATTCCAACAGCTCGGCGTGTGGCCTATT CAGCTTTTCTCATGGCAACCCCAAGGCTCATGGAACCAGTATATTATGTGGAGATACAAACACCAATTGACTGCCTCACTGCAATTTATACAGTGTTATC TCGCAGACGTGGGCATGTTACAGCCGATGTTCCTCAGCCTGGGACTCCTGCTTATATTGTTAAGGCATTTTTACCAGTCATAGAATCATTTGGTTTTGAG ACGGACTTGAGGTACCATACCCAAGGGCAAGCATTTTCCCTATCAGTGTTTGATCATTGGGCTATAGTCCCTGGAGATCCCCTTGATAAGAGCATTGTTC TGAGGCCACTTGAGCCTGCACCAATCCAGCACCTTGCCCGTGAATTTATGGTGAAGACAAGGCGTCGCAAGGGAATGAGTGAAGATGTGAGCATTAACAA GTTCTTCGACGAAGCTATGGTGGTTGAGCTGGCTCAGCAAGCAGCAGATATATTCATCAACAAATGA
AA sequence Show only first row Show all	>Potri.006G190600.2 pacid=42767217 polypeptide=Potri.006G190602.1.p locus=Potri.006G190600 ID=Potri.006G190600.2.v4.1 annot-version=v4.1 MDDNLYDEFGNYIGPEIESDRESDGEEEDEELPDKPHEDEEESDGEDAVHASNGWLAASDDVDMDNQVVLAEDKKYYPTAEEVYGPGVETLVNDEDEQPL EQPIIKPVRNIKFEVGVKDSSTYVSSQFLVGLMSNPSLVRNVALVGHLQHGKTVFMDMLVEQTHHMPTFDLNSEKHIRYTDTRIDEQERRISIKAVPMSL VLEDSNSKSYLCNIMDTPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQEQLPIVVVINKVDRLITELKLPPKDAYHKLRHTIEVINNH ISAVSLTAGNVQVIDPAAGNVCFAGATAGWSFTLHSFARLYLKLHGIPFDADKFASSLWGDMYYHPEDRAFKKKPPASGAERSFVQFVLEPLYKIYSQVI GEHKKSVESTLAEFGVTLPNSAYKLNVRPLLRLACSQVFGSALGFTDMLVKHIPSARDAAARKVDHTYTGPKDSMIYHAMVDCDPSGPLMVNVTKLYPKS DCSSFDAFGRVYSGKIMTGQSVKVLGEGYSPEDEEDMTVKEVTKLWVYQARYRLPISMAPPGSWVLIEGVDASIMKTATLSNVNYNEEDIYIFRPLQFNT LPVVKTATEPLNPSELPKMVEGLRKISKSYPLAITKVEESGEHTILGTGELYLDSIMKDLRELYSEVEVKVADPVVSFCETVVESSSMKCFAETPNKKNK ITMIAEPLEKGLAEDIEDGVVSIDWNRKALGDFFKTKYDWDLLAARSIWAFGPDKQGPNILLDDTLPTEVDKGLLGAVKDSIVQGFQWGAREGPLCDEPI RNVKFKIVDARIAPEPLHRGSGQIIPTARRVAYSAFLMATPRLMEPVYYVEIQTPIDCLTAIYTVLSRRRGHVTADVPQPGTPAYIVKAFLPVIESFGFE TDLRYHTQGQAFSLSVFDHWAIVPGDPLDKSIVLRPLEPAPIQHLAREFMVKTRRRKGMSEDVSINKFFDEAMVVELAQQAADIFINK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G06220		GFA1, CLO, MEE5	MATERNAL EFFECT EMBRYO ARREST ...		Potri.006G190600 [exp]	0	1
AT5G40770		ATPHB3	prohibitin 3 (.1)		Potri.017G065800 [exp]	9.69	0.8416	PHB3.1
AT3G02530			TCP-1/cpn60 chaperonin family ...		Potri.004G101500 [exp]	14.00	0.8245
AT4G02930			GTP binding Elongation factor ...		Potri.014G138100 [exp]	18.33	0.8302	TUFA.4
AT3G18190			TCP-1/cpn60 chaperonin family ...		Potri.015G042600 [exp]	19.41	0.7871
AT4G18030			S-adenosyl-L-methionine-depend...		Potri.001G146400 [exp]	21.81	0.7612
AT5G35530			Ribosomal protein S3 family pr...		Potri.015G071700 [exp]	24.67	0.8361
AT3G20000		TOM40	translocase of the outer mitoc...		Potri.007G000200 [exp]	24.79	0.8317	Pt-TOM40.1
AT3G55605			Mitochondrial glycoprotein fam...		Potri.010G198500 [exp]	30.62	0.8008
AT2G19080			metaxin-related (.1)		Potri.006G077100 [exp]	34.20	0.8028
AT3G19760		EIF4A-III	eukaryotic initiation factor 4...		Potri.007G070000 [exp]	39.19	0.7725

Compare expression of checked genes

Potri.006G190600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.