Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G20970 309 / 6e-86 unknown protein AT4G27500 97 / 5e-20 PPI1 proton pump interactor 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G047500 [exp] 472 / 8e-146 AT1G20970 71 / 3e-12 unknown protein Potri.011G119700 [exp] 106 / 5e-23 AT4G27500 431 / 6e-144 proton pump interactor 1 (.1) Potri.001G399400 [exp] 105 / 9e-23 AT4G27500 463 / 2e-156 proton pump interactor 1 (.1) Potri.002G000300 [exp] 50 / 7e-06 AT1G21080 602 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1.2.3) Potri.005G260400 [exp] 49 / 3e-05 AT1G21080 585 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041932 [exp] 101 / 2e-21 AT4G27500 410 / 4e-136 proton pump interactor 1 (.1) Lus10005546 [exp] 100 / 3e-21 AT4G27500 415 / 2e-137 proton pump interactor 1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.006G191500.7 pacid=42769545 polypeptide=Potri.006G191500.7.p locus=Potri.006G191500 ID=Potri.006G191500.7.v4.1 annot-version=v4.1 ATGTCGGCGGATTTGAATGTGAATCAAATAGAGGAGAAGATATCTGTTTTGGATCAGCCTGAAGAATCCGCTCGCGTTGATTGTAATGGGAATGGCAAGG TTAATGATCATCATGGCCCTGATCCTGTCTGTGCCGAAGACTCTGTAGCTGATCAGGTTGGAGAATTGAAGGCTGATCGTGTCGAATCCGAGTCCATTAC TGGGTTCCGTGACGACGACGATCCGATCGAGAAAGAAGAAGATCTTCAGGCTGTTGAGAAGGGGAGGGAGGAAAAGTTGGCGGAGATACCAGAAGATCAT GATGTAGAAGGGAACAAAAAGGAGTTAATTAATCATGCTGAACTCTCAAATGCAGTGGCAGAAGCTCAGGAATCGCAAGACACAAGTGTGCATGTTGCTG AATCTGAGCTAAATCGGTCAAATAATGATGAGGTGATGGTTGAAGAGGAAAGCAAATTGAATTCGACCATTGACATAAAAGAACATGAAGATTCTCAGGC TGTAGCTATCAATGGTGTTCATAATGATTTGGATTTGGATCAGCAGAGGGACCTGGCAGAAGCTCAGGAATCGCAAGACAATAGTGTGCATGTTGCTGAA TCTGAGCTAAATCGGTCAAATAATGATGAGGAGAGGGTTGAGGAGGAAAGCAAATTGAATTCGACCATTGACATAAAAGAACATGAAGATTCTCAGGCTG TAGCTATCAATGGTGTTCATAATGATTTGGATTTGGATCAGCAGAGGGACCTGGCAGAAGCTCAGGAATCGCAAGACACAAGTGTGCATGTTGCTGAATC TGAGCTAAATCGGTCAAATAATGATGAGGAGATGGTTGAGGAGGAAAGCAAATTGAATTCGACCATTGACATAGAAGAACATGAAGATTCTCAGGCTGTA GCTATCAATGGTGTTCATAATGATTTGGATTTGGATCAGCAGAGGGACCTGGCAGAAGCTCAGGAATCGCAAGACACTAGTGTGCATGTTGCTGAATCTG AGCTAAATCGGTCAAATAATGATGAGGAGATGGTTGAGGAGGAAAGCAAATTGAATTCGACCATTGACATAAAAGAACATGAAGATTCTCAGGCTGTAGC CATCAATGGTGTTCATAATGATTTGGATTTGGATCAGCAGAGGGACCTGGCAGAAGCTCAGGAATCGCAAGACACAAGTGTGCATGTTGCTGAATCTGAG CTAAGTCGGTCAAATAATGATGAGGAGAAGGTTGAGGAGGAAAGCAAATTGAATTCGACCATTGACATAAAAGAACATGAAGATTCTCAGGCTGTAGCTA TCAATGGTGTTCATAATGATTTGGATTTGGATCAGCAGAGGGACCTGGCAGAATTGATCACCACTGAAGATGTTTCTGAATCTGAGCCCAGTCAGTCTAG GAATGATGACGAGAAGGTTGAGGAAAGCAAATTGGGTTCTGAAGATTCTCAGGCTGTAGTTAGCAATGCTGCTCATAATTTTCTAGCCTCAGATCAAGAG AAGAAACTGAAGGAATTGATGAATAATGATGATGTTACTGAATTCAAGCCAAAACAATCTAGCATTGATGTGAAGGTAGAGGAGGAAAGCAAATTGGACT CGGCCATCCATGTAGAAGAAATTGAAGATTCTCAGGCTGCAGTTATCAATGGTGCCTGTAATAGTTTGGATTTGAACCAGGAGAAGGAACAGCCAGAATT GATCAAGGATCTTCCTCTGGAAGATTCTGTGGAGGAGTCTGGGGATCCCCTCAAGCAGAATCTGGAAACAGCTCCATGTCCAGTCATGGCTGATGAAAAA TTGGAAGCAGAATCTGCTGAAGGCCCTACATCTGATGAAAATAGAGATGGCTTGCCTGCTGGTCATGCTCAAGATACTGCTGCAGAAACTCCGGTTGTTG ATGACCTGGTTGATGCCAAACAAAATATATCTAAGAGCTCTTCTGAAAATGTTGAACTTGTAGCAACTTCTGATGCTGAAACTGGTCAGAGTTTTCCAAT TTCTAGTGATAATGGTACAACAGGAGATGAAACAAGTCACATCCTTATGGATGCTGTGCAATCAGAAGTGCCACATGCTAATGGCCTTGATATTCATGAA AAAGGAGGATTGCTTACTAGCCAGGAAAGTGCTTCACAAACTGTTCTTGTTAATGACTTTGTTCATACACCAGAGCAAAACCATACCTTAGAAATCAGCA CGGAAGTGTCCTCCCCTGCTGTTCTCGAGGAAGCACCTGTTGAAAGTAGTGAAAGTTTCCCAGTTTCTCCTATCAATGATATTGGAGCAGAACCAATTGT CAGAATTGAGGATTCTTGTCCAGTAGAAGATTCCAAGTTATGTGATATTGTAAGAACAGAGACCAAGGTTGATAACATAGGTGAAAGTGCTGATTCTCAT CCTGTTGATGATTCAAAAGTAGAGGCTGAAGTTGAGAATGTCCTTGTTGCACCAAGTGGCCATGCTAATGATGTGAAGCTAGATATTGGGGCTAGTTCCC ATTCCGTTGAATCTGATGAGAAAGTATCTATTTTGTCAATCGGTAATGTGGATGTAGAATCTGAAGTCACAGAAGCAGTGAACGAAGGTGATAGCAACAG AACTTCTGTTTCCATTGACAATCCAGATGGAGAAACCTTTAAATGTGATTCAACTGGGAATGAAAGCTACATGCCCAAAATTGAAGTCCAAGCAGACTCA GAAGTTGAAAATATATCAACTGCAGCAAGGGAAGAAGTGCCCAACAGAGATGGCTTTGTGTCTCAGCTTGAGGGTGAGGTTAGTAAGAATGAAACTCCCA AACCTACTTCGGAAGACTCTGCGGTTGTTACCTCTGATGAGCAATATGTTGTTGCTGAGCTGGGGAAAGGGCCATTCTACATAATTAAGGTTCCAAGATT TGATGAAAGAAATTTAAGAGAGAAGGTTGAAGATGCTAAATTTCAAGTTGAGGAGAAGAGTAAAATCCGGGATGCTATTCAAGCTCAAATCCAAATAATA AAGGCCAAGCGTAAAGAGTATGAAGATAGCTTTTTAGATGCCAGATCAGAAGAGAAAGCTGCACGTGACTTGCTTAAGGCCAAGCGGAAGGAAATAGATT CTGTTCAATATATAATTAACAGAACGAGGAATGCCCTTGAAATTGAGGAAATTGATGGCAGGATACGCTCTATGGAACACAAGATACAACATGAAACCCT GCCTTTGAAGGAAGAAAAGCAGTTCATTCGTGATATCAAGCAGTTGAAGCAAATTCGAGAGCAGTTCTCTTCTAATATGGGCAGCCAGGATGAAGTTCAG CAGGCTATGGATCAGAAAGATCAAAGTGAAGAGCGCTTAAAGTCTTTGAGGAAAGAAGCAGATGTATTGAGAGACAGCCTTCTCAAAGCTGAAGCAGTCA CTGAAGATGCTAAGAAGAAATATAATGATGAACATGAGAAGATAAATCAATTGCTATTTCAGCATAGAGCTGCTAATGATATACGACAAGAAGCATTTGC GCATTTGCAGAGTTTGAGGAAACAATTATATGAAAAGAGTAAATTTTTTTACAAGTACAAAGATGATTTAACAGCAGCAACTAATTTGGCATTGAAGGGA GATAAAGAGGAACTTCAACGTCATTGTGCTAACCAAGTGGAGAGAGTTATGGAATTATGGAATAACAATGACGAGTTCCGGAAAGAGTACATGAGTTCCA ACATGAGGAATACATTAAGGAGACTGCGGACATTGGATGGTCGTGCACTGGGCCCTGATGAACAGCCACCCATTATTCCAAATGTTGTTAGTCAAAGAGC GACCAAACACAATGTTGCACCATCAGCTCCTGCTCTTGAAGTAGAAAAGCCAGTTACACCTGTGGAGACCCAAAGGATAGATGAAAAATCCACAGCAAAG CTTGGGGACAAAAAGAATCAGACTGTTAAAACTAAAAGGCAGGCAAAACCTGCTTCCTTGGAGAATGGTTTGCCAACTGTTTCTGGAAGAGATCAGATTG AAGAATCAAGACAAGAGGAGAATAAGCTTCCGAAGGAGGAAGAATCAAGGCAAGAGAATAAGCTTACGAAGGAGGAAGAATCAAGGCAAGAGAATAAGCT TACAAAGGAGGAAGTTGAGTTAGCCAGGAAGATAGAGGAATTGAGGAAGGAAAAGGAAGCAGCCATGTTAAAGGAGCAACGGAGATTGGAGGAGAAGGCC AAAGCAAAAGAGGCAATGGAGAGGAAAAAACGAAATGCAGAAAAGGCCCAGGCCAGGGCTTCGCTAAGAGCACAAAGGGAAGCTGAGCAGAAAGAGAAGG AAAAGGAGAAGAAGGCAAAGAAGAAGGAAAAAAGGAAGGCAGCAGCAGAGGATACTAAAGATATCGATGAGGTTGAGTCTGCTCCTAGTTCTGAAACTCC AACTGAAACCAATGAGTCTGAAAGAACCGAGAAGCCTGTGACTGTGGCAAAGAGGCCTCAAAAGCAAACAAAGGCAAAATCTATGCCTCTGCCTCTTCGC AACAAGGGTAAGAGAAAGATGCAAACATGGATGTGGGCCCTTATCACACTGCTGGCTGTTGTTGCCTTGTTTTTTATGGGGAACAGCAGCTTCTTTAATC TTGGGCTGCAACAAAGGTTTGGCATCTAA
AA sequence Show only first row Show all	>Potri.006G191500.7 pacid=42769545 polypeptide=Potri.006G191500.7.p locus=Potri.006G191500 ID=Potri.006G191500.7.v4.1 annot-version=v4.1 MSADLNVNQIEEKISVLDQPEESARVDCNGNGKVNDHHGPDPVCAEDSVADQVGELKADRVESESITGFRDDDDPIEKEEDLQAVEKGREEKLAEIPEDH DVEGNKKELINHAELSNAVAEAQESQDTSVHVAESELNRSNNDEVMVEEESKLNSTIDIKEHEDSQAVAINGVHNDLDLDQQRDLAEAQESQDNSVHVAE SELNRSNNDEERVEEESKLNSTIDIKEHEDSQAVAINGVHNDLDLDQQRDLAEAQESQDTSVHVAESELNRSNNDEEMVEEESKLNSTIDIEEHEDSQAV AINGVHNDLDLDQQRDLAEAQESQDTSVHVAESELNRSNNDEEMVEEESKLNSTIDIKEHEDSQAVAINGVHNDLDLDQQRDLAEAQESQDTSVHVAESE LSRSNNDEEKVEEESKLNSTIDIKEHEDSQAVAINGVHNDLDLDQQRDLAELITTEDVSESEPSQSRNDDEKVEESKLGSEDSQAVVSNAAHNFLASDQE KKLKELMNNDDVTEFKPKQSSIDVKVEEESKLDSAIHVEEIEDSQAAVINGACNSLDLNQEKEQPELIKDLPLEDSVEESGDPLKQNLETAPCPVMADEK LEAESAEGPTSDENRDGLPAGHAQDTAAETPVVDDLVDAKQNISKSSSENVELVATSDAETGQSFPISSDNGTTGDETSHILMDAVQSEVPHANGLDIHE KGGLLTSQESASQTVLVNDFVHTPEQNHTLEISTEVSSPAVLEEAPVESSESFPVSPINDIGAEPIVRIEDSCPVEDSKLCDIVRTETKVDNIGESADSH PVDDSKVEAEVENVLVAPSGHANDVKLDIGASSHSVESDEKVSILSIGNVDVESEVTEAVNEGDSNRTSVSIDNPDGETFKCDSTGNESYMPKIEVQADS EVENISTAAREEVPNRDGFVSQLEGEVSKNETPKPTSEDSAVVTSDEQYVVAELGKGPFYIIKVPRFDERNLREKVEDAKFQVEEKSKIRDAIQAQIQII KAKRKEYEDSFLDARSEEKAARDLLKAKRKEIDSVQYIINRTRNALEIEEIDGRIRSMEHKIQHETLPLKEEKQFIRDIKQLKQIREQFSSNMGSQDEVQ QAMDQKDQSEERLKSLRKEADVLRDSLLKAEAVTEDAKKKYNDEHEKINQLLFQHRAANDIRQEAFAHLQSLRKQLYEKSKFFYKYKDDLTAATNLALKG DKEELQRHCANQVERVMELWNNNDEFRKEYMSSNMRNTLRRLRTLDGRALGPDEQPPIIPNVVSQRATKHNVAPSAPALEVEKPVTPVETQRIDEKSTAK LGDKKNQTVKTKRQAKPASLENGLPTVSGRDQIEESRQEENKLPKEEESRQENKLTKEEESRQENKLTKEEVELARKIEELRKEKEAAMLKEQRRLEEKA KAKEAMERKKRNAEKAQARASLRAQREAEQKEKEKEKKAKKKEKRKAAAEDTKDIDEVESAPSSETPTETNESERTEKPVTVAKRPQKQTKAKSMPLPLR NKGKRKMQTWMWALITLLAVVALFFMGNSSFFNLGLQQRFGI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G20970			unknown protein		Potri.006G191500 [exp]	0	1
AT5G52280			Myosin heavy chain-related pro...		Potri.015G143800 [exp]	2.23	0.8941
AT1G19430			S-adenosyl-L-methionine-depend...		Potri.002G260600 [exp]	4.00	0.8941
AT2G27310			F-box family protein (.1)		Potri.004G199300 [exp]	5.29	0.8596
					Potri.016G091300 [exp]	5.47	0.8889
AT5G20600			unknown protein		Potri.012G036500 [exp]	5.91	0.8795
AT1G04850			ubiquitin-associated (UBA)/TS-...		Potri.001G316400 [exp]	12.96	0.8447
AT1G06530		PMD2	peroxisomal and mitochondrial ...		Potri.002G060200 [exp]	14.38	0.8570
AT5G18230			transcription regulator NOT2/N...		Potri.013G059800 [exp]	18.02	0.8212
AT4G27120			unknown protein		Potri.001G418900 [exp]	18.49	0.8330
AT5G56360		PSL4	PRIORITY IN SWEET LIFE 4, calm...		Potri.003G223000 [exp]	19.74	0.8414

Compare expression of checked genes

Potri.006G191500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.