Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G42250 508 / 4e-177 CYP712A1 "cytochrome P450, family 712, subfamily A, polypeptide 1", cytochrome P450, family 712, subfamily A, polypeptide 1 (.1) AT5G06905 421 / 1e-142 CYP712A2 "cytochrome P450, family 712, subfamily A, polypeptide 2", cytochrome P450, family 712, subfamily A, polypeptide 2 (.1) AT5G06900 374 / 9e-125 CYP93D1 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1) AT1G50520 375 / 2e-124 CYP705A27 "cytochrome P450, family 705, subfamily A, polypeptide 27", cytochrome P450, family 705, subfamily A, polypeptide 27 (.1) AT4G15360 366 / 4e-121 CYP705A3 "cytochrome P450, family 705, subfamily A, polypeptide 3", cytochrome P450, family 705, subfamily A, polypeptide 3 (.1) AT1G50560 362 / 1e-119 CYP705A25 "cytochrome P450, family 705, subfamily A, polypeptide 25", cytochrome P450, family 705, subfamily A, polypeptide 25 (.1) AT5G47990 361 / 1e-119 THAD1, THAD, CYP705A5 THALIAN-DIOL DESATURASE, "cytochrome P450, family 705, subfamily A, polypeptide 5", cytochrome P450, family 705, subfamily A, polypeptide 5 (.1) AT3G20130 360 / 6e-119 GPS1, CYP705A22 gravity persistence signal 1, "cytochrome P450, family 705, subfamily A, polypeptide 22", cytochrome P450, family 705, subfamily A, polypeptide 22 (.1.2) AT3G20940 359 / 1e-118 CYP705A31P, CYP705A30 "cytochrome P450, family 705, subfamily A, polypeptide 30", cytochrome P450, family 705, subfamily A, polypeptide 30 (.1) AT3G20950 359 / 1e-118 CYP705A32 "cytochrome P450, family 705, subfamily A, polypeptide 32", cytochrome P450, family 705, subfamily A, polypeptide 32 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G052600 [exp] 704 / 0 AT2G42250 512 / 2e-178 "cytochrome P450, family 712, subfamily A, polypeptide 1", cytochrome P450, family 712, subfamily A, polypeptide 1 (.1) Potri.006G057900 [exp] 550 / 0 AT2G42250 725 / 0.0 "cytochrome P450, family 712, subfamily A, polypeptide 1", cytochrome P450, family 712, subfamily A, polypeptide 1 (.1) Potri.016G049800 [exp] 467 / 7e-161 AT5G06900 536 / 0.0 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1) Potri.016G050200 [exp] 443 / 2e-151 AT5G06905 492 / 1e-170 "cytochrome P450, family 712, subfamily A, polypeptide 2", cytochrome P450, family 712, subfamily A, polypeptide 2 (.1) Potri.006G058100 [exp] 428 / 2e-145 AT5G06905 509 / 3e-177 "cytochrome P450, family 712, subfamily A, polypeptide 2", cytochrome P450, family 712, subfamily A, polypeptide 2 (.1) Potri.006G058200 [exp] 411 / 6e-139 AT5G06900 584 / 0.0 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1) Potri.009G065000 [exp] 390 / 8e-131 AT5G47990 425 / 1e-144 THALIAN-DIOL DESATURASE, "cytochrome P450, family 705, subfamily A, polypeptide 5", cytochrome P450, family 705, subfamily A, polypeptide 5 (.1) Potri.001G270900 [exp] 384 / 4e-128 AT5G47990 419 / 2e-142 THALIAN-DIOL DESATURASE, "cytochrome P450, family 705, subfamily A, polypeptide 5", cytochrome P450, family 705, subfamily A, polypeptide 5 (.1) Potri.009G066300 [exp] 380 / 1e-126 AT3G20140 419 / 2e-142 "cytochrome P450, family 705, subfamily A, polypeptide 23", cytochrome P450, family 705, subfamily A, polypeptide 23 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023827 [exp] 501 / 7e-174 AT2G42250 652 / 0.0 "cytochrome P450, family 712, subfamily A, polypeptide 1", cytochrome P450, family 712, subfamily A, polypeptide 1 (.1) Lus10035502 [exp] 433 / 2e-147 AT5G06900 533 / 0.0 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1) Lus10005878 [exp] 350 / 5e-115 AT5G06900 440 / 1e-150 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1) Lus10040868 [exp] 337 / 4e-110 AT5G06900 434 / 5e-148 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1) Lus10008112 [exp] 323 / 1e-104 AT5G07990 407 / 2e-137 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Lus10013150 [exp] 322 / 4e-104 AT5G07990 403 / 4e-136 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Lus10027798 [exp] 296 / 1e-96 AT5G06900 349 / 1e-117 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1) Lus10019457 [exp] 299 / 2e-95 AT3G48280 467 / 2e-161 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Lus10043308 [exp] 295 / 1e-93 AT3G48280 463 / 5e-160 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Lus10017742 [exp] 294 / 3e-93 AT5G07990 400 / 9e-135 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [poplar] [flax] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Potri.006G190800.1 pacid=42769656 polypeptide=Potri.006G190800.1.p locus=Potri.006G190800 ID=Potri.006G190800.1.v4.1 annot-version=v4.1 ATGATGGCAACAGCTGATGTTCTGTTCTTGTTTTGTTTCCTCATTTCCAGTTGGTTCCTTTCCACTATCCTTTGTAAATCCATCAAAAACTATGTACATT TTGGAACCAAGTTGCGACCCCCACCAAGTCCACCAGCTCTGCCTATCATTGGCAACCTTCACTTAATAGGCTCGGTTTTGTCCAAGTCCTTGCACAACCT AGCTCATAAACATGGTCCAATTATTCAACTCCATTTGGGCGCATCGACATGCTATGTTGTTTCAGATGCCATGATTGCCAAAGAAATCTTGAAAACCAAT GAGCTCAATTTCATTTCTCGTCCAGAATTTGATTGCTCGGATAACAACATATACAGGGGGTCTGGTTTTGTCACTGCACCATACAACACCTATTGGCGGT TCATGAAGAAACTATGCATGACCAGGCTTCTTGCCACTTCACAGCTTAATCAGCTTGTGCATGTAAGAGAGGAAGAGATTATGAAACTTGTGGACTCGTT AATTAATATTTCAAGAGAAGGGAAGTCTTGTAATTTAAAGCAGGAGTTCATCACCATGACAAATAATGTCATTTGTCGAATGGCTATGAGCACTAGATGC GTAGAGGATGATGCTAATGAAGCTAAGGAGGTAAAGGAATTGGTTAATCAAATTGTGGTGCTTGGAGGCAAGTTGAGTGCAGGTAATATTTTGGGTCCTT TGGCAAAACTAGACTTGTTCGGACATGGAAGAATGCTTCGAAATGCACTGGAGAAATTCGATCGTTTAGTAGAAAAGATCATCAAGGAGCATGAAGATCA GAGGGAGATGAAAGACATGGAAGGATCAGGATGGAGGGATTTGATGGATATTCTATTAGCAATATCTGGAGACTCGAATGCTGAAATGAACTTGACTAGA AAGGATATCAAGGCTTTCTTCCTAGACATCATCATGGCTGGCACTGATACATCAGCACTCACCATTCAATGGATCATGGCTGAGCTAATCAACCATCAGA AGATTTTCAACAGACTGAGGGAAGAAATTGATTTAGCGGTTGGGACGAAAAGGCTAGTCAAAGAATCAGATATCTTAAATCTTCCATACTTACAAGCTGT TGTGAAGGAAACGCTCAGACTACACCCTCCATCTCCCATAATCCTAAGACAATGTGCTGAAGATTGCAAGATTAATGGCTTTGATTTAAAGGGTAAGACT AGGATGCTAATCAACCTTTACAGTATCCAACGAGATCCGAATTCATGGACAGATCCTGAAGAATTCAACCCAGATAGATTCATGGTTGACTCTAACATAA ATCATTTACAGAATCAAATGGAAGTGAAAGGGCAAATGTTCAATTATCTCCCATTTGGGAGTGGGAGGCGAGGATGCCCTGCCTCATCACTTGCTTTAGT GGTTGTTCAAGCTGCTATTGGAGCCTTGGTCCAATGCTTTGACTGGGAAGTCATAGGTGAAGGGAAGATTAATCTGCAAGAGGATTCAGGATTTAGCATG GGGATGGCAAGCCCACTTGTGTGCTACCCCATCACCCGTTTTAATCCATTAAGTTTTAATAAGAGATGA
AA sequence Show only first row Show all	>Potri.006G190800.1 pacid=42769656 polypeptide=Potri.006G190800.1.p locus=Potri.006G190800 ID=Potri.006G190800.1.v4.1 annot-version=v4.1 MMATADVLFLFCFLISSWFLSTILCKSIKNYVHFGTKLRPPPSPPALPIIGNLHLIGSVLSKSLHNLAHKHGPIIQLHLGASTCYVVSDAMIAKEILKTN ELNFISRPEFDCSDNNIYRGSGFVTAPYNTYWRFMKKLCMTRLLATSQLNQLVHVREEEIMKLVDSLINISREGKSCNLKQEFITMTNNVICRMAMSTRC VEDDANEAKEVKELVNQIVVLGGKLSAGNILGPLAKLDLFGHGRMLRNALEKFDRLVEKIIKEHEDQREMKDMEGSGWRDLMDILLAISGDSNAEMNLTR KDIKAFFLDIIMAGTDTSALTIQWIMAELINHQKIFNRLREEIDLAVGTKRLVKESDILNLPYLQAVVKETLRLHPPSPIILRQCAEDCKINGFDLKGKT RMLINLYSIQRDPNSWTDPEEFNPDRFMVDSNINHLQNQMEVKGQMFNYLPFGSGRRGCPASSLALVVVQAAIGALVQCFDWEVIGEGKINLQEDSGFSM GMASPLVCYPITRFNPLSFNKR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G42250		CYP712A1	"cytochrome P450, family 712, ...		Potri.006G190800 [exp]	0	1
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Potri.005G216000 [exp]	4.00	0.9962	3
AT5G59090		ATSBT4.12	subtilase 4.12 (.1.2.3)		Potri.012G133200 [exp]	5.83	0.9961
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Potri.018G033500 [exp]	9.00	0.9961	PtrAMT4-2
AT1G20510		OPCL1	OPC-8:0 CoA ligase1 (.1.2)		Potri.008G031500 [exp]	10.53	0.9912
AT2G26730			Leucine-rich repeat protein ki...		Potri.015G073500 [exp]	10.72	0.9754
AT4G12420		SKU5	Cupredoxin superfamily protein...		Potri.008G032200 [exp]	10.95	0.9957
AT3G17675			Cupredoxin superfamily protein...		Potri.013G061300 [exp]	11.22	0.9957
AT1G59740			Major facilitator superfamily ...		Potri.004G064100 [exp]	12.84	0.9957
AT1G66350	GRAS	RGL1	RGA-like 1 (.1)		Potri.001G326000 [exp]	13.26	0.9956
AT3G08680			Leucine-rich repeat protein ki...		Potri.011G088000 [exp]	14.38	0.9956

Compare expression of checked genes

Potri.006G190800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.