Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G42140 85 / 4e-21 VQ motif-containing protein (.1) AT3G58000 85 / 4e-21 VQ motif-containing protein (.1) AT2G44340 84 / 1e-20 VQ motif-containing protein (.1) AT3G60090 82 / 5e-20 VQ motif-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G046000 [exp] 239 / 1e-81 AT3G58000 120 / 1e-34 VQ motif-containing protein (.1) Potri.009G024200 [exp] 98 / 3e-26 AT3G58000 73 / 7e-17 VQ motif-containing protein (.1) Potri.001G230800 [exp] 87 / 5e-22 AT2G44340 79 / 6e-19 VQ motif-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004172 [exp] 73 / 1e-15 AT2G42140 72 / 2e-15 VQ motif-containing protein (.1) Lus10021054 [exp] 71 / 3e-15 AT2G44340 76 / 7e-17 VQ motif-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05678 [poplar] [flax] VQ VQ motif
Representative CDS sequence Show only first row Show all	>Potri.006G192100.1 pacid=42768194 polypeptide=Potri.006G192100.1.p locus=Potri.006G192100 ID=Potri.006G192100.1.v4.1 annot-version=v4.1 ATGGAGGATCTTATGATGAGGAAACGACCAGCCTTTATGCCTAGTTCAATCACTCCTGCATCACCACTAACCATGCATAGAGATTCACACACAATAGACA AAGTCAAGCCAAAGATACGCATAATTCACATCTTTGCTCCTGAAATCATCAAGACGGATGTTGCAAACTTCAGAGAGTTGGTGCAAAGACTTACAGGGAA ACCAACTGTTCAAAAGGGGGGTTGCAAGAAGAAAGCAACAAGCGCAAGAACACAGGATCAACCAAGAAACTGCAACAACAACAACAACAACTACTTATGT GACAACAAGCCTGTTATGACCAAGAAAGTTGAGCTAAGGAGCGGGTTTGGGAGTACTTTGGGGTCTAGAGAAAGAGTTAAAGAGGAAGAAGAAATATGGA ATGGTCCAAATTCAGGTGGGTTCTTAGGTGGATTTACAGATTTGGATGGTTTCATTCAAGAGCTTGGTGAATTTCCATTGCTGCCAATGGATGCTAATCA CATGCAAGGGTTCGGGGAGACTCAACTTGCCTAA
AA sequence Show only first row Show all	>Potri.006G192100.1 pacid=42768194 polypeptide=Potri.006G192100.1.p locus=Potri.006G192100 ID=Potri.006G192100.1.v4.1 annot-version=v4.1 MEDLMMRKRPAFMPSSITPASPLTMHRDSHTIDKVKPKIRIIHIFAPEIIKTDVANFRELVQRLTGKPTVQKGGCKKKATSARTQDQPRNCNNNNNNYLC DNKPVMTKKVELRSGFGSTLGSRERVKEEEEIWNGPNSGGFLGGFTDLDGFIQELGEFPLLPMDANHMQGFGETQLA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G42140			VQ motif-containing protein (....		Potri.006G192100 [exp]	0	1
AT3G12580		ATHSP70, HSP70	ARABIDOPSIS HEAT SHOCK PROTEIN...		Potri.008G054900 [exp]	2.64	0.9432	HSP70.7
AT1G75130		CYP721A1	"cytochrome P450, family 721, ...		Potri.005G035200 [exp]	4.89	0.9269
AT3G46660		UGT76E12	UDP-glucosyl transferase 76E12...		Potri.009G038950 [exp]	7.54	0.9023
AT1G75130		CYP721A1	"cytochrome P450, family 721, ...		Potri.014G180500 [exp]	8.36	0.9197
AT5G07010		ATST2A	ARABIDOPSIS THALIANA SULFOTRAN...		Potri.001G036600 [exp]	10.48	0.9255
AT3G18710		ATPUB29	ARABIDOPSIS THALIANA PLANT U-B...		Potri.002G070500 [exp]	16.00	0.9052
AT3G14460			LRR and NB-ARC domains-contain...		Potri.003G200800 [exp]	16.79	0.9242
AT5G10530			Concanavalin A-like lectin pro...		Potri.001G283866 [exp]	16.91	0.9097
AT5G10530			Concanavalin A-like lectin pro...		Potri.001G283208 [exp]	16.91	0.9092
AT5G58240		FHIT	FRAGILE HISTIDINE TRIAD (.1.2)		Potri.013G161100 [exp]	17.60	0.9129

Compare expression of checked genes

Potri.006G192100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.