Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G15010 180 / 3e-53 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT3G56860 178 / 9e-52 UBA2A UBP1-associated protein 2A (.1.2.3.4.5) AT2G41060 174 / 2e-50 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT2G22090 112 / 3e-28 UBA1A RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT2G19380 100 / 4e-23 RNA recognition motif (RRM)-containing protein (.1) AT1G17640 98 / 8e-23 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT4G24770 96 / 3e-22 CP31, ATRBP33, ATRBP31, RBP31 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1) AT5G47620 94 / 3e-21 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) AT1G76460 92 / 3e-21 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G22330 90 / 2e-20 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G048100 [exp] 499 / 7e-179 AT3G15010 181 / 1e-53 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.004G055400 [exp] 197 / 4e-60 AT3G15010 303 / 2e-100 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.011G065200 [exp] 196 / 1e-59 AT3G15010 295 / 1e-97 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.001G377400 [exp] 187 / 2e-55 AT3G15010 342 / 2e-114 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.001G220600 [exp] 177 / 1e-51 AT3G56860 232 / 1e-70 UBP1-associated protein 2A (.1.2.3.4.5) Potri.006G025600 [exp] 176 / 3e-51 AT3G56860 353 / 2e-117 UBP1-associated protein 2A (.1.2.3.4.5) Potri.005G081600 [exp] 174 / 5e-51 AT2G41060 213 / 8e-65 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.016G023800 [exp] 168 / 6e-48 AT3G56860 348 / 1e-115 UBP1-associated protein 2A (.1.2.3.4.5) Potri.016G090700 [exp] 97 / 3e-23 AT2G37220 302 / 4e-103 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023817 [exp] 420 / 2e-147 AT3G15010 188 / 5e-56 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10021035 [exp] 402 / 1e-136 AT3G15010 182 / 4e-51 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10025418 [exp] 184 / 1e-54 AT3G15010 336 / 8e-113 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10032516 [exp] 183 / 3e-54 AT3G56860 405 / 6e-139 UBP1-associated protein 2A (.1.2.3.4.5) Lus10015290 [exp] 179 / 9e-53 AT3G15010 335 / 2e-112 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10043016 [exp] 180 / 2e-52 AT3G56860 463 / 1e-160 UBP1-associated protein 2A (.1.2.3.4.5) Lus10039054 [exp] 99 / 1e-22 AT3G07810 428 / 4e-147 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10023723 [exp] 95 / 6e-22 AT1G60000 259 / 1e-85 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10043168 [exp] 97 / 7e-22 AT3G07810 456 / 2e-157 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10032579 [exp] 96 / 1e-21 AT3G07810 447 / 8e-154 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [poplar] [flax] RRM PF00076 [poplar] [flax] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Potri.006G190900.2 pacid=42767375 polypeptide=Potri.006G190900.2.p locus=Potri.006G190900 ID=Potri.006G190900.2.v4.1 annot-version=v4.1 ATGGAAGACTTGAAGAAGAGAAAGATGGACGAGGCAATCATCAATGGTTCTGCCGAAACATTAACCACACAAGATTATCTTCGCTCACTGCTTGACCCTC TTAGTAAACCCCAGCTTGTCGATCTTCTTTCTAGACTAGGGTCTCAATATCCTTCAATTGCAGAAGAAATTAAAAGTCTTGCCAGTGCGGATCCAGTCCA TCGAAAGCTTTTTGTTCGTGGCTTGGCCTGGAATACCACTTCAGAAACCTTGTGTGCTGAATTTCGAATGCATGGTGAGATAGAAGAAGGGTCAGTGATC TATGACAAAGCGACAGGAAAGTCACGTGGCTATGGTTTCATTACGTACAAGCATATGGAATCGGCACAAAGTGCACTAGGTGCACCTAGCAAATTGATTG ATGGCCGAATGGCTGTCTGCAATTTAGCTTGTGAGGGATTAACTGGTGCAACTACCACACCGGATCTAACCCAGAGGAAACTCTACATTGGGGGTTTGTC GCCAGAGATCTCAAGTGAGATGCTGCTTCATTTTTTTGGAAGATATGGTGAGATTGAAGAAGGCTCAGTTGCCTATAACAAAGATACTAATGAATCACGT GGGTTTGGTTTTGTTACATACAAGACAGTGGAGGCTGCAAAGAAGGCCATAGATGATCCACACAAGTTGCTTGGGGGGAGAACTATCACTGTGAAGCTTG CTGATACCCACAAGGGCAAGACGGTACAAATGCAGTCACCAGCGCCCATGGTTCCAGTACCTGTACCAATAGCAGCAGCTGGTTATGCGCAGCCAGGTAA AGCACCAGTTGGCAGTGGTACTCCTGTTGGTTATCCTTATCATCAAACTGTAGCATCATATCCAGCTTCTTCCTACCCTAATCCTCCAGTTGCACCTGCT CCATATCCAACACAATCTCAAGTTTCATATGCACCAGTTTCTGCAAAGAAAGAACTGTTAGGACTTTCATCAACACCACCTGTCGGAATGGGTGGATACC CTTATTACTACCCTAAACAGTAA
AA sequence Show only first row Show all	>Potri.006G190900.2 pacid=42767375 polypeptide=Potri.006G190900.2.p locus=Potri.006G190900 ID=Potri.006G190900.2.v4.1 annot-version=v4.1 MEDLKKRKMDEAIINGSAETLTTQDYLRSLLDPLSKPQLVDLLSRLGSQYPSIAEEIKSLASADPVHRKLFVRGLAWNTTSETLCAEFRMHGEIEEGSVI YDKATGKSRGYGFITYKHMESAQSALGAPSKLIDGRMAVCNLACEGLTGATTTPDLTQRKLYIGGLSPEISSEMLLHFFGRYGEIEEGSVAYNKDTNESR GFGFVTYKTVEAAKKAIDDPHKLLGGRTITVKLADTHKGKTVQMQSPAPMVPVPVPIAAAGYAQPGKAPVGSGTPVGYPYHQTVASYPASSYPNPPVAPA PYPTQSQVSYAPVSAKKELLGLSSTPPVGMGGYPYYYPKQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G15010			RNA-binding (RRM/RBD/RNP motif...		Potri.006G190900 [exp]	0	1
AT5G64670			Ribosomal protein L18e/L15 sup...		Potri.016G002400 [exp]	5.19	0.7759
AT3G49470		NACA2	nascent polypeptide-associated...		Potri.012G006700 [exp]	12.48	0.7242
AT3G10950			Zinc-binding ribosomal protein...		Potri.003G085100 [exp]	13.11	0.7329
AT2G26990		COP12, ATCSN2, ...	FUSCA 12, CONSTITUTIVE PHOTOMO...		Potri.001G222700 [exp]	14.28	0.6984	FUS12.2
AT4G01310			Ribosomal L5P family protein (...		Potri.014G089100 [exp]	23.04	0.7069	RPL5.2
AT1G10865			unknown protein		Potri.010G248800 [exp]	27.74	0.6965
AT3G15010			RNA-binding (RRM/RBD/RNP motif...		Potri.016G048100 [exp]	29.66	0.6942
AT5G66860			Ribosomal protein L25/Gln-tRNA...		Potri.007G039700 [exp]	34.05	0.7066
AT5G67500		VDAC2, ATVDAC2	ARABIDOPSIS THALIANA VOLTAGE D...		Potri.014G016300 [exp]	35.00	0.7110
AT5G54580			RNA-binding (RRM/RBD/RNP motif...		Potri.011G130300 [exp]	36.33	0.7089

Compare expression of checked genes

Potri.006G190900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.