Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G42070 352 / 2e-122 ATNUDX23, ATNUDT23 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 23, nudix hydrolase homolog 23 (.1) AT5G20070 50 / 1e-06 ATNUDX19, ATNUDT19 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 19, nudix hydrolase homolog 19 (.1) AT1G68760 40 / 0.0005 ATNUDX1, ATNUDT1 NUDIX HYDROLASE 1, ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 1, nudix hydrolase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G045300 [exp] 480 / 5e-173 AT2G42070 353 / 3e-123 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 23, nudix hydrolase homolog 23 (.1) Potri.006G154200 [exp] 49 / 3e-06 AT5G20070 590 / 0.0 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 19, nudix hydrolase homolog 19 (.1) Potri.018G070400 [exp] 47 / 7e-06 AT5G20070 609 / 0.0 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 19, nudix hydrolase homolog 19 (.1) Potri.001G368000 [exp] 41 / 0.0006 AT5G47650 342 / 6e-119 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029289 [exp] 394 / 3e-139 AT2G42070 355 / 5e-124 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 23, nudix hydrolase homolog 23 (.1) Lus10030056 [exp] 52 / 4e-07 AT5G20070 594 / 0.0 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 19, nudix hydrolase homolog 19 (.1) Lus10014493 [exp] 51 / 4e-07 AT5G20070 590 / 0.0 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 19, nudix hydrolase homolog 19 (.1) Lus10016257 [exp] 49 / 3e-06 AT5G06740 638 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0261 [poplar] [flax] NUDIX PF00293 [poplar] [flax] NUDIX NUDIX domain CL0167 [poplar] [flax] Zn_Beta_Ribbon PF14803 [poplar] [flax] Nudix_N_2 Nudix N-terminal
Representative CDS sequence Show only first row Show all	>Potri.006G192800.2 pacid=42769042 polypeptide=Potri.006G192800.2.p locus=Potri.006G192800 ID=Potri.006G192800.2.v4.1 annot-version=v4.1 ATGCTAAAAGCAATACAGAATCTTGGTTCATCAACAACAACAACCACAACAACAACAACAGGGTTTGTGGCATCTTTTTATAGATTGAAACCACCACATG CCACCACAACTAGTGCTTTTGTCTCAATTTCTTCCAGCCTGTTATCCTATTATTCTCCAAGAACCAGACCCACAAAGCCTCTTCTGTTTTTGACTCGAAA GACTCGATCTTTGGAACCTGTTCGTGCTCACTCAACTCGGTCTGAGTCTAAGATGGATGGCACTTCTTCTTCTTCATCAGTTGCTGTTCAGTCATCTGGA AGTGTACGCAAGATCAATTTCTGTCAGTGGTGTGGTGGCCAGACAAAACATGATATACCTGATGGGGAGGAAAAGATGAGAGCTATTTGCACAGTTTGTG GGAAAATTACCTATCAAAACCCTAAAATGGTGGTGGGATGCCTCATTGAGCATGATAACAAGGTCCTACTCTGCAAGCGAAACATCCAACCATCATTTGG CCTCTGGACCCTTCCTGCTGGTTACTTGGAAATTGGTGAGTCTGCTGCAGAAGGGGCAATCAGGGAAACCTGGGAGGAAGCACACGCAGAAGTGGAAGTC GTGTCACCCTTTGCTCATTTGGACATCCCTCTTATTGGCCAAACTTACATAATTTTCTTGGCAAAGCTGAGGAAGCCCCACTTTTCACCTGGACCAGAGT CATTGGAGTGCCAACTTTTTTCGCTAGATGATATACCTTTCGATTCTTTGGCATTTTCATCAATGGCGGTTACTTTAAAGTTGTACATTGAAGATGTTAA AGCTGGAAGTCGAAAATTTCACTACGGCACAATTAACAAAAGGCCTGGCTCGAGCCCTTCTGATACCCATGCCTATACTCTCGATAATCATTTGCAGTCT TGA
AA sequence Show only first row Show all	>Potri.006G192800.2 pacid=42769042 polypeptide=Potri.006G192800.2.p locus=Potri.006G192800 ID=Potri.006G192800.2.v4.1 annot-version=v4.1 MLKAIQNLGSSTTTTTTTTTGFVASFYRLKPPHATTTSAFVSISSSLLSYYSPRTRPTKPLLFLTRKTRSLEPVRAHSTRSESKMDGTSSSSSVAVQSSG SVRKINFCQWCGGQTKHDIPDGEEKMRAICTVCGKITYQNPKMVVGCLIEHDNKVLLCKRNIQPSFGLWTLPAGYLEIGESAAEGAIRETWEEAHAEVEV VSPFAHLDIPLIGQTYIIFLAKLRKPHFSPGPESLECQLFSLDDIPFDSLAFSSMAVTLKLYIEDVKAGSRKFHYGTINKRPGSSPSDTHAYTLDNHLQS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G42070		ATNUDX23, ATNUD...	ARABIDOPSIS THALIANA NUDIX HYD...		Potri.006G192800 [exp]	0	1
AT1G62710		BETAVPE, BETA-V...	beta vacuolar processing enzym...		Potri.001G119800 [exp]	7.07	0.6186
AT1G80940			unknown protein		Potri.003G184925 [exp]	15.29	0.6381
AT3G54300		ATVAMP727	vesicle-associated membrane pr...		Potri.008G019400 [exp]	26.26	0.5895	VAMP727.1
AT1G25682			Family of unknown function (DU...		Potri.008G115700 [exp]	26.73	0.5894
AT3G57810			Cysteine proteinases superfami...		Potri.016G050900 [exp]	27.12	0.6244
AT1G21790			TRAM, LAG1 and CLN8 (TLC) lipi...		Potri.005G178200 [exp]	28.98	0.5539
AT1G02610			RING/FYVE/PHD zinc finger supe...		Potri.014G121900 [exp]	35.21	0.5326
AT1G53120			RNA-binding S4 domain-containi...		Potri.011G119800 [exp]	39.64	0.5721
AT4G31130			Protein of unknown function (D...		Potri.006G280900 [exp]	45.72	0.5592
AT5G45360			F-box family protein (.1)		Potri.004G236200 [exp]	52.49	0.5719

Compare expression of checked genes

Potri.006G192800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.