Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12130 258 / 6e-86 C3HZnF KH domain-containing protein / zinc finger (CCCH type) family protein (.1) AT5G06770 183 / 9e-57 C3HZnF KH domain-containing protein / zinc finger (CCCH type) family protein (.1) AT3G19360 58 / 2e-09 C3HZnF Zinc finger (CCCH-type) family protein (.1) AT2G35430 48 / 3e-06 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) AT1G32360 46 / 1e-05 C3HZnF Zinc finger (CCCH-type) family protein (.1) AT2G25970 46 / 3e-05 KH domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G046600 [exp] 501 / 0 AT5G06770 265 / 2e-89 KH domain-containing protein / zinc finger (CCCH type) family protein (.1) Potri.001G013200 [exp] 330 / 7e-114 AT5G06770 169 / 2e-51 KH domain-containing protein / zinc finger (CCCH type) family protein (.1) Potri.003G213200 [exp] 328 / 1e-112 AT5G06770 162 / 1e-48 KH domain-containing protein / zinc finger (CCCH type) family protein (.1) Potri.004G169500 [exp] 61 / 3e-10 AT3G19360 284 / 1e-93 Zinc finger (CCCH-type) family protein (.1) Potri.009G130600 [exp] 56 / 6e-09 AT3G19360 276 / 9e-91 Zinc finger (CCCH-type) family protein (.1) Potri.003G061600 [exp] 54 / 4e-08 AT3G19360 109 / 1e-27 Zinc finger (CCCH-type) family protein (.1) Potri.003G093600 [exp] 45 / 3e-05 AT1G32360 353 / 2e-120 Zinc finger (CCCH-type) family protein (.1) Potri.001G140800 [exp] 44 / 8e-05 AT1G32360 355 / 3e-121 Zinc finger (CCCH-type) family protein (.1) Potri.018G055300 [exp] 44 / 0.0002 AT2G25970 319 / 9e-100 KH domain-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004183 [exp] 359 / 1e-123 AT5G06770 261 / 8e-86 KH domain-containing protein / zinc finger (CCCH type) family protein (.1) Lus10021043 [exp] 349 / 4e-121 AT5G06770 262 / 1e-87 KH domain-containing protein / zinc finger (CCCH type) family protein (.1) Lus10016272 [exp] 314 / 2e-107 AT3G12130 229 / 5e-75 KH domain-containing protein / zinc finger (CCCH type) family protein (.1) Lus10012017 [exp] 166 / 6e-51 AT3G12130 186 / 8e-60 KH domain-containing protein / zinc finger (CCCH type) family protein (.1) Lus10012016 [exp] 79 / 9e-19 AT3G12130 73 / 2e-17 KH domain-containing protein / zinc finger (CCCH type) family protein (.1) Lus10012015 [exp] 59 / 2e-11 AT3G12130 66 / 1e-14 KH domain-containing protein / zinc finger (CCCH type) family protein (.1) Lus10043287 [exp] 56 / 1e-08 AT3G19360 290 / 7e-96 Zinc finger (CCCH-type) family protein (.1) Lus10019431 [exp] 53 / 8e-08 AT3G19360 266 / 2e-87 Zinc finger (CCCH-type) family protein (.1) Lus10020998 [exp] 46 / 2e-05 AT2G25970 253 / 2e-76 KH domain-containing protein (.1) Lus10023854 [exp] 46 / 3e-05 AT2G25970 245 / 1e-73 KH domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0007 [poplar] [flax] KH PF00013 [poplar] [flax] KH_1 KH domain CL0537 [poplar] [flax] CCCH_zf PF00642 [poplar] [flax] zf-CCCH Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Representative CDS sequence Show only first row Show all	>Potri.006G191900.2 pacid=42768762 polypeptide=Potri.006G191900.2.p locus=Potri.006G191900 ID=Potri.006G191900.2.v4.1 annot-version=v4.1 ATGATGGATACAAGAAAGAGAGGGAGGCCTGACTTCAAAACTAATGGCTTTGGTGGATTCAAGAAATCTAAGCAAGAAATGGACCCCTTATCAACTGGTG TAGGAAGCAAATTGAAGCCATGCACCAAGTTTTTCAGCACTGCTGGCTGTCCATTTGGTGAGAGCTGCCACTTTCTCCACCATGTTCCTGGTGGCTACAA TGCTGTGACCCAGATGATGAATCTGGGACCTACTGTCACCCCACCATCCAGAAGTATGGTGGCCCCACTGCCAGTCCCTAATGGCTCTGCTTCGTCTGCT GTTAAAGGCCGGCTATGTAACAAATACAGTAGTGCTGAAGGTTGCAAATTTGGTGATAAATGCCGTTTTGCGCATGGTGAGTGGGAACTTGGCAGGGCTT TTGCTCCATCTCACAACAATCCACGTGCTGCTGGAGGTGTTCCAGGACATTTGGGTGGTCGTGTGGAGCAACCTCCTCCTGGCCCTGCTACCAGCTTTGG TGTCTTTGCCACCACTACAAGAATCAGTGTCAATGCCTCTCTTGCTGGATTCATCATTGGTAAGGGTGGTGTGCATTCCATACAGATATGCCACCAAACA GGAGTCAAGCTGTCTATTAAGGAGCATGAAACAAATCCAAATCTCAAGAACATCGAACTTGAGGGGTCATTTGAACAGATTGCCCAAGCTAGCAAGATGG TAGAAGAGCTTGTAAAGGTGAATTCAGCAAAAGCCGCTGCAAAAACCTCTGGGGGCCGTGGGGGGCATGCCAATCCAGGAAGCAACTATAAGACCAAGTT GTGTGACAATTTTGCCAAAGGGTCTTGCACTTTTGGTCAAAGGTGCCATTTTGCTCACGGAGCTGCTGAATTGCGCAAGACAGCAGCGTGA
AA sequence Show only first row Show all	>Potri.006G191900.2 pacid=42768762 polypeptide=Potri.006G191900.2.p locus=Potri.006G191900 ID=Potri.006G191900.2.v4.1 annot-version=v4.1 MMDTRKRGRPDFKTNGFGGFKKSKQEMDPLSTGVGSKLKPCTKFFSTAGCPFGESCHFLHHVPGGYNAVTQMMNLGPTVTPPSRSMVAPLPVPNGSASSA VKGRLCNKYSSAEGCKFGDKCRFAHGEWELGRAFAPSHNNPRAAGGVPGHLGGRVEQPPPGPATSFGVFATTTRISVNASLAGFIIGKGGVHSIQICHQT GVKLSIKEHETNPNLKNIELEGSFEQIAQASKMVEELVKVNSAKAAAKTSGGRGGHANPGSNYKTKLCDNFAKGSCTFGQRCHFAHGAAELRKTAA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G12130	C3HZnF		KH domain-containing protein /...		Potri.006G191900 [exp]	0	1
AT2G32170			S-adenosyl-L-methionine-depend...		Potri.016G021900 [exp]	2.23	0.9166
AT2G32170			S-adenosyl-L-methionine-depend...		Potri.016G021400 [exp]	3.46	0.9134
AT1G73380			unknown protein		Potri.004G067200 [exp]	4.00	0.8946
AT1G52540			Protein kinase superfamily pro...		Potri.001G204000 [exp]	4.58	0.8878
AT5G12840	CCAAT	NF-YA1, ATHAP2A...	"nuclear factor Y, subunit A1"...		Potri.001G257600 [exp]	5.29	0.8729
AT4G31040			CemA-like proton extrusion pro...		Potri.018G150000 [exp]	7.74	0.8889
AT3G03305			Calcineurin-like metallo-phosp...		Potri.008G077000 [exp]	7.93	0.8474
AT1G61670			Lung seven transmembrane recep...		Potri.006G109000 [exp]	8.12	0.8835
AT1G01730			unknown protein		Potri.015G145000 [exp]	8.66	0.8661
AT1G78290		SRK2C, SNRK2-8,...	SNF1-RELATED PROTEIN KINASE 2C...		Potri.005G162500 [exp]	10.72	0.8936

Compare expression of checked genes

Potri.006G191900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.