Plant FIBer expression Database

Potri.006G192200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G42130 361 / 1e-125 Plastid-lipid associated protein PAP / fibrillin family protein (.1.2.3.4.5)
AT3G58010 343 / 2e-118 PGL34 plastoglobulin 34kD (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.016G045900
[exp]
453 / 5e-162 AT2G42130 366 / 1e-127 Plastid-lipid associated protein PAP / fibrillin family protein (.1.2.3.4.5)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10004171
[exp]
372 / 2e-130 AT2G42130 378 / 3e-133 Plastid-lipid associated protein PAP / fibrillin family protein (.1.2.3.4.5)
Lus10012003
[exp]
366 / 2e-127 AT2G42130 383 / 3e-134 Plastid-lipid associated protein PAP / fibrillin family protein (.1.2.3.4.5)
Lus10016263
[exp]
332 / 7e-115 AT2G42130 346 / 1e-120 Plastid-lipid associated protein PAP / fibrillin family protein (.1.2.3.4.5)
Lus10021055
[exp]
261 / 2e-86 AT2G42130 286 / 1e-96 Plastid-lipid associated protein PAP / fibrillin family protein (.1.2.3.4.5)
Lus10001099
[exp]
47 / 1e-05 AT4G22240 362 / 5e-126 Plastid-lipid associated protein PAP / fibrillin family protein (.1)
Lus10014790
[exp]
46 / 2e-05 AT4G22240 363 / 2e-126 Plastid-lipid associated protein PAP / fibrillin family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF04755 PAP_fibrillin PAP_fibrillin
Representative CDS sequence
>Potri.006G192200.1 pacid=42770301 polypeptide=Potri.006G192200.1.p locus=Potri.006G192200 ID=Potri.006G192200.1.v4.1 annot-version=v4.1
ATGGCTTCTTCTTCGTCGTCGTCATCATCATCTTTAATCCAAGGAGGCTCACTTCCTTCATTCTCTGCAATTCGCTCACGCCATTCATCTTCGGCACATT
CTTTTCTACGTTTGACCAAGTTACCGGATAGTGGCCGGAGGAGCTCAGGCTACCGGCGAATGGCCTGCACCGCTATGGTACAACAGGCTGTATATGGGTC
TCCAGCTATTTATGCTAAGGAAATGGAGAGACTCTCTGCTAAAGAATCTCTGCTTCTCGCTTTCAAAGATTCTGGCAGTTTTGAAGCTCTGGTCACTGGA
CAGACAACAGATATGCAGCGGATTGATGTGAACGAAAGGATAAATGGTCTTGAGCGGCTCAATCCAACTCCTCGACCAACTACGTCACCGTTTTTGGAAG
GTAGATGGAATTTTGAGTGGTTTGGAGCTGGAAGCCCTGGATTATTTGCTGCCAGATTTATATTCGAGAGATTTCCTAAAAATTTCGCTAATTTGTCTAA
AATGGACATGGTGATTAAGGATGGAAATGCAAAGGTTACAGCAAATATGAAACTATTATACTCGATAGAAAGCAAATTCATTCTGCTCTCCAAGTTAACT
GTGGAGGGACCTCTTAGAATGAAAGAGGAATATGTTGAAGGGATTCTTGAGACACCAACCATCATTGAAGAAACAGTACCAGAACAGCTAAAAGGTGCAT
TTGGTCAGGCTGTTCACACAGTGCAACAACTTCCTGTTCCTATTAGGGATTCCTTTTCTAGCGGGCTGAAAATTCCTCTAACCAGTACTTTCCAGAGACT
CTTCATGATTTCGTATCTTGATGATGAAATACTTATAGTAAGGGATGCTGCTGGAGTACCTGAAGTTCTTACAAGGCTGGATGCACCAGCCTCTCCAATG
GCAGAACCAACTGCAGAGTATGAGAGCTAG
AA sequence
>Potri.006G192200.1 pacid=42770301 polypeptide=Potri.006G192200.1.p locus=Potri.006G192200 ID=Potri.006G192200.1.v4.1 annot-version=v4.1
MASSSSSSSSSLIQGGSLPSFSAIRSRHSSSAHSFLRLTKLPDSGRRSSGYRRMACTAMVQQAVYGSPAIYAKEMERLSAKESLLLAFKDSGSFEALVTG
QTTDMQRIDVNERINGLERLNPTPRPTTSPFLEGRWNFEWFGAGSPGLFAARFIFERFPKNFANLSKMDMVIKDGNAKVTANMKLLYSIESKFILLSKLT
VEGPLRMKEEYVEGILETPTIIEETVPEQLKGAFGQAVHTVQQLPVPIRDSFSSGLKIPLTSTFQRLFMISYLDDEILIVRDAAGVPEVLTRLDAPASPM
AEPTAEYES

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G42130 Plastid-lipid associated prote... Potri.006G192200
[exp]
0 1
AT4G01150 unknown protein Potri.002G166800
[exp]
11.48 0.9399 CAM2.2
AT5G53970 TAT7 tyrosine aminotransferase 7, T... Potri.017G013900
[exp]
13.07 0.9338 AMT2
AT5G14910 Heavy metal transport/detoxifi... Potri.001G350500
[exp]
20.19 0.9360
AT4G13220 unknown protein Potri.002G251800
[exp]
32.68 0.9332
AT4G04640 ATPC1 ATPase, F1 complex, gamma subu... Potri.004G014850
[exp]
40.02 0.9320
AT4G09650 PDE332, ATPD PIGMENT DEFECTIVE 332, ATP syn... Potri.019G087300
[exp]
40.69 0.9310
AT4G21445 unknown protein Potri.011G041800
[exp]
42.74 0.9311
AT3G63410 VTE3, APG1, IEP... VITAMIN E DEFECTIVE 3, INNER E... Potri.002G047100
[exp]
47.48 0.9299
AT1G78630 EMB1473 embryo defective 1473, Ribosom... Potri.001G384600
[exp]
54.77 0.9300
AT5G51110 Transcriptional coactivator/pt... Potri.015G110500
[exp]
54.99 0.9266

Potri.006G192200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.