Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13020 332 / 6e-112 AtEML3, ACK1 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) AT5G06780 305 / 1e-102 AtEML2, ACK4 EMSY-like 2, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1), Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.2) AT3G12140 302 / 2e-101 AtEML1, ACK3 EMSY-like 1, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1), Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.2), Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.3) AT2G44440 245 / 1e-77 AtEML4 EMSY-like 4, Emsy N Terminus (ENT) domain-containing protein (.1) AT3G57970 48 / 7e-06 Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) AT3G57960 44 / 4e-05 Emsy N Terminus (ENT) domain-containing protein (.1) AT5G20030 44 / 0.0001 Plant Tudor-like RNA-binding protein (.1) AT5G47690 42 / 0.0006 binding (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G047600 [exp] 639 / 0 AT5G13020 353 / 3e-120 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) Potri.001G013800 [exp] 377 / 6e-129 AT5G13020 439 / 2e-152 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) Potri.001G229000 [exp] 360 / 2e-122 AT5G13020 413 / 1e-142 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) Potri.T070080 [exp] 360 / 4e-122 AT5G13020 456 / 3e-159 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) Potri.009G022900 [exp] 353 / 1e-119 AT5G13020 431 / 4e-150 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) Potri.003G212300 [exp] 340 / 2e-114 AT5G13020 455 / 5e-159 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) Potri.006G250600 [exp] 52 / 3e-07 AT4G32440 272 / 4e-88 Plant Tudor-like RNA-binding protein (.1.2.3) Potri.018G030500 [exp] 52 / 4e-07 AT4G32440 273 / 2e-88 Plant Tudor-like RNA-binding protein (.1.2.3) Potri.005G216200 [exp] 52 / 4e-07 AT5G20030 96 / 4e-22 Plant Tudor-like RNA-binding protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004188 [exp] 329 / 6e-111 AT5G13020 321 / 2e-107 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) Lus10021038 [exp] 322 / 3e-109 AT5G06780 290 / 3e-97 EMSY-like 2, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1), Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.2) Lus10031223 [exp] 310 / 1e-102 AT5G13020 459 / 9e-161 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) Lus10031799 [exp] 278 / 1e-90 AT5G13020 417 / 1e-144 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) Lus10031221 [exp] 267 / 2e-86 AT5G13020 440 / 7e-154 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) Lus10031798 [exp] 266 / 3e-86 AT5G13020 434 / 1e-151 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) Lus10000040 [exp] 152 / 3e-45 AT5G13020 149 / 6e-45 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) Lus10014715 [exp] 50 / 2e-06 AT4G32440 122 / 1e-31 Plant Tudor-like RNA-binding protein (.1.2.3) Lus10018749 [exp] 49 / 2e-06 AT4G32440 130 / 3e-35 Plant Tudor-like RNA-binding protein (.1.2.3) Lus10018332 [exp] 50 / 3e-06 AT4G31880 464 / 2e-149 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03735 [poplar] [flax] ENT ENT domain
Representative CDS sequence Show only first row Show all	>Potri.006G191400.3 pacid=42770133 polypeptide=Potri.006G191400.3.p locus=Potri.006G191400 ID=Potri.006G191400.3.v4.1 annot-version=v4.1 ATGGAATATGAAGTTTCAGACAGTAGTGGTACTGATGATGATCTCCCGCCCTCAAATCAAAATAGACTTGTAAGACGAGGAAGAGCTCCAGGAAGTGGGC AATCTGCTGTAATTTCTGCAACATATTCTAGAGTGCAAGCTGACATGGAGGCCCAAATTCATCACCTCGAACAAGAAGCATATAGGGCTGTACTTCGTGC TTTTAAGGCTCAGTCTGATCAACTTTCTTGGGATAAGGAGGGTTTGATTACAGAACTTAGGAAAGAGCTCAGGGTGTCAGATGATGAACACAGAGAGATC TTAACATTGGTCAATAGAGACGATATCATTCAAAGGATAAGGGAGTGGAGAGAGGCAGGTGGCCAGCAAGTTCCCAGGTTGATTGCTTCACAGTCTGTTC ATGATGTTTTGTCCAGTCCCACTGTTTCTGCATCCCGTAAAAAACAGAAGACTTCCCTGGTGTACCCCACTGGTCCTCCCAGAAATCAACATTTCAACAA CCATGGTTCCGCCTATGATGATAAGGAAATTGGAAAAGAAGTGTGGACAAGATGGCCTGAGGACAACAACTTCTACAAGGCTGTTATAACTAGATATAAC CCTGCTGAGGCTCGACATGCTCTGGTCTATGATATGAATACTGAAAATGAGACATGGGAATGGGTTGATCTCAATGAGATGGCTCCAGAGGACCTTCGTT GGGAAGTTGAAGATCCTGGAATTTCTCATGGCAGGCCAGGCCATGTAATGAAAAAATCTATGAGCCATGGTGGTCTTATTTCAAGTTCTGTAAGAGGGAG GGGATCCACTAAGGATCAATCAAAAAGGGAATTTTTTCGAACACAGAATGGTATTGCAAGGAAACTTTCTGACAATATTGAATTACTCAACACAGAGTCC CTAGTTAAGGAGGTGGAGAGGGTTTTTGGTGTCAGCTATCCTGATCCTCTTGAGCTTGAGAAGGCAAAAAAAATGTTAAAAGAGCATGAACAAGCACTTG TTGATGCAATTGCAAGGCTCGCAGATGCATCTGACGGGGAAAGTGATGGAGATCCACGATTCTTGCATGGGCAAGCAATGGAGGAGCAGGAATGA
AA sequence Show only first row Show all	>Potri.006G191400.3 pacid=42770133 polypeptide=Potri.006G191400.3.p locus=Potri.006G191400 ID=Potri.006G191400.3.v4.1 annot-version=v4.1 MEYEVSDSSGTDDDLPPSNQNRLVRRGRAPGSGQSAVISATYSRVQADMEAQIHHLEQEAYRAVLRAFKAQSDQLSWDKEGLITELRKELRVSDDEHREI LTLVNRDDIIQRIREWREAGGQQVPRLIASQSVHDVLSSPTVSASRKKQKTSLVYPTGPPRNQHFNNHGSAYDDKEIGKEVWTRWPEDNNFYKAVITRYN PAEARHALVYDMNTENETWEWVDLNEMAPEDLRWEVEDPGISHGRPGHVMKKSMSHGGLISSSVRGRGSTKDQSKREFFRTQNGIARKLSDNIELLNTES LVKEVERVFGVSYPDPLELEKAKKMLKEHEQALVDAIARLADASDGESDGDPRFLHGQAMEEQE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G13020		AtEML3, ACK1	EMSY-like 3, Emsy N Terminus (...		Potri.006G191400 [exp]	0	1
AT1G79350		EMB1135	embryo defective 1135, RING/FY...		Potri.010G174900 [exp]	6.40	0.7208
AT1G80150			Tetratricopeptide repeat (TPR)...		Potri.003G062700 [exp]	23.62	0.6219
AT2G36010	E2F_DP	ATE2FA, E2F3	E2F transcription factor 3 (.1...		Potri.006G205100 [exp]	25.13	0.6001	Pt-E2F3.1,E2Fa_1
AT2G17975			zinc finger (Ran-binding) fami...		Potri.005G115100 [exp]	37.38	0.6070
AT5G09850			Transcription elongation facto...		Potri.001G307600 [exp]	41.56	0.5970
AT5G15270			RNA-binding KH domain-containi...		Potri.017G085500 [exp]	58.78	0.5533
AT5G15640			Mitochondrial substrate carrie...		Potri.004G117000 [exp]	61.77	0.5721
AT1G48410		AGO1	ARGONAUTE 1, Stabilizer of iro...		Potri.012G037100 [exp]	61.91	0.5815
AT2G40700			P-loop containing nucleoside t...		Potri.019G059100 [exp]	66.96	0.5797
AT1G24330			ARM repeat superfamily protein...		Potri.010G058000 [exp]	86.29	0.5081

Compare expression of checked genes

Potri.006G191400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.