Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06790 141 / 3e-42 unknown protein AT3G57950 127 / 3e-37 unknown protein AT2G42180 109 / 2e-30 unknown protein AT5G47920 40 / 0.0004 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G047800 [exp] 313 / 2e-110 AT5G06790 137 / 1e-40 unknown protein Potri.003G160300 [exp] 42 / 6e-05 AT5G47920 172 / 1e-54 unknown protein Potri.001G008080 [exp] 39 / 0.0003 AT2G26110 44 / 2e-06 Protein of unknown function (DUF761) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021036 [exp] 142 / 6e-43 AT3G57950 108 / 7e-30 unknown protein Lus10023815 [exp] 91 / 5e-23 AT5G06790 66 / 8e-14 unknown protein Lus10002566 [exp] 44 / 2e-05 AT5G47920 79 / 3e-18 unknown protein Lus10000281 [exp] 44 / 2e-05 AT5G47920 76 / 5e-17 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05553 [poplar] [flax] DUF761 Cotton fibre expressed protein
Representative CDS sequence Show only first row Show all	>Potri.006G191100.1 pacid=42769474 polypeptide=Potri.006G191100.1.p locus=Potri.006G191100 ID=Potri.006G191100.1.v4.1 annot-version=v4.1 ATGGTGAGCACCCCGTCCTTCCTAAAAACCTTGCACCCTCTTCAAGTTTTCTCTACAAAGTCACCATCTTCTACCTTAAGCTCCATGAAGATCAAAACCC TAATTCACACCCTTATCATCTCACACGTGTGCCGCATCATTCGAGCTCTATCCAAAGCAAAATCCATTCTCGTTGAGATTCTTAAAGAAAACCAACCTTT ACACTTCATTTTCCCTACAAAGAACTCAAAAAGGAAGAACAGGAGTAGGAAGATATTCCTTGGTTCATTTAGGTTGCACTATAACTGGTGCTCTTCACAT GTATTGCCAGTGTCAGAACCAGTTCTTGATGGATTCTCTGCTTCCCATTTCTATTATGACTCTACGTGGAACTCAATAATCACAAATGAGCAGTATGAGG ACAACACCGAGTCTCAGCTTTCAGGGTACCTTCACTGGCTAGAAGAGAAAGTTGATGGGGAGGAGTCTAGTGGCACTGAGAAGGATATCAATCGGCTAGC GGATTTGTTCATTGCAAGCTGCCATGAAAAGTTTATATTGGAGAAGCAGGAGTCCTACAGGAGATTCCAGGAAATGATGGCTAGAAGCATGTGA
AA sequence Show only first row Show all	>Potri.006G191100.1 pacid=42769474 polypeptide=Potri.006G191100.1.p locus=Potri.006G191100 ID=Potri.006G191100.1.v4.1 annot-version=v4.1 MVSTPSFLKTLHPLQVFSTKSPSSTLSSMKIKTLIHTLIISHVCRIIRALSKAKSILVEILKENQPLHFIFPTKNSKRKNRSRKIFLGSFRLHYNWCSSH VLPVSEPVLDGFSASHFYYDSTWNSIITNEQYEDNTESQLSGYLHWLEEKVDGEESSGTEKDINRLADLFIASCHEKFILEKQESYRRFQEMMARSM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G06790			unknown protein		Potri.006G191100 [exp]	0	1
AT3G25490			Protein kinase family protein ...		Potri.013G031501 [exp]	1.41	0.9846
AT4G37260	MYB	ATMYB73	myb domain protein 73 (.1)		Potri.001G300200 [exp]	9.74	0.8971
ATCG01310		ATCG01310.1, RP...	ribosomal protein L2 (.1)		Potri.005G154300 [exp]	11.83	0.9808
ATCG01310		ATCG01310.1, RP...	ribosomal protein L2 (.1)		Potri.013G136466 [exp]	16.15	0.9794
					Potri.008G210639 [exp]	16.24	0.9554
ATCG00750		ATCG00750.1, RP...	ribosomal protein S11 (.1)		Potri.010G032501 [exp]	17.32	0.9793
ATCG00820		ATCG00820.1, RP...	ribosomal protein S19 (.1)		Potri.005G154674 [exp]	18.00	0.9784
ATCG01310		ATCG01310.1, RP...	ribosomal protein L2 (.1)		Potri.011G074401 [exp]	18.46	0.9791
AT5G53890		AtPSKR2	phytosylfokine-alpha receptor ...		Potri.011G116900 [exp]	18.86	0.8415
ATCG01300		ATCG01300.1, RP...	ribosomal protein L23 (.1)		Potri.013G138612 [exp]	21.35	0.9739

Compare expression of checked genes

Potri.006G191100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.