Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G57990 299 / 2e-99 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G046900 [exp] 421 / 4e-148 AT3G57990 345 / 3e-118 unknown protein Potri.003G088500 [exp] 76 / 4e-15 AT3G57990 58 / 5e-09 unknown protein Potri.001G145400 [exp] 66 / 1e-11 AT3G57990 80 / 3e-16 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021042 [exp] 287 / 7e-95 AT3G57990 341 / 6e-116 unknown protein Lus10004184 [exp] 276 / 2e-90 AT3G57990 329 / 3e-111 unknown protein Lus10012013 [exp] 254 / 8e-82 AT3G57990 296 / 3e-98 unknown protein Lus10016270 [exp] 251 / 1e-80 AT3G57990 300 / 4e-100 unknown protein Lus10012012 [exp] 149 / 2e-44 ND 164 / 2e-50 Lus10016269 [exp] 148 / 6e-44 ND 169 / 1e-52 Lus10000401 [exp] 102 / 2e-26 AT3G57990 107 / 4e-29 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.006G191800.1 pacid=42766880 polypeptide=Potri.006G191800.1.p locus=Potri.006G191800 ID=Potri.006G191800.1.v4.1 annot-version=v4.1 ATGAAAGCCTCCCTAAAATTTCGTGAAGAGCAAAACCCTCTTTTTAGAGCCAAAGTGCCACTAAGCATCATAGGTTTACCATTCCAATCAGGGATTATAG CCGGTGAATCCAAAGAACTTTCTTTAAATCTCTCTACTTTTTTTGAATCAGGCCCCTCCTTCAAATTCTCTTACCGTCCTAATGACACCTGGAACCCCTT CTCTCTCGTTATCAAAACCGGAACCGGCCCTTTCGGTTCTCCGGTCTCAAGCTCCATGATTATGAGTGCTGAATTCAATTTGTTGGGTAAAGGTAGTAAT AATAATAATTTGAACCCTAGCTTCATGCTTCACTTCAAGCCTCAATTTGGGGACTTTTCTATTAAGAAGTCGCAGTCGTCCAGTCATGTCAGTCACGTTA CGAGGTCGATTCAGAACGGTGGCGTTTCGTCTGATGATGATGGATCGGTTGAGGTCGTCGAGCCTGCGTCTCCGAATACGACTCCGGCTGTGGCTAATGG CATGTTTTATGGGAAGAGGATTGCTGTTTTGCCTCCTGTGACGGCGAGTGCGGTTGCGGGGGTTTTTTCTGGTCTCGAAGTGGCAGCAAGGACGAAGTTG CCCGTGAGGAGCAGGGCTGTGGTGAATTTCCGGTGGGGAGTTCGGGTCCCGGCTGAGATCAAGAGTGGTAGTGGTGAATCAACGGCTGGGATTAATTTCA GGAAGATACCGTTTCTGGTGATGAACAAGGTTGGGATTGAACACGTGGATGACGGAGATGGGAGGAGTAAGAAAGAGGGGACCACTGGGAAGGTGGGGAT GGAGTTTGGGAATTCTGACGTGGCAGAGGCGTGTTTGGGTGTGAAAAGGCAATTAGAGATACTTCAAAGCGAGAATGGGCATCTGAAGAAAGCTGTGGAG GGATTGAGGGAGGAAATTGGTGGAGGGAAATTGTTAATTGGGGAATTGAATTCTGGGAAACTTGAGAGAAATGGAATTAAAAGTGGGAGTAGTGGTTATA AAATTGAAAGGAGAAACAATGAGAAGAAATCAGTAGAAGGAGATGTTAACGAGGAGTTGAAGAAGGCGTTGAAGGGAGCTACCAGTGGTGTTGGTGCTTG A
AA sequence Show only first row Show all	>Potri.006G191800.1 pacid=42766880 polypeptide=Potri.006G191800.1.p locus=Potri.006G191800 ID=Potri.006G191800.1.v4.1 annot-version=v4.1 MKASLKFREEQNPLFRAKVPLSIIGLPFQSGIIAGESKELSLNLSTFFESGPSFKFSYRPNDTWNPFSLVIKTGTGPFGSPVSSSMIMSAEFNLLGKGSN NNNLNPSFMLHFKPQFGDFSIKKSQSSSHVSHVTRSIQNGGVSSDDDGSVEVVEPASPNTTPAVANGMFYGKRIAVLPPVTASAVAGVFSGLEVAARTKL PVRSRAVVNFRWGVRVPAEIKSGSGESTAGINFRKIPFLVMNKVGIEHVDDGDGRSKKEGTTGKVGMEFGNSDVAEACLGVKRQLEILQSENGHLKKAVE GLREEIGGGKLLIGELNSGKLERNGIKSGSSGYKIERRNNEKKSVEGDVNEELKKALKGATSGVGA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G57990			unknown protein		Potri.006G191800 [exp]	0	1
AT4G16430	bHLH	bHLH003, INU3	basic helix-loop-helix (bHLH) ...		Potri.002G042000 [exp]	2.44	0.8897
AT3G07790			DGCR14-related (.1)		Potri.014G164200 [exp]	2.64	0.8977
AT1G15340		MBD10	methyl-CPG-binding domain 10 (...		Potri.006G067700 [exp]	3.46	0.8917
AT1G61040		VIP5	vernalization independence 5, ...		Potri.004G039500 [exp]	6.00	0.8745
AT2G26660		ATSPX2	ARABIDOPSIS THALIANA SPX DOMAI...		Potri.018G028200 [exp]	7.21	0.8228
AT1G10940		ASK1, SNRK2-4, ...	SNF1-related protein kinase 2....		Potri.003G015400 [exp]	13.49	0.8111
AT2G39940		COI1	CORONATINE INSENSITIVE 1, RNI-...		Potri.008G064400 [exp]	17.29	0.8666	COI1.2
AT1G77180		SKIP	chromatin protein family (.1.2...		Potri.018G086100 [exp]	19.97	0.8449
					Potri.002G260800 [exp]	20.78	0.8481
AT5G41950			Tetratricopeptide repeat (TPR)...		Potri.011G050600 [exp]	22.13	0.8081

Compare expression of checked genes

Potri.006G191800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.