Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G42040 91 / 9e-21 unknown protein AT5G53660 44 / 7e-05 GRF ATGRF7 growth-regulating factor 7 (.1) AT2G36400 44 / 0.0001 GRF ATGRF3 growth-regulating factor 3 (.1) AT3G52910 43 / 0.0003 GRF ATGRF4 growth-regulating factor 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G058100 [exp] 475 / 2e-169 AT2G42040 91 / 7e-21 unknown protein Potri.016G058000 [exp] 276 / 3e-91 AT2G42040 92 / 2e-21 unknown protein Potri.006G193500 [exp] 266 / 4e-87 AT2G42040 82 / 1e-17 unknown protein Potri.016G059400 [exp] 55 / 2e-08 AT2G42040 50 / 7e-07 unknown protein Potri.006G115200 [exp] 44 / 9e-05 AT3G52910 244 / 3e-77 growth-regulating factor 4 (.1) Potri.012G022600 [exp] 43 / 0.0002 AT5G53660 137 / 1e-35 growth-regulating factor 7 (.1) Potri.005G026950 [exp] 42 / 0.0002 AT1G09060 167 / 4e-48 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1.2.3) Potri.013G019000 [exp] 43 / 0.0003 AT1G09060 996 / 0.0 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1.2.3) Potri.014G012800 [exp] 42 / 0.0005 AT2G22840 303 / 1e-95 growth-regulating factor 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021062 [exp] 79 / 5e-17 AT2G42040 80 / 6e-18 unknown protein Lus10004164 [exp] 78 / 2e-16 AT2G42040 80 / 5e-18 unknown protein Lus10020352 [exp] 44 / 0.0001 AT3G13960 167 / 2e-48 growth-regulating factor 5 (.1) Lus10009533 [exp] 44 / 0.0001 AT3G13960 162 / 7e-45 growth-regulating factor 5 (.1) Lus10011558 [exp] 42 / 0.0008 AT2G22840 268 / 2e-83 growth-regulating factor 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08879 [poplar] [flax] WRC WRC
Representative CDS sequence Show only first row Show all	>Potri.006G193300.1 pacid=42768556 polypeptide=Potri.006G193300.1.p locus=Potri.006G193300 ID=Potri.006G193300.1.v4.1 annot-version=v4.1 ATGAGGATTAGAAATAGAAAGGTTCCTTTGCCTCTTTCCTCTCTATCACCGATACCTCTCTCAGATCCCCAGCTTAGCCGGTCTCCGGTGGTGCAACTTC AATTACACAACATCCCACATCAAAATCTCTTTCAAGAACCTCAAAAGGATGAATACTTCGATCTTCAGCTGCCTTCTAATCAGCTAAATCAACCGATCGG AGGTGGAAGCAAAGGTCATGATGATTGCTCCCATGATGCTGGACCACAAGAAGAGAACAAGGTTTTGTTGCAAGAGGGTGATGAGATTAAGGGAGGAGAA GTAGGAGAGAAGAGTAATGATGCCAGGAAGGGAAGTTTCTTGAGCGAAGGAGTGCACGTCACAGTTCTTCAACAATCTTGTTCTTCCCATCAAGGAGTTG GGAGATGGGGTGAGGGAGACAGGGCATTTCCATTAAAGAAGAGAAGAGGGAGCTTTGAAAGGAGATCGAATGAGGAAACGATAATGGATACAAGTAAGAA AATGAAAACCAAAATGAAGACAAAGATGGAAAAGAAATGTTTGCAACAGAATGGTGATACTGAAGAAGATGACAAGGAAACAAAAGAAGGTGCTAGTTCC AAAGTAAAAACGAAGGCTAGGGGTGGTGCACTATTGGAGGGATCACGGTGCAGTCGTGTTAATGGAAGAGGATGGAGGTGTTGCCAGCAAACCCTTGTGG GATACTCTCTTTGCGAACATCATTTGGGTAAAGGAAGGCTAAGAAGTATGAATAGTGTTCGAAGCCGATCTATTGCTACAACTGTACCAAAGAAGGACGA GTATGGGGCATTATCGAGCCCTTCATTATTATTGTCGCTGAAGAAAGAAGAGACTAAGGGGGATTCTTTGGATGATAAAGTTAGTGGTACTGCATATAAT GAAGATGATAAGGAGAAGCCATTAATGATCTCAAGGAGGAAGATGAAGTTTGGTATGGTAAAAGCTCGATCAATAAGCAGCTTGTTGGGCCAAGCAAACA ATGCAATTGGAGTGGCTGAGGATAACGAGTAG
AA sequence Show only first row Show all	>Potri.006G193300.1 pacid=42768556 polypeptide=Potri.006G193300.1.p locus=Potri.006G193300 ID=Potri.006G193300.1.v4.1 annot-version=v4.1 MRIRNRKVPLPLSSLSPIPLSDPQLSRSPVVQLQLHNIPHQNLFQEPQKDEYFDLQLPSNQLNQPIGGGSKGHDDCSHDAGPQEENKVLLQEGDEIKGGE VGEKSNDARKGSFLSEGVHVTVLQQSCSSHQGVGRWGEGDRAFPLKKRRGSFERRSNEETIMDTSKKMKTKMKTKMEKKCLQQNGDTEEDDKETKEGASS KVKTKARGGALLEGSRCSRVNGRGWRCCQQTLVGYSLCEHHLGKGRLRSMNSVRSRSIATTVPKKDEYGALSSPSLLLSLKKEETKGDSLDDKVSGTAYN EDDKEKPLMISRRKMKFGMVKARSISSLLGQANNAIGVAEDNE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G42040			unknown protein		Potri.006G193300 [exp]	0	1
AT2G43540			unknown protein		Potri.007G134400 [exp]	11.31	0.8752
AT5G35690			unknown protein		Potri.014G160400 [exp]	14.89	0.8494
AT2G14910			unknown protein		Potri.001G298200 [exp]	27.00	0.8551
					Potri.006G028500 [exp]	28.46	0.8736
AT2G32170			S-adenosyl-L-methionine-depend...		Potri.016G021900 [exp]	28.72	0.8675
AT4G14910		HISN5B, IGPD	HISTIDINE BIOSYNTHESIS 5B (.1....		Potri.010G087600 [exp]	29.03	0.8759
AT5G65250			unknown protein		Potri.005G073500 [exp]	30.98	0.8752
AT2G32170			S-adenosyl-L-methionine-depend...		Potri.016G021400 [exp]	37.74	0.8612
AT4G14570		AtAARE, AARE	acylamino acid-releasing enzym...		Potri.008G160400 [exp]	39.24	0.8606
AT4G37020			unknown protein		Potri.007G043200 [exp]	41.70	0.8470

Compare expression of checked genes

Potri.006G193300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.