Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G30090 604 / 0 Galactose oxidase/kelch repeat superfamily protein (.1) AT2G24540 258 / 6e-83 AFR ATTENUATED FAR-RED RESPONSE, Galactose oxidase/kelch repeat superfamily protein (.1) AT1G55270 154 / 3e-42 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G67480 127 / 6e-33 Galactose oxidase/kelch repeat superfamily protein (.1.2) AT1G22040 127 / 3e-32 Galactose oxidase/kelch repeat superfamily protein (.1) AT5G60570 100 / 3e-23 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G27420 96 / 8e-22 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G16250 96 / 2e-21 Galactose oxidase/kelch repeat superfamily protein (.1) AT2G44130 94 / 6e-21 Galactose oxidase/kelch repeat superfamily protein (.1) AT3G61350 91 / 3e-20 SKIP4 SKP1 interacting partner 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G007100 [exp] 288 / 1e-94 AT2G24540 408 / 4e-142 ATTENUATED FAR-RED RESPONSE, Galactose oxidase/kelch repeat superfamily protein (.1) Potri.001G008000 [exp] 167 / 3e-47 AT1G55270 731 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.003G217700 [exp] 160 / 7e-45 AT1G55270 733 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.002G091900 [exp] 135 / 2e-35 AT1G22040 595 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.005G170000 [exp] 130 / 2e-33 AT1G22040 592 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.008G176000 [exp] 118 / 8e-30 AT1G67480 487 / 3e-173 Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.010G059200 [exp] 118 / 1e-29 AT1G67480 480 / 2e-170 Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.014G083200 [exp] 114 / 3e-28 AT3G61350 299 / 7e-100 SKP1 interacting partner 4 (.1) Potri.010G004500 [exp] 112 / 1e-27 AT1G16250 551 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028121 [exp] 674 / 0 AT1G30090 583 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10042824 [exp] 669 / 0 AT1G30090 578 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10019425 [exp] 161 / 5e-45 AT1G55270 652 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10001071 [exp] 154 / 3e-42 AT1G55270 655 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10017821 [exp] 116 / 1e-28 AT3G61350 328 / 3e-110 SKP1 interacting partner 4 (.1) Lus10002112 [exp] 114 / 5e-28 AT1G16250 525 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10025357 [exp] 115 / 7e-28 AT1G22040 497 / 6e-174 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10020960 [exp] 113 / 2e-27 AT1G22040 499 / 7e-175 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10013899 [exp] 109 / 7e-26 AT1G16250 523 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10037413 [exp] 99 / 7e-23 AT5G60570 589 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [poplar] [flax] F-box PF00646 [poplar] [flax] F-box F-box domain CL0186 [poplar] [flax] Beta_propeller PF01344 [poplar] [flax] Kelch_1 Kelch motif
Representative CDS sequence Show only first row Show all	>Potri.006G193800.5 pacid=42767094 polypeptide=Potri.006G193800.5.p locus=Potri.006G193800 ID=Potri.006G193800.5.v4.1 annot-version=v4.1 ATGCAAAGAGTTCGATTATCGTCTCAACAGGCACCGGTACATAAACTAGGGGACTCCCAGATTACATTATCCCCCAAATTTAGAGTGGGTGTGATCCAAT CTTCCTTGTTAAACCCTTCACCAGAGTTTGAGTCATCTCTGCAATGTGAGCCCCTTATTCCTGGGCTTCCTGATGATATTGCACTCAATTGTCTTCTCCG GGTTCCAGTCCAGAGCCATGCAGCCTGCAAAGCTGTTTGTAAGAGATGGCATTTATTGCTTGGTAATAAGGAGCGGTTCTTCACCCGTAGAAAGGAATTG GGGTTCAAGGATCCTTGGCTCTTTGTCTTTTCTTTCCACAAGTGCACTGGAAAGATCCAGTGGCAGGTTTTAGACCTTATCAACTTTTCTTGGCACACTA TCCCAGCAATGCCTTGTAAACACAAGGTCTGCCCTCATGGATTTAGATGTGTTTCAGTAGCTCATGATGGTACACTCTTTGTTTGTGGTGGTATGGTCTC TGATGTTGATTTTCCCCTTGACTTGGTTTTGAAGTATGAGATGCAAAAGAATCGTTGGACTGTGATGAATCGGATGATAACAGCTAGATCATTTTTTGCT AGCGGGGTAATTGAAGGGATGATATATGTAGCAGGAGGCAACAGCTCTGACCTTTTTGAGCTAGACTCAGCGGAGGTTTTGGATCCTGTAAAAGGGAATT GGCGTAGAATTGCAAACATGGGAACAAACATGGCATCTTATGATGCAGCAGTTCTTGACGGGAAACTTCTTGTGACAGAAGGGTGGTTGTGGCCATTCTT TTTCTCTCCCAGGGGTCAAATTTATGATCCAAGGACTGATAAATGGGAGAATATGGCTTTTGGATTGAGAGAAGGTTGGACTGGTTCCAGTGTGGTGGTC TACGGGCGCTTGTTTGTGGTTTCAGACCTTGAACGGATGAAGCTCAAGGTTTATGATGCAGAAAGTGATTCTTGGGAAACAATAGAAGGGTCTCCCTTAC CAGAACAAATTTCTAAACCATTTGCTGTCAATGCTTGGGATTGCAAAATCTATGTTGTGGGTAGGAATCTTCATGTTGTTGTGGGTCATATCTCTAGGCT GCAGCAAAAGGGCATTTGTGAGAAGAAATGGGGCTTCAGTGTTAGATGGCATGTGGTGGATCCGCCAGATAGTTTCTGTGACTTGACACCTTCAAGCTCT CAGGTTCTTTTTGCATAG
AA sequence Show only first row Show all	>Potri.006G193800.5 pacid=42767094 polypeptide=Potri.006G193800.5.p locus=Potri.006G193800 ID=Potri.006G193800.5.v4.1 annot-version=v4.1 MQRVRLSSQQAPVHKLGDSQITLSPKFRVGVIQSSLLNPSPEFESSLQCEPLIPGLPDDIALNCLLRVPVQSHAACKAVCKRWHLLLGNKERFFTRRKEL GFKDPWLFVFSFHKCTGKIQWQVLDLINFSWHTIPAMPCKHKVCPHGFRCVSVAHDGTLFVCGGMVSDVDFPLDLVLKYEMQKNRWTVMNRMITARSFFA SGVIEGMIYVAGGNSSDLFELDSAEVLDPVKGNWRRIANMGTNMASYDAAVLDGKLLVTEGWLWPFFFSPRGQIYDPRTDKWENMAFGLREGWTGSSVVV YGRLFVVSDLERMKLKVYDAESDSWETIEGSPLPEQISKPFAVNAWDCKIYVVGRNLHVVVGHISRLQQKGICEKKWGFSVRWHVVDPPDSFCDLTPSSS QVLFA

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G30090			Galactose oxidase/kelch repeat...		Potri.006G193800 [exp]	0	1
AT1G07530	GRAS	SCL14, ATGRAS2	GRAS \(GAI, RGA, SCR\) 2, ARAB...		Potri.009G032700 [exp]	6.63	0.8521
AT1G28380		NSL1	necrotic spotted lesions 1, MA...		Potri.004G047700 [exp]	9.00	0.8754
AT5G46410		SSP4	SCP1-like small phosphatase 4 ...		Potri.001G353700 [exp]	9.38	0.8682
AT3G58970		MRS2-4, MGT6	magnesium transporter 6 (.1)		Potri.006G081700 [exp]	13.26	0.8461
AT1G34300			lectin protein kinase family p...		Potri.013G115700 [exp]	16.15	0.8602
AT3G17700		ATCNGC20, CNBT1	CYCLIC NUCLEOTIDE-GATED CHANNE...		Potri.012G038700 [exp]	20.61	0.8518	Pt-ATCNGC19.3
AT3G01400			ARM repeat superfamily protein...		Potri.014G016400 [exp]	20.97	0.8220
AT1G34750			Protein phosphatase 2C family ...		Potri.002G097200 [exp]	22.20	0.8291
AT1G65430		ATARI8, ARI8	ARABIDOPSIS ARIADNE 8, ARIADNE...		Potri.002G131300 [exp]	22.64	0.8417
AT1G73730	EIL	AtEIL3, ATSLIM,...	ARABIDOPSIS THALIANA SULFUR LI...		Potri.001G015900 [exp]	23.36	0.8467	Pt-EIL3.2

Compare expression of checked genes

Potri.006G193800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.