Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06740 688 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT5G55830 352 / 5e-112 Concanavalin A-like lectin protein kinase family protein (.1) AT4G02420 340 / 1e-107 Concanavalin A-like lectin protein kinase family protein (.1) AT5G10530 339 / 1e-107 Concanavalin A-like lectin protein kinase family protein (.1) AT3G55550 335 / 2e-105 Concanavalin A-like lectin protein kinase family protein (.1) AT3G53810 329 / 2e-103 Concanavalin A-like lectin protein kinase family protein (.1) AT4G02410 327 / 9e-103 Concanavalin A-like lectin protein kinase family protein (.1) AT5G03140 325 / 1e-101 Concanavalin A-like lectin protein kinase family protein (.1) AT5G60320 320 / 7e-100 Concanavalin A-like lectin protein kinase family protein (.1) AT5G60280 317 / 6e-99 Concanavalin A-like lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G045000 [exp] 1025 / 0 AT5G06740 702 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.004G209300 [exp] 430 / 4e-142 AT5G06740 368 / 3e-118 Concanavalin A-like lectin protein kinase family protein (.1) Potri.011G146500 [exp] 413 / 7e-136 AT5G06740 411 / 5e-135 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G455500 [exp] 407 / 2e-133 AT5G06740 416 / 1e-136 Concanavalin A-like lectin protein kinase family protein (.1) Potri.007G004200 [exp] 363 / 3e-116 AT5G10530 570 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.011G093700 [exp] 355 / 5e-113 AT5G55830 849 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.009G035500 [exp] 354 / 5e-113 AT3G53810 598 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.018G028800 [exp] 353 / 1e-112 AT5G06740 371 / 1e-119 Concanavalin A-like lectin protein kinase family protein (.1) Potri.006G088600 [exp] 351 / 8e-112 AT2G37710 808 / 0.0 receptor lectin kinase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004166 [exp] 708 / 0 AT5G06740 682 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10021060 [exp] 701 / 0 AT5G06740 667 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10016257 [exp] 585 / 0 AT5G06740 638 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10036986 [exp] 488 / 4e-167 AT5G06740 456 / 8e-155 Concanavalin A-like lectin protein kinase family protein (.1) Lus10009423 [exp] 425 / 4e-139 AT5G06740 446 / 2e-147 Concanavalin A-like lectin protein kinase family protein (.1) Lus10028699 [exp] 417 / 8e-137 AT5G06740 455 / 1e-151 Concanavalin A-like lectin protein kinase family protein (.1) Lus10020452 [exp] 380 / 1e-122 AT5G10530 510 / 2e-173 Concanavalin A-like lectin protein kinase family protein (.1) Lus10007077 [exp] 374 / 1e-118 AT5G10530 511 / 4e-171 Concanavalin A-like lectin protein kinase family protein (.1) Lus10020446 [exp] 370 / 1e-118 AT5G10530 516 / 2e-175 Concanavalin A-like lectin protein kinase family protein (.1) Lus10040774 [exp] 343 / 8e-109 AT3G53810 713 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0004 [poplar] [flax] Concanavalin PF00139 [poplar] [flax] Lectin_legB Legume lectin domain
Representative CDS sequence Show only first row Show all	>Potri.006G193000.1 pacid=42769884 polypeptide=Potri.006G193000.1.p locus=Potri.006G193000 ID=Potri.006G193000.1.v4.1 annot-version=v4.1 ATGCGCTTTCCCCTGGCAGCCACTTCTGCAATCCTGGCTGTCTTCTTGGCTCTTGCTCAAGAACAGAGCCTTGCTTTTGAGTTTCCAAACTTCACGATTC AAGATCAGCCTCAACTTATTTTGAGTGACAATTCTTCTATAGCCCTCGGCGCCATCCAAGTCACAGCAGATACTCGTGGAGCTAGCATAGAAAACAGGGC TGGAAGGACCCTGTACGGAAGGCCATTCAGGCTGTGGAGCAAGAAGGGGAAGAAAGCAAATTTCAATACGACCTTCGTACTCAATGTCAAAAGCATGACA GCTTCAAGTGGTGAAGGCTTGGCCTTTATATTAACAGGAGATCCTGACGTTCCAGGTGGAAGCGATGGACAATGGCTTGGGATTGTAAATTCCAGGTTAA ATGGAACCACTGAAGCGAAGACAGTGGCGATAGAATTTGACACTAAAAAAAGCTTCCCAGAAGATCTTGACGATAACCATATTGGATTGGATATAAACAG TGTCTACTCGAAAAGATCGGTTTCGTTAAATGATAGAGGTATTTATATTTCTGCGGGCACGGATATCAAGGTAGTTGTTCAATATGACGGCAAGAATTTG ATTGTTTTTGTCGGTGACGACATGAAGAATCCAGTTCTCTCTGAGCCTCTCGATCTCTCAGCCTATCTTCCAGAAATGGTGTATGTGGGATTTTCGGGTT CAACTAGTAATAACACTCAATTAAATTGTGTTAGGTCGTGGGAGTTTAACCATTCTGAGGTAAAAGATTCCAAGTTGCGGTGGGTTTGGATTTTGGTTGC TGTAGGATCAGTGCTAATCCTGTTGATTGGTATTGGTATCGCCTTTTTCTTGTACAGGAAAAGGGGATATGAAGGAAATAGGGTGGAGAATACTTGTCCA AATATTGAAGAGGCAATCCTAGGCTTCTCAACTGCTCCGAAGAAGTTCAAATTCAAAGAACTTAGCAAAGCAACAGGCAAATTCAACCCTAAAAACAAGC TCGGGAAAGGTGGCTTCGGGACAGTCTACAAGGGAATCTTGGGAAAAAAGGAAGTTGCTGTCAAAAGAGTCTCAAAGAAATCAACCCAAGGAAAGCAAGA GTTCATTGCAGAAGTCACTACAATAGGCCACATCCATCACCGAAATCTTGTTAAGCTGATCGGGTGGTGCCACGAAAAGCGCGAGTACCTCTTGGTTTAC GAGTACTTGCCTAATGGTAGCCTGGATAAATATATATTTTGGGATGAAAAGTCAGGCACGCAGGAAGAAACACTGAGCTGGGGAAGAAGGCTGAGTGTGA TTTCAGGAGTGGCGCAGGCATTGGATTATCTGCATAATGGATGTATGAACAGGGTACTTCACCGAGACATAAAGGCCAGTAACGTAATGTTGGATTTAGA TTTCAATGCAAAACTCGGAGATTTCGGCTTGGCTCGCACCATTATTCATAATGAACAAACTCACCACTCAACAAAAGAGCTTGCAGGAACACCTGGCTAC ATGGCTCCGGAGAGTATTCTTACAGGAAGGGCAACGGCCGAAACAGATGTTTATGCTTTTGGTGTTCTTGTTCTGGAAGTTGCTTGTGGAAGGAAGCCTG GAGGGCAGGCTGAGCGGGATGACTACATTTGTAACATTGTGCATGGGCTATGGGAACTTTACAGGAGGGGAACAATCCTCGAAGGTGCAGACCCCAGATT GAATGGAATATTCATAAAGGAAGAGATGGAGTGTGTGCTTATTCTGGGGTTGGCCTGCTGCCATCCAAACCCAAAAAATAGGCCCTCCATGAAAACTGTT TTGCAGGTTCTTACAGGGGAAGCGCCACCACCAGAAGTGCCAGCTGAAAGACCTGCTTTTATGTGGCCACCCATGCCTCCATCCTTCAATGAATGGGACA ACTCTCTTGTTGGCGGCCAACTCTCTCCGTTTTCAGGACTCTCAGGGAGATGA
AA sequence Show only first row Show all	>Potri.006G193000.1 pacid=42769884 polypeptide=Potri.006G193000.1.p locus=Potri.006G193000 ID=Potri.006G193000.1.v4.1 annot-version=v4.1 MRFPLAATSAILAVFLALAQEQSLAFEFPNFTIQDQPQLILSDNSSIALGAIQVTADTRGASIENRAGRTLYGRPFRLWSKKGKKANFNTTFVLNVKSMT ASSGEGLAFILTGDPDVPGGSDGQWLGIVNSRLNGTTEAKTVAIEFDTKKSFPEDLDDNHIGLDINSVYSKRSVSLNDRGIYISAGTDIKVVVQYDGKNL IVFVGDDMKNPVLSEPLDLSAYLPEMVYVGFSGSTSNNTQLNCVRSWEFNHSEVKDSKLRWVWILVAVGSVLILLIGIGIAFFLYRKRGYEGNRVENTCP NIEEAILGFSTAPKKFKFKELSKATGKFNPKNKLGKGGFGTVYKGILGKKEVAVKRVSKKSTQGKQEFIAEVTTIGHIHHRNLVKLIGWCHEKREYLLVY EYLPNGSLDKYIFWDEKSGTQEETLSWGRRLSVISGVAQALDYLHNGCMNRVLHRDIKASNVMLDLDFNAKLGDFGLARTIIHNEQTHHSTKELAGTPGY MAPESILTGRATAETDVYAFGVLVLEVACGRKPGGQAERDDYICNIVHGLWELYRRGTILEGADPRLNGIFIKEEMECVLILGLACCHPNPKNRPSMKTV LQVLTGEAPPPEVPAERPAFMWPPMPPSFNEWDNSLVGGQLSPFSGLSGR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G06740			Concanavalin A-like lectin pro...		Potri.006G193000 [exp]	0	1
AT2G26560		PLP2, PLAIIA, P...	PATATIN-LIKE PROTEIN 2, phosph...		Potri.017G134101 [exp]	2.82	0.9675
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Potri.003G098900 [exp]	3.16	0.9560
AT2G32210			unknown protein		Potri.001G439800 [exp]	3.16	0.9666
AT4G14640		CAM8, AtCML8	calmodulin-like 8, calmodulin ...		Potri.005G052800 [exp]	4.89	0.9592	ACCAL.4
AT1G19020			unknown protein		Potri.012G075800 [exp]	7.74	0.9479
AT5G37490			ARM repeat superfamily protein...		Potri.010G103100 [exp]	8.36	0.8912
AT1G31130			unknown protein		Potri.002G074200 [exp]	8.36	0.9518
AT2G42360			RING/U-box superfamily protein...		Potri.019G091400 [exp]	8.83	0.9529
AT5G12340			unknown protein		Potri.001G276400 [exp]	9.00	0.9579
AT2G26560		PLP2, PLAIIA, P...	PATATIN-LIKE PROTEIN 2, phosph...		Potri.017G134001 [exp]	9.21	0.9596

Compare expression of checked genes

Potri.006G193000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.