Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-ACT2.4
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12110 767 / 0 ACT11 actin-11 (.1) AT3G53750 766 / 0 ACT3 actin 3 (.1) AT2G37620 766 / 0 AAC1, ACT1 ARABIDOPSIS ACTIN 1, actin 1 (.1.2) AT5G09810 764 / 0 ACT2/7, ACT7 actin 7 (.1) AT3G46520 762 / 0 ACT12 actin-12 (.1) AT5G59370 761 / 0 ACT4 actin 4 (.1.2) AT3G18780 745 / 0 FIZ2, LSR2, ENL2, DER1, ACT2 LIGHT STRESS-REGULATED 2, FRIZZY AND KINKED SHOOTS 2, ENHANCER OF LRX1 2, DEFORMED ROOT HAIRS 1, actin 2 (.1.2) AT1G49240 743 / 0 FIZ1, ACT8 FRIZZY AND KINKED SHOOTS, actin 8 (.1) AT2G42100 675 / 0 Actin-like ATPase superfamily protein (.1) AT2G42090 566 / 0 ACT9 actin 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G045500 [exp] 784 / 0 AT3G12110 767 / 0.0 actin-11 (.1) Potri.010G204300 [exp] 778 / 0 AT3G12110 733 / 0.0 actin-11 (.1) Potri.008G055500 [exp] 777 / 0 AT3G12110 765 / 0.0 actin-11 (.1) Potri.019G010400 [exp] 771 / 0 AT5G09810 774 / 0.0 actin 7 (.1) Potri.001G309500 [exp] 769 / 0 AT5G09810 775 / 0.0 actin 7 (.1) Potri.001G453600 [exp] 764 / 0 AT5G09810 769 / 0.0 actin 7 (.1) Potri.011G148000 [exp] 726 / 0 AT5G09810 731 / 0.0 actin 7 (.1) Potri.006G139900 [exp] 571 / 0 AT5G09810 554 / 0.0 actin 7 (.1) Potri.001G326600 [exp] 353 / 3e-120 AT3G27000 758 / 0.0 WURM, actin related protein 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005457 [exp] 781 / 0 AT3G12110 768 / 0.0 actin-11 (.1) Lus10040826 [exp] 781 / 0 AT3G12110 768 / 0.0 actin-11 (.1) Lus10016558 [exp] 781 / 0 AT3G12110 768 / 0.0 actin-11 (.1) Lus10029286 [exp] 777 / 0 AT3G46520 768 / 0.0 actin-12 (.1) Lus10001694 [exp] 776 / 0 AT3G12110 766 / 0.0 actin-11 (.1) Lus10016259 [exp] 776 / 0 AT3G46520 767 / 0.0 actin-12 (.1) Lus10005163 [exp] 776 / 0 AT3G12110 766 / 0.0 actin-11 (.1) Lus10006783 [exp] 766 / 0 AT5G09810 778 / 0.0 actin 7 (.1) Lus10005820 [exp] 766 / 0 AT5G09810 778 / 0.0 actin 7 (.1) Lus10005819 [exp] 766 / 0 AT5G09810 778 / 0.0 actin 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0108 [poplar] [flax] Actin_ATPase PF00022 [poplar] [flax] Actin Actin
Representative CDS sequence Show only first row Show all	>Potri.006G192700.1 pacid=42768609 polypeptide=Potri.006G192700.1.p locus=Potri.006G192700 ID=Potri.006G192700.1.v4.1 annot-version=v4.1 ATGGCAGAAAGTGAAGATATTCAGCCTCTTGTTTGCGACAATGGTACCGGAATGGTCAAGGCTGGGTTTGCCGGAGATGATGCACCAAGGGCTGTTTTCC CTAGCATTGTGGGTCGCCCACGCCACACCGGTGTGATGGTTGGTATGGGTCAAAAGGATGCGTATGTTGGTGATGAGGCACAATCAAAGAGAGGTATTTT GACTTTGAAATACCCAATTGAGCATGGTATTGTTAGCAATTGGGATGATATGGAGAAGATTTGGCATCACACCTTCTACAATGAGCTCCGTGTGGCTCCT GAAGAGCATCCGGTTCTTCTTACAGAAGCTCCTCTTAACCCAAAAGCCAATCGTGAGAAAATGACCCAGATCATGTTTGAGACCTTCAACACTCCCGCAA TGTACGTTGCTATCCAGGCTGTCCTTTCCCTTTATGCCAGTGGTCGTACAACTGGTATTGTTCTGGACTCTGGAGATGGTGTGAGTCACACAGTTCCCAT CTATGAAGGCTATGCCCTCCCACATGCCATTCTGCGTCTTGACCTGGCAGGCCGTGATCTCACTGATGCCCTAATGAAAATCTTGACTGAACGTGGCTAC TCCTTCACCACCACTGCAGAGCGTGAAATTGTAAGGGACATGAAGGAGAAACTAGCCTACATTGCTCTTGATTATGAGCAAGAGCTGGAGACAGCAAAGA CCAGCTCATCTGTTGAGAAGAGCTATGAACTTCCAGATGGGCAGGTTATCACCATTGGAGCTGAAAGATTCCGTTGTCCAGAGGTCCTCTTCCAACCATC CATGATAGGGATGGAAGCTGCTGGCATACATGAAACAACATACAATTCTATCATGAAGTGTGATGTCGATATTAGGAAGGATCTCTATGGCAATATTGTT CTCAGTGGTGGCTCTACTATGTTCCCAGGCATTGCTGATAGGATGAGCAAGGAAATTACAGCATTGGCTCCCAGTAGCATGAAGATTAAGGTGGTTGCAC CACCAGAAAGGAAGTACAGTGTCTGGATAGGAGGCTCCATTTTGGCATCCCTCAGCACCTTCCAGCAGATGTGGATTGCAAAGGCAGAGTATGATGAGTC CGGTCCATCAATTGTCCACAGGAAGTGCTTTTAA
AA sequence Show only first row Show all	>Potri.006G192700.1 pacid=42768609 polypeptide=Potri.006G192700.1.p locus=Potri.006G192700 ID=Potri.006G192700.1.v4.1 annot-version=v4.1 MAESEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAP EEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGY SFTTTAEREIVRDMKEKLAYIALDYEQELETAKTSSSVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIV LSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G12110		ACT11	actin-11 (.1)		Potri.006G192700 [exp]	0	1	Pt-ACT2.4
AT2G45470		AGP8, FLA8	FASCICLIN-like arabinogalactan...		Potri.014G071700 [exp]	1.41	0.9558	Pt-FLA8.1
AT3G61640		AGP20, ATAGP20	arabinogalactan protein 20 (.1...		Potri.014G094800 [exp]	2.82	0.9501	AGP20.1
AT4G12420		SKU5	Cupredoxin superfamily protein...		Potri.003G112700 [exp]	3.00	0.9503	Pt-SKU5.1
AT5G58480			O-Glycosyl hydrolases family 1...		Potri.009G076500 [exp]	3.16	0.9366
					Potri.006G055800 [exp]	3.46	0.9469
AT1G11680		EMB1738, CYP51A...	embryo defective 1738, CYTOCHR...		Potri.001G068400 [exp]	3.74	0.9419	CYP51.2
AT4G01730			DHHC-type zinc finger family p...		Potri.014G112000 [exp]	4.24	0.9614
AT1G23790			Plant protein of unknown funct...		Potri.008G192300 [exp]	7.07	0.9471
AT5G56590			O-Glycosyl hydrolases family 1...		Potri.005G253900 [exp]	8.60	0.9144
AT1G67180			zinc finger (C3HC4-type RING f...		Potri.004G106000 [exp]	11.57	0.9033

Compare expression of checked genes

Potri.006G192700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.