Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06820 696 / 0 SRF2 STRUBBELIG-receptor family 2 (.1) AT1G53730 441 / 3e-145 SRF6 STRUBBELIG-receptor family 6 (.1.2) AT4G22130 311 / 2e-97 SRF8 STRUBBELIG-receptor family 8 (.1.2) AT3G14350 285 / 5e-86 SRF7 STRUBBELIG-receptor family 7 (.1.2.3) AT1G78980 261 / 4e-77 SRF5 STRUBBELIG-receptor family 5 (.1) AT4G03390 242 / 2e-69 SRF3 STRUBBELIG-receptor family 3 (.1) AT3G13065 239 / 4e-69 SRF4 STRUBBELIG-receptor family 4 (.1) AT2G20850 241 / 7e-69 SRF1 STRUBBELIG-receptor family 1 (.1) AT1G11130 234 / 2e-66 SRF9, SCM, SUB STRUBBELIG-RECEPTOR FAMILY 9, SCRAMBLED, Leucine-rich repeat protein kinase family protein (.1) AT1G20650 207 / 5e-60 ASG5 ALTERED SEED GERMINATION 5, Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G005301 [exp] 318 / 3e-98 AT4G22130 906 / 0.0 STRUBBELIG-receptor family 8 (.1.2) Potri.011G010500 [exp] 316 / 2e-97 AT4G22130 916 / 0.0 STRUBBELIG-receptor family 8 (.1.2) Potri.001G161600 [exp] 290 / 1e-87 AT1G53730 590 / 0.0 STRUBBELIG-receptor family 6 (.1.2) Potri.003G073700 [exp] 280 / 5e-84 AT1G53730 575 / 0.0 STRUBBELIG-receptor family 6 (.1.2) Potri.014G001200 [exp] 277 / 8e-83 AT1G78980 817 / 0.0 STRUBBELIG-receptor family 5 (.1) Potri.007G002600 [exp] 265 / 1e-78 AT1G78980 499 / 1e-168 STRUBBELIG-receptor family 5 (.1) Potri.011G045600 [exp] 255 / 2e-74 AT4G03390 617 / 0.0 STRUBBELIG-receptor family 3 (.1) Potri.019G103900 [exp] 253 / 3e-73 AT4G03390 801 / 0.0 STRUBBELIG-receptor family 3 (.1) Potri.004G037000 [exp] 252 / 3e-73 AT4G03390 645 / 0.0 STRUBBELIG-receptor family 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016276 [exp] 767 / 0 AT5G06820 669 / 0.0 STRUBBELIG-receptor family 2 (.1) Lus10012022 [exp] 765 / 0 AT5G06820 659 / 0.0 STRUBBELIG-receptor family 2 (.1) Lus10015549 [exp] 314 / 7e-95 AT4G22130 972 / 0.0 STRUBBELIG-receptor family 8 (.1.2) Lus10020030 [exp] 303 / 1e-92 AT4G22130 947 / 0.0 STRUBBELIG-receptor family 8 (.1.2) Lus10037464 [exp] 298 / 5e-91 AT1G53730 824 / 0.0 STRUBBELIG-receptor family 6 (.1.2) Lus10003926 [exp] 299 / 6e-91 AT1G53730 885 / 0.0 STRUBBELIG-receptor family 6 (.1.2) Lus10033333 [exp] 271 / 9e-81 AT1G78980 803 / 0.0 STRUBBELIG-receptor family 5 (.1) Lus10034790 [exp] 266 / 3e-79 AT1G78980 768 / 0.0 STRUBBELIG-receptor family 5 (.1) Lus10018459 [exp] 254 / 1e-74 AT4G03390 594 / 0.0 STRUBBELIG-receptor family 3 (.1) Lus10011223 [exp] 250 / 6e-73 AT4G03390 591 / 0.0 STRUBBELIG-receptor family 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0016 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.006G190700.2 pacid=42770426 polypeptide=Potri.006G190700.2.p locus=Potri.006G190700 ID=Potri.006G190700.2.v4.1 annot-version=v4.1 ATGGCGAGCCAGAGACTGCATTGGGGTTTTGTTGTGATTGTGTTCTTGGCGATTCTTTCTTTTCAAGCTTCTGCTTCTACTGATGCTTCTGATGTCATAG CACTTCAAGATCTATACAAGGCCCTGAGTAACCCCCCACAGCTAAAGGAATGGAGATTGGATGGAGGAGATCCATGTGGGGAATCATGGACTGGAGTCTC ATGTGCTGGGCCATCTGTAATATACCTTAAACTTCAAGGACTGAACCTCAGTGGGTTCCTTGGAACCCAGCTGCATTATCTCCATAGCTTGAAGCATCTG GATGTTAGCTCCAATTATATTGTGGGTGAAATACCATATGCTTTGCCACCTAATGCCACTCATATAAACTTAGCATACAACTACTTGAGCAAAAGTATAC CCCTTTCCTTACCAGGTGTAGAGTTACTTCGGCATCTGAATTTGAGTCACAATTCACTGTCTGGACCCATTGGCAATGTGTTTACTGGCCTACAGAACCT AAAAGAGATCGACCTGTCATCCAATAACTTCACTGGAGATTTGCCAAGTTCTTTTGGATCTCTGACAAATCTTACCAAATTGTTCTTACAGAACAACCAG TTCACTGGCTCAGTTGTCTACCTGGCTAATCTTTCACTAACTGACCTGAATATCCAAACCAATCACTTCAGTGGTGTAATTCCAACTCAATTTCAGTTAA TACCCGATCTATGGATTGACGGAAATCAGTTCCACATAGGGGCAAATTATCCTCCCTGGAATTATCCTTCGGATAATGGATCCATTGGGCAAACTTTTAA TGGTCCCCCAACCACCGAGTCAAGTGCCATGGAGAATTATATCAAGGTAAATGGACACAAGAAGAAAAGGTTGGGCCCTGGTGGAATAGTTTTTGCAGTG GGTGTGGTAGCTCTGGTGGTGACTTGCGCTGCAATCTTCATTGCAATGCGTATCAAGCGATCCCGCCATTCTTGTTCTGTCAGGACAACTAGAGTAGCAT CTGAAGTGAACCCACAACAATTGCCTCCCCGATCTCCTTCGCTTCTTTTCCCAACGCATATCCCTCGTATTTGCCACAACAGAAATGAAAAAAATTCAGC AAGAAAAAGTTTCTTGATATATAAAGCCCCAGTAAGTGCAAACATTTACACTCTGACAGAACTGCAGCTGGCAACAAACAACTTCGGTGAAGAGAATCTT CTTGGAGAGGGGTCTCTTGGTTCTGTTTACAGAGCCGAATTCCAAAATGGCCAAATATTTGTTGTGAAAAACATCAATATGGTATCACTGTCATTCCAAG AAGAAGAACAATTCTTGGATGTGATTTGGACTGCTTCCCGACTGAGGCATCCAAATATTGTAACACTCATTGGCTACTGTGTAGAACATGGGCAGCATCT CCTCGTGTATGATTACATCAGAGATTTGTCTCTTCATGATGTTCTGCATAGTGATGGGTACAAGCCACTGTCATGGAACATTCGTCTCAATATTGCGCTT GGTGTTGCTCGGGCTTTGGAGTTCTTGCACTCCACATTCTCGCCTCCTATTTCTCATGGCAATGTAAAGGCTGCCAATGTCTTACTTGATAAAGAGCTTA TGCCTCGTCTCTGTGACACCGGACTAGCTATTTTGAGGCCACTGACAAGCAACAGTGTTAAAATAAAGGCTTCTGAAATTGCTATTGGTGACACGGGCTA TATTGCTCCTGAACATGGGGAACCAGTAACTGACAACACCAAGAGTGACATTTATGCGTTTGGAGTGTTGCTTTTGGAGCTATTAACTGGAAGGAGACCT TTTGATGGCTCAAGACCAAGAGCGGAGCAATCTTTGGTGAAATGGGCTTCGTCTCGGCTGCATGACAATGAGAGTTTGATTCAGATGGTTGACCCGGGCA TCAAAAGAACACTCCCCTCCAAGACTCTATCTCGGTTTGCAGACGTTGTCTTGCTCTGCATTCAGCCTGACAAGTTCTTCCGTCCACCTATGTCTGAAAT TGTTTCATCACTGACAAGTGTGCTGCGAAAATTCACTGCTGCAAAAAGTGGTGCCATGGAAGGTGCTGAAGTTGACCCTTTTGAGAGGTCTTTTTGTTCG ACTTATAGTCGCTTCATAACCTCACCAACACCGAGTTACATCTCTGTTTGA
AA sequence Show only first row Show all	>Potri.006G190700.2 pacid=42770426 polypeptide=Potri.006G190700.2.p locus=Potri.006G190700 ID=Potri.006G190700.2.v4.1 annot-version=v4.1 MASQRLHWGFVVIVFLAILSFQASASTDASDVIALQDLYKALSNPPQLKEWRLDGGDPCGESWTGVSCAGPSVIYLKLQGLNLSGFLGTQLHYLHSLKHL DVSSNYIVGEIPYALPPNATHINLAYNYLSKSIPLSLPGVELLRHLNLSHNSLSGPIGNVFTGLQNLKEIDLSSNNFTGDLPSSFGSLTNLTKLFLQNNQ FTGSVVYLANLSLTDLNIQTNHFSGVIPTQFQLIPDLWIDGNQFHIGANYPPWNYPSDNGSIGQTFNGPPTTESSAMENYIKVNGHKKKRLGPGGIVFAV GVVALVVTCAAIFIAMRIKRSRHSCSVRTTRVASEVNPQQLPPRSPSLLFPTHIPRICHNRNEKNSARKSFLIYKAPVSANIYTLTELQLATNNFGEENL LGEGSLGSVYRAEFQNGQIFVVKNINMVSLSFQEEEQFLDVIWTASRLRHPNIVTLIGYCVEHGQHLLVYDYIRDLSLHDVLHSDGYKPLSWNIRLNIAL GVARALEFLHSTFSPPISHGNVKAANVLLDKELMPRLCDTGLAILRPLTSNSVKIKASEIAIGDTGYIAPEHGEPVTDNTKSDIYAFGVLLLELLTGRRP FDGSRPRAEQSLVKWASSRLHDNESLIQMVDPGIKRTLPSKTLSRFADVVLLCIQPDKFFRPPMSEIVSSLTSVLRKFTAAKSGAMEGAEVDPFERSFCS TYSRFITSPTPSYISV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G06820		SRF2	STRUBBELIG-receptor family 2 (...		Potri.006G190700 [exp]	0	1
AT3G09590			CAP (Cysteine-rich secretory p...		Potri.006G215600 [exp]	2.00	0.5658
					Potri.015G055951 [exp]	18.16	0.4554
AT2G33480	NAC	ANAC041	NAC domain containing protein ...		Potri.017G031000 [exp]	34.94	0.4226	NAC131
AT4G35270		NLP2	Plant regulator RWP-RK family ...		Potri.005G251700 [exp]	45.89	0.4328
AT5G39280		ATEXP23, ATHEXP...	EXPANSIN 23, expansin A23 (.1)		Potri.017G092700 [exp]	54.99	0.4303	ATEXPA21.1,PtEXPA27
AT5G47530			Auxin-responsive family protei...		Potri.019G096400 [exp]	78.77	0.4294
					Potri.002G093000 [exp]	88.15	0.3763
AT2G44810		DAD1	DEFECTIVE ANTHER DEHISCENCE 1,...		Potri.004G128800 [exp]	101.92	0.3557
AT1G21280			unknown protein		Potri.006G249450 [exp]	102.61	0.4159
AT3G28470	MYB	TDF1, ATMYB35	DEFECTIVE IN MERISTEM DEVELOPM...		Potri.012G072500 [exp]	111.14	0.3604	Pt-MYB.54,MYB198

Compare expression of checked genes

Potri.006G190700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.