Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06750 572 / 0 Protein phosphatase 2C family protein (.1.2.3) AT5G66080 412 / 2e-143 Protein phosphatase 2C family protein (.1) AT3G51370 406 / 8e-141 Protein phosphatase 2C family protein (.1.2) AT3G12620 398 / 9e-138 Protein phosphatase 2C family protein (.1.2) AT3G17090 397 / 2e-137 Protein phosphatase 2C family protein (.1.2) AT4G38520 392 / 3e-135 Protein phosphatase 2C family protein (.1.2) AT4G33920 388 / 1e-133 Protein phosphatase 2C family protein (.1) AT3G55050 379 / 4e-130 Protein phosphatase 2C family protein (.1.2) AT5G02760 356 / 3e-121 Protein phosphatase 2C family protein (.1) AT3G16560 135 / 3e-35 Protein phosphatase 2C family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G045600 [exp] 707 / 0 AT5G06750 578 / 0.0 Protein phosphatase 2C family protein (.1.2.3) Potri.004G177100 [exp] 414 / 6e-144 AT4G38520 608 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.005G108500 [exp] 414 / 1e-143 AT3G51370 646 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.009G137400 [exp] 410 / 2e-142 AT4G38520 657 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.007G061100 [exp] 406 / 9e-141 AT3G51370 590 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.001G297200 [exp] 402 / 4e-139 AT4G33920 563 / 0.0 Protein phosphatase 2C family protein (.1) Potri.009G091600 [exp] 398 / 1e-137 AT4G33920 561 / 0.0 Protein phosphatase 2C family protein (.1) Potri.008G104300 [exp] 392 / 2e-135 AT3G17090 568 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.010G214700 [exp] 386 / 7e-133 AT3G12620 542 / 0.0 Protein phosphatase 2C family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004170 [exp] 577 / 0 AT5G06750 518 / 0.0 Protein phosphatase 2C family protein (.1.2.3) Lus10021056 [exp] 576 / 0 AT5G06750 515 / 0.0 Protein phosphatase 2C family protein (.1.2.3) Lus10041861 [exp] 412 / 5e-143 AT3G51370 630 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10027825 [exp] 400 / 2e-138 AT4G38520 586 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10005054 [exp] 399 / 6e-138 AT4G38520 582 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10023470 [exp] 393 / 1e-135 AT3G12620 612 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10040346 [exp] 390 / 1e-134 AT3G12620 616 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10011521 [exp] 387 / 1e-133 AT4G33920 483 / 2e-171 Protein phosphatase 2C family protein (.1) Lus10019893 [exp] 387 / 1e-133 AT3G12620 470 / 2e-166 Protein phosphatase 2C family protein (.1.2) Lus10025076 [exp] 388 / 2e-133 AT4G38520 609 / 0.0 Protein phosphatase 2C family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0238 [poplar] [flax] PP2C PF00481 [poplar] [flax] PP2C Protein phosphatase 2C
Representative CDS sequence Show only first row Show all	>Potri.006G192600.3 pacid=42770476 polypeptide=Potri.006G192600.3.p locus=Potri.006G192600 ID=Potri.006G192600.3.v4.1 annot-version=v4.1 ATGTTGTCGTGGCTAACAAGAATAGCAATGGCTTGTTGGAGACCGGGGAGGCAATATGCACGTATGAGCAAGGATGACATTTTAAATGATGATGATGATT CTACTACTGGCGACTCTCTTCTATGGTCTAGAGACCTTGAGAAACACTCTTTTGGAGAGTTCTCTTTTGCTGTGGTTCAAGCCAATGAGGTTATTGAAGA TCATAGTCAAGTAGAGAGTGGTCGTGATGCTACTTTTATTGGTGTTTATGATGGTCATGGTGGACCTGATGCGTCTCGGTTCATATCTGACCATTTGTTC TTAAATCTCATGAGGCATGCCAGAGAAAGAGGAACCATCTCTGAAGAAATCCTTAGAAGTGCCATCTCTTCAACTGAGGATGGGTTTCTTACTCTTGTCC GTAGGTCATGTGGAATAAAACCATTGATTGCAGCAGTTGGATCTTGTTGCTTGGTTGGAGTCATCTGGAGAGGGACATTATTTGTTGCTAATCTCGGTGA TTCTCGAGCTGTAATTGGCTCTTTAGGTAGATCGAATAAGATAGTTGCCGAGCAGTTGACCAGGGATCATAATGCTAGTATGGAAGAGGTTAGACAAGAA CTAAAATCCTTGCATCCAGATGATTCACATATTGTTGTTATGAAGCATGGAGTGTGGCGAATCAAAGGCATTATTCAGGTATCTAGATCTATAGGTGATG CATACTTGAAGCGGCCTGAGTTTTCTCTTGATCCTTCTTTTCCACGATTTCACCTCCCTGAACCCATTCGTCGGCCTGTGCTAACATCGGAACCATCCAT ATACTCAAGGGTTTTACGACCCAATGATAAATTTGTCATATTTGCATCCGATGGGCTGTGGGAACACCTAACAAACCAGGAGGCAGTGGAGATTGTGTAC AATAATCCACGAGCTGGAATTGCAAGGAGACTAGTAAGAGCAGCTCTAAATATGGCAGCTAGGAAGAGGGTGATGAGGTATGATGATCTTAAGAAGGTTG ATAGGGGGGTCAGGCGTTTTTTTCATGATGATATAACAGTAGTTGTGATCTTTATAGACCATGAGTTGCTAGGAAATAGTACATCTGTGCCAGAGATGTC AGTGCGAGGGTTTATCGACACTGTTGGACCATCAAACTTTAACTTTCTTCAAGGAGTTGACGCTAATGCCCGGTCCATCATCTAA
AA sequence Show only first row Show all	>Potri.006G192600.3 pacid=42770476 polypeptide=Potri.006G192600.3.p locus=Potri.006G192600 ID=Potri.006G192600.3.v4.1 annot-version=v4.1 MLSWLTRIAMACWRPGRQYARMSKDDILNDDDDSTTGDSLLWSRDLEKHSFGEFSFAVVQANEVIEDHSQVESGRDATFIGVYDGHGGPDASRFISDHLF LNLMRHARERGTISEEILRSAISSTEDGFLTLVRRSCGIKPLIAAVGSCCLVGVIWRGTLFVANLGDSRAVIGSLGRSNKIVAEQLTRDHNASMEEVRQE LKSLHPDDSHIVVMKHGVWRIKGIIQVSRSIGDAYLKRPEFSLDPSFPRFHLPEPIRRPVLTSEPSIYSRVLRPNDKFVIFASDGLWEHLTNQEAVEIVY NNPRAGIARRLVRAALNMAARKRVMRYDDLKKVDRGVRRFFHDDITVVVIFIDHELLGNSTSVPEMSVRGFIDTVGPSNFNFLQGVDANARSII

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G06750			Protein phosphatase 2C family ...		Potri.006G192600 [exp]	0	1
AT4G28600		NPGR2	no pollen germination related ...		Potri.008G169500 [exp]	8.48	0.6949	NPGR2.2
AT5G48130			Phototropic-responsive NPH3 fa...		Potri.014G164000 [exp]	16.30	0.7822
AT5G54590		CRLK1	calcium/calmodulin-regulated r...		Potri.004G235700 [exp]	17.26	0.7657
AT4G40050			Protein of unknown function (D...		Potri.005G072200 [exp]	21.07	0.7092
AT2G29040			Exostosin family protein (.1)		Potri.009G032500 [exp]	24.81	0.7440
AT4G00120	bHLH	IND1, GT140, bH...	INDEHISCENT, EMBRYO SAC DEVELO...		Potri.005G060900 [exp]	42.60	0.6621
AT1G61260			Protein of unknown function (D...		Potri.015G028700 [exp]	42.73	0.7308
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Potri.004G146900 [exp]	46.19	0.6549
AT5G10970	C2H2ZnF		C2H2 and C2HC zinc fingers sup...		Potri.003G180600 [exp]	46.73	0.7196
AT4G36930	bHLH	SPT, bHLH024	SPATULA, basic helix-loop-heli...		Potri.002G124400 [exp]	47.32	0.7071	Pt-ALC.1

Compare expression of checked genes

Potri.006G192600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.