Plant FIBer expression Database

Potri.006G192400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G42120 704 / 0 POLD2 DNA polymerase delta small subunit (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.016G045800
[exp]
809 / 0 AT2G42120 724 / 0.0 DNA polymerase delta small subunit (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10016262
[exp]
676 / 0 AT2G42120 672 / 0.0 DNA polymerase delta small subunit (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0163 Calcineurin PF04042 DNA_pol_E_B DNA polymerase alpha/epsilon subunit B
Representative CDS sequence
>Potri.006G192400.1 pacid=42769572 polypeptide=Potri.006G192400.1.p locus=Potri.006G192400 ID=Potri.006G192400.1.v4.1 annot-version=v4.1
ATGACTGGAATGGAAATCGACATTGAGAAAAATATCCAGAGAAAGCGTTCTACTTACCAATCTCTGGATGAGACCTTTGATATTCAAAACGAGACCTATA
GAGGCCAGCAATATAGTCAAATATATTTCGCTCGTCTTCACTTGATGAGAACTCTGCTTTACTCTCTCGTTACCCATTGGAAACCCCATGTCCCTGTTTG
TACGGTTTTGGGGTTGGAAGAAGGCAAGGAATGCATCATTGTTGGGACCCTGTACAAGCACATGAAACTTAAACCTTGTGTCCTTGATGAATATTCTAAG
GAGAGATCTGCAGTGCCTCTTGTCAAGCCTCATAACTTCATGCATCCGGATGATCATTTGGTTTTGGAAGATGAAAGTGGAAGAGTTAAGCTTGGTGGCA
CCGTGCTTTCACCTTCAAAATATGTTACAGGCGGTGTCGTTGCTTTGCATGGAAAGGAAACTACTGCTGGTGACTTTTTGGTTCTAGATGTCTTTGAAGC
TGGTTTAGCACCACAAATAGAGCCCCAACTTAAATCAAGAGAGGACAAGTATGTTGTTTTTGTTTCTGGGGTAAGTGTTGGAAGCAGCACATCAAATCCT
CTCCAATTTCAGCTTCTTGTGGATCATATAACAGGACATCTGGGAGATGATCAGGAACAGGGTATTGCGGCAGAGATAGTTCATGTTGTGTTTGCAGGTA
ATTCAGTGGAAATTCCATCTGGTCTTCTAAATGGACAGAATTTGGCTTCAAAGGATCAATCTAGGCTCTCTGAACCAGTTCAAGAGCTGGATATTTGGTT
GACTCAGATTGCTGCAGGTGTGTCTGTGGATATCATGCCAGGATCAAATGATCCAGCAAACTTTGCTTTACCTCAACAGCCTTTGAACAGATGCCTTTTT
CCTGGATCAAGAGCTTATAACACTTTTAATTTGTGTACTAATCCTCATTGTTTTGAGCTTGATGGTGTCAGGTTTCTTGGAACATCAGGCCAGAACATTG
ATGATCTGAAAAAGTATTCGGAAGCAAGGGATGAGCTTGAATTTATGGAAAGGACATTAAAGTGGAGGCATCTGGCACCAACAGCACCTAACACACTCGG
TTGTTATCCTTTCACTGATAAGGATCCTTTTTTGATTGAGAGCTGTCCGCATGTTTACTTTGTTGGTAACCAAGATAAATATGGAACTCACATTTTAAAC
GGTTCAGAAGGGCAGTTGGTGAGACTTATTTCCGTTCCTAAATTCTGTGATACTGGAATTGCGGTTGTGCTTAATCTGAGAAATCTGGAATGCCATACTC
TCAGTTTTGGTGCTCAATTCAGCCCTTAA
AA sequence
>Potri.006G192400.1 pacid=42769572 polypeptide=Potri.006G192400.1.p locus=Potri.006G192400 ID=Potri.006G192400.1.v4.1 annot-version=v4.1
MTGMEIDIEKNIQRKRSTYQSLDETFDIQNETYRGQQYSQIYFARLHLMRTLLYSLVTHWKPHVPVCTVLGLEEGKECIIVGTLYKHMKLKPCVLDEYSK
ERSAVPLVKPHNFMHPDDHLVLEDESGRVKLGGTVLSPSKYVTGGVVALHGKETTAGDFLVLDVFEAGLAPQIEPQLKSREDKYVVFVSGVSVGSSTSNP
LQFQLLVDHITGHLGDDQEQGIAAEIVHVVFAGNSVEIPSGLLNGQNLASKDQSRLSEPVQELDIWLTQIAAGVSVDIMPGSNDPANFALPQQPLNRCLF
PGSRAYNTFNLCTNPHCFELDGVRFLGTSGQNIDDLKKYSEARDELEFMERTLKWRHLAPTAPNTLGCYPFTDKDPFLIESCPHVYFVGNQDKYGTHILN
GSEGQLVRLISVPKFCDTGIAVVLNLRNLECHTLSFGAQFSP

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G42120 POLD2 DNA polymerase delta small sub... Potri.006G192400
[exp]
0 1
AT5G26680 5'-3' exonuclease family prote... Potri.013G000700
[exp]
5.83 0.7520
AT4G31360 selenium binding (.1) Potri.018G004901
[exp]
11.13 0.7965
AT3G13560 O-Glycosyl hydrolases family 1... Potri.001G006500
[exp]
11.53 0.8018
AT5G27740 RFC3, EMB251, E... replication factor C 3, EMBRYO... Potri.019G040000
[exp]
19.74 0.7880
AT5G58600 TBL44, PMR5 TRICHOME BIREFRINGENCE-LIKE 44... Potri.009G072800
[exp]
21.63 0.7326
AT1G66250 O-Glycosyl hydrolases family 1... Potri.017G130200
[exp]
24.49 0.7374
AT1G54690 HTA3 ,G-H2AX ,G... histone H2A 3, GAMMA H2AX, gam... Potri.005G040800
[exp]
26.26 0.7716
AT1G10380 Putative membrane lipoprotein ... Potri.010G158500
[exp]
26.83 0.7726
AT1G67630 EMB2814, POLA2 EMBRYO DEFECTIVE 2814, DNA pol... Potri.010G055900
[exp]
27.05 0.7913
AT5G20850 ATRAD51 RAS associated with diabetes p... Potri.006G135200
[exp]
29.39 0.7916

Potri.006G192400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.