Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G58030 377 / 9e-128 RING/U-box superfamily protein (.1.2.3.4) AT2G42030 295 / 5e-96 RING/U-box superfamily protein (.1) AT2G44410 128 / 8e-33 RING/U-box superfamily protein (.1) AT1G19310 117 / 2e-30 RING/U-box superfamily protein (.1) AT1G74990 107 / 1e-27 RING/U-box superfamily protein (.1) AT2G23780 108 / 3e-27 RING/U-box superfamily protein (.1) AT4G27470 106 / 4e-26 ATRMA3 RING membrane-anchor 3 (.1) AT4G03510 98 / 3e-23 ATRMA1, RMA1 RING membrane-anchor 1 (.1.2) AT4G28270 91 / 4e-21 ATRMA2 RING membrane-anchor 2 (.1) AT3G26730 53 / 4e-07 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G058300 [exp] 729 / 0 AT3G58030 331 / 7e-110 RING/U-box superfamily protein (.1.2.3.4) Potri.009G023300 [exp] 169 / 4e-47 AT2G44410 192 / 3e-56 RING/U-box superfamily protein (.1) Potri.001G229600 [exp] 167 / 1e-46 AT2G44410 191 / 6e-56 RING/U-box superfamily protein (.1) Potri.007G031600 [exp] 121 / 9e-32 AT2G23780 227 / 4e-75 RING/U-box superfamily protein (.1) Potri.002G133000 [exp] 118 / 1e-30 AT1G19310 244 / 5e-82 RING/U-box superfamily protein (.1) Potri.014G040400 [exp] 117 / 4e-30 AT1G19310 226 / 4e-75 RING/U-box superfamily protein (.1) Potri.005G127900 [exp] 116 / 7e-30 AT2G23780 234 / 3e-78 RING/U-box superfamily protein (.1) Potri.001G401600 [exp] 105 / 1e-25 AT4G27470 205 / 5e-66 RING membrane-anchor 3 (.1) Potri.004G042700 [exp] 103 / 2e-25 AT4G03510 157 / 1e-47 RING membrane-anchor 1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021063 [exp] 457 / 2e-159 AT3G58030 362 / 1e-122 RING/U-box superfamily protein (.1.2.3.4) Lus10004162 [exp] 443 / 6e-154 AT3G58030 367 / 3e-124 RING/U-box superfamily protein (.1.2.3.4) Lus10029292 [exp] 441 / 8e-153 AT3G58030 374 / 6e-127 RING/U-box superfamily protein (.1.2.3.4) Lus10016255 [exp] 433 / 9e-150 AT3G58030 362 / 2e-122 RING/U-box superfamily protein (.1.2.3.4) Lus10010791 [exp] 120 / 3e-31 AT1G19310 266 / 1e-90 RING/U-box superfamily protein (.1) Lus10016303 [exp] 120 / 3e-31 AT1G19310 268 / 2e-91 RING/U-box superfamily protein (.1) Lus10016796 [exp] 113 / 1e-28 AT2G23780 242 / 3e-81 RING/U-box superfamily protein (.1) Lus10022492 [exp] 108 / 3e-27 AT2G23780 241 / 1e-80 RING/U-box superfamily protein (.1) Lus10011184 [exp] 102 / 1e-24 AT4G03510 164 / 5e-50 RING membrane-anchor 1 (.1.2) Lus10018489 [exp] 102 / 1e-24 AT4G03510 159 / 7e-48 RING membrane-anchor 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF13923 [poplar] [flax] zf-C3HC4_2 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Potri.006G193600.1 pacid=42767644 polypeptide=Potri.006G193600.1.p locus=Potri.006G193600 ID=Potri.006G193600.1.v4.1 annot-version=v4.1 ATGGGTGAGGCGACATCTGATACTATGAATCTTGATTTGAATCTCGGTCCTGGTCCTGAGGCTGGGTCAGAATTAGAAGCATCTAATGAAGCCATGAATT TAGATGATTGGGTTGATGACCCTATTATGAGAATTAGGGAAGCTGTTAGAATTGGGGCTCGAGAGGCTCGAGAGCATAGGAGATGGAGACAATTTCAAGT TCCACAACAAACTCAAAGCCTTTCGGTGGAATTGAATCAACTGATGGCTAATTCTGGCCATGTGGGCACATTACAGGCTGGTGAGGGAAGTGTTGCTGCT GAAGAAAGAACAAATGAAGTGCCTAAAATGTGCGAAAATAACAATGGATTTTTGGAAGATGAGGTGTCACAGAAAAAAGATGATGTTGAGAAGGCCAGTG GTAATGACGGGAGCTTCTATGATTGCAATATTTGTTTGGATTTGGCTACAGACCCTGTTGTTACATGCTGTGGTCACCTGTTTTGTTGGCCATGCCTCTA CCAATGGTTGCATGTGCATTCCGATGCAAAAGAATGCCCAGTCTGCAAGGGAGAGGTGACCATGAAGAATGTGACCCCGATTTATGGCCGTGGTTGTACC ACCCGTGAGCCCGAGGAGGATACAAATCTGGAGATCCCTGTTAGGCCTCATGCACGGCGGGTTGAGAGTTTGAGACAAACTGCTTCAAGGCATCTTTCCA GCTTCCCAGTAGAGGAGATGATTAGACGACTTGGAAGAAGATTTGATTTACCCCGGGACTTATCTCCTCCACAGGATTCAAATGGTTCTCGTGGAGCTGC TGATAGGACCCAATCCATTCTGAATAGGATTATGACATACAGGGGAATGCGTGCTGAGCAAAATCCTATTGCACCTCCTGATGAGATGGTGGATTTAACT CAGACCAGACCAACAAGCCCTGTGGGAGGGTATACCCGTCGGCTTCATGACATAGTGGATTTAATACATTCTGGGACAGCCGGCACAGAGACAGGACCAG CTCGTCGGGCAAATGGGCTCCTACTTCGAAGATCTCAAGCACAATCTCTAAGATCTTCAACCCACACTGCATTTTCTTCTGCTTTGAATTCAACTGAAAG GATAGCTGAAACATATTTTCGAAACCATCCTACAGGGAGGAATCAGGAGCAGCCCCAACCTGTTGACGATAGAGATTCTTTCTCAAGCATTGCTGCAGTT ATAAACTCAGGGAGTCAAATGGACACTGCCGTGGATTCTATGGTCTCCCTTTCAACTTCTTCTTCCAGGAGAAGAAATGATGCTTCGAGAATCTCTGATG TGGACAGTGGGGATTCTCGTGCACCTAGGAGGCGGCGATTGAACTAG
AA sequence Show only first row Show all	>Potri.006G193600.1 pacid=42767644 polypeptide=Potri.006G193600.1.p locus=Potri.006G193600 ID=Potri.006G193600.1.v4.1 annot-version=v4.1 MGEATSDTMNLDLNLGPGPEAGSELEASNEAMNLDDWVDDPIMRIREAVRIGAREAREHRRWRQFQVPQQTQSLSVELNQLMANSGHVGTLQAGEGSVAA EERTNEVPKMCENNNGFLEDEVSQKKDDVEKASGNDGSFYDCNICLDLATDPVVTCCGHLFCWPCLYQWLHVHSDAKECPVCKGEVTMKNVTPIYGRGCT TREPEEDTNLEIPVRPHARRVESLRQTASRHLSSFPVEEMIRRLGRRFDLPRDLSPPQDSNGSRGAADRTQSILNRIMTYRGMRAEQNPIAPPDEMVDLT QTRPTSPVGGYTRRLHDIVDLIHSGTAGTETGPARRANGLLLRRSQAQSLRSSTHTAFSSALNSTERIAETYFRNHPTGRNQEQPQPVDDRDSFSSIAAV INSGSQMDTAVDSMVSLSTSSSRRRNDASRISDVDSGDSRAPRRRRLN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G58030			RING/U-box superfamily protein...		Potri.006G193600 [exp]	0	1
AT5G59050			unknown protein		Potri.009G038600 [exp]	1.00	0.9229
AT5G14170		CHC1	SWIB/MDM2 domain superfamily p...		Potri.001G331400 [exp]	1.41	0.9206	CHC901
AT4G27540		PRA1.H	prenylated RAB acceptor 1.H (....		Potri.011G116200 [exp]	3.46	0.9185
AT3G16350	MYB		Homeodomain-like superfamily p...		Potri.003G049100 [exp]	6.48	0.9100
AT1G11050			Protein kinase superfamily pro...		Potri.017G133000 [exp]	9.16	0.9126
AT5G08535			D111/G-patch domain-containing...		Potri.008G003100 [exp]	9.59	0.8765
AT1G80360			Pyridoxal phosphate (PLP)-depe...		Potri.001G177000 [exp]	10.19	0.8848
AT1G07230		NPC1	non-specific phospholipase C1 ...		Potri.009G045100 [exp]	10.58	0.9074
AT2G31670			Stress responsive alpha-beta b...		Potri.001G413500 [exp]	10.95	0.9045
AT3G47940			DNAJ heat shock family protein...		Potri.015G066100 [exp]	11.40	0.8958

Compare expression of checked genes

Potri.006G193600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.