Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06700 686 / 0 TBR TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1) AT3G12060 600 / 0 TBL1 TRICHOME BIREFRINGENCE-LIKE 1, Plant protein of unknown function (DUF828) (.1) AT1G60790 462 / 7e-157 TBL2 TRICHOME BIREFRINGENCE-LIKE 2, Plant protein of unknown function (DUF828) (.1) AT5G49340 434 / 4e-147 TBL4 TRICHOME BIREFRINGENCE-LIKE 4 (.1) AT5G20590 403 / 1e-134 TBL5 TRICHOME BIREFRINGENCE-LIKE 5 (.1) AT3G62390 374 / 2e-123 TBL6 TRICHOME BIREFRINGENCE-LIKE 6 (.1) AT3G06080 318 / 4e-102 TBL10 TRICHOME BIREFRINGENCE-LIKE 10, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) AT5G19160 316 / 3e-101 TBL11 TRICHOME BIREFRINGENCE-LIKE 11 (.1) AT1G29050 286 / 6e-91 TBL38 TRICHOME BIREFRINGENCE-LIKE 38 (.1) AT5G06230 284 / 5e-90 TBL9 TRICHOME BIREFRINGENCE-LIKE 9 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G059300 [exp] 1015 / 0 AT5G06700 654 / 0.0 TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1) Potri.001G010900 [exp] 521 / 1e-179 AT5G06700 472 / 5e-161 TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1) Potri.010G043300 [exp] 470 / 9e-160 AT1G60790 604 / 0.0 TRICHOME BIREFRINGENCE-LIKE 2, Plant protein of unknown function (DUF828) (.1) Potri.008G108500 [exp] 452 / 3e-154 AT5G49340 460 / 7e-160 TRICHOME BIREFRINGENCE-LIKE 4 (.1) Potri.T171301 [exp] 452 / 7e-154 AT5G49340 461 / 2e-160 TRICHOME BIREFRINGENCE-LIKE 4 (.1) Potri.006G071500 [exp] 417 / 5e-140 AT5G20590 633 / 0.0 TRICHOME BIREFRINGENCE-LIKE 5 (.1) Potri.018G133000 [exp] 405 / 3e-135 AT5G20590 606 / 0.0 TRICHOME BIREFRINGENCE-LIKE 5 (.1) Potri.002G195800 [exp] 392 / 1e-129 AT3G62390 593 / 0.0 TRICHOME BIREFRINGENCE-LIKE 6 (.1) Potri.002G054400 [exp] 323 / 8e-104 AT3G06080 560 / 0.0 TRICHOME BIREFRINGENCE-LIKE 10, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021066 [exp] 735 / 0 AT5G06700 671 / 0.0 TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1) Lus10004159 [exp] 577 / 0 AT5G06700 552 / 0.0 TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1) Lus10013035 [exp] 459 / 1e-155 AT1G60790 595 / 0.0 TRICHOME BIREFRINGENCE-LIKE 2, Plant protein of unknown function (DUF828) (.1) Lus10029126 [exp] 419 / 2e-140 AT1G60790 527 / 0.0 TRICHOME BIREFRINGENCE-LIKE 2, Plant protein of unknown function (DUF828) (.1) Lus10011932 [exp] 410 / 1e-137 AT5G20590 543 / 0.0 TRICHOME BIREFRINGENCE-LIKE 5 (.1) Lus10027637 [exp] 405 / 8e-136 AT5G20590 540 / 0.0 TRICHOME BIREFRINGENCE-LIKE 5 (.1) Lus10037726 [exp] 395 / 1e-131 AT5G49340 435 / 3e-150 TRICHOME BIREFRINGENCE-LIKE 4 (.1) Lus10002430 [exp] 369 / 3e-121 AT3G62390 531 / 0.0 TRICHOME BIREFRINGENCE-LIKE 6 (.1) Lus10030900 [exp] 310 / 6e-102 AT1G60790 371 / 2e-127 TRICHOME BIREFRINGENCE-LIKE 2, Plant protein of unknown function (DUF828) (.1) Lus10034041 [exp] 313 / 3e-100 AT5G19160 605 / 0.0 TRICHOME BIREFRINGENCE-LIKE 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [poplar] [flax] SGNH_hydrolase PF13839 [poplar] [flax] PC-Esterase GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p CL0264 [poplar] [flax] PF14416 [poplar] [flax] PMR5N PMR5 N terminal Domain
Representative CDS sequence Show only first row Show all	>Potri.006G193900.1 pacid=42767433 polypeptide=Potri.006G193900.1.p locus=Potri.006G193900 ID=Potri.006G193900.1.v4.1 annot-version=v4.1 ATGGCTGACACAACAGCCAGCAAACACCTCTCTTCCATCAGTGGAGGTAACATCATTACAGATATGAAGAACCTATCTTCTCTCCTTAAAACAAGGAGAA CTGTGACTTTCGCTTATGGCTTCATGTTTGCTTTTGTTGCTTTCACTATCTTCTTGGCATTCAGTCCTTCTCCAAACTCATCCTCTCCCTGGTTTACTAA TATTTTTAGTACCAGCACTAGTACTGCTTCTTCTGATTCTCATAGATCTCAATTTTCTTCGATTTTCTCTTACTTCTTGCCCAACAACACATCAGCAGCC ACCTCACAAGAGCAAGGCCGTGGTTTCTCTTCAATGCCATCACAAAACACTACTAGATCTAATGACACCTTATCACCGAATTCTAGAACAGAAGTTAAAG ACCCAATAAGTGTAAAAAACCTCACTCAAAGCACAGTTTTGCAACCAAATCGGACCTCTAATTCTTCAGTTGTCATTAAAGAGCCAGCCTTTGCAAATAA TCAAACTCAAACTGCAGTGAATTCTGATAAAGGTCAAGTTTTAAAGCCAAATCAAACCACAGTTGCTAACCCAACTACAATCCAGGTAGCAGCAAATCAA AGTGAAAACACACCCACGAAGTCAGGTTCTTTGGTAAAGGAAGGTTCTGGAAATCAAGATAAAGGTGATGCAGGTAAGACTGTGTCATCAAATTTTACAG GTGATGCCGGTAAGACCGTATCATCAAATTTTACTGCTTCACTTGTGAAGAAACAAAGTAATGCGACAAAACAGAGCAATGAAACTAATTCAGGGAAGGA AGTGAAGCAGGGATTTGATAATCGGGTGCAGAATTTGGCAAATTGCGATTTTTTTGATGGAGAATGGGTCAAAGATGATTCGTATCCGCTTTACAAACCC GGGTCTTGTTCATTGATTGATGAGCAGTTTAATTGTATAATTAATGGTAGGCCTGATAAAGACTACCAGAAATATAAATGGAAGCCTAAAGGATGCACTT TACCAAGGTTGAATCCTCGTCATATGTTGGATATGTTGAGAGGAAAGCGACTTGTTTTCGTTGGCGATTCCCTGAACAGGAATATGTGGGAGTCTCTGGT TTGTATTCTAAAAGGATCAGTGAAAGATCAAAGCAAGGTTTTTGAAGTGAATGGAAGACATCATTTTCGAGGGGAAGCTTCATACTCATTTTTATTCAAA GATTATAACTGCACAATTGATTTCTTTGTATCGCCTTTCTTAGTTCAAGAATGGGAAATGCACGAAAAAGATGGATCGATGAAGGAGACACTTAGGCTTG ATTTAGTTGGGAGGTCTTCCAGTCAATATAAAAGTGCAGATATTATTGTCTTCAATACTGGACACTGGTGGACTCATGACAAAACTTCCAAAGGGAAAGA TTATTACCAAGAAGGGAATCATGTGTATAATGAGTTGAATGTTCTAGAGGCCTTTCGAAAAGCTTTGACAACATGGGCCAGATGGGTTGATGCAAATGTA GATCCAATGAAATCTCTGGTCTTCTTCAGAGGATATTCTGCTTCCCATTTCAGCGGTGGACAGTGGAATTCTGGTGGGCAATGTGACAGTGAGGCTGAAC CCATAAAAAACGTCACATACCTAAGGCAGTATCCACCGAAGATGCTGGTTCTTGAGAAAGTGTTGAGAAACATGAAAGCACATGTCACATACCTAAATGT TACACAAATGACTGATTATCGGAAGGATGGGCACCCTTCAGTCTATAGGAAGCAAAACCTGTCTCCGGAGGAAAGGAAATCACCGTTACATTTCCAAGAC TGCAGCCATTGGTGTCTTCCCGGTGTGCCGGATGCGTGGAATGAGATTCTCTATGCTAATCTTCTAGTCAATGAAAAACAGAAGCAGCAAGCGCAGAAGA GGCATAGGTAA
AA sequence Show only first row Show all	>Potri.006G193900.1 pacid=42767433 polypeptide=Potri.006G193900.1.p locus=Potri.006G193900 ID=Potri.006G193900.1.v4.1 annot-version=v4.1 MADTTASKHLSSISGGNIITDMKNLSSLLKTRRTVTFAYGFMFAFVAFTIFLAFSPSPNSSSPWFTNIFSTSTSTASSDSHRSQFSSIFSYFLPNNTSAA TSQEQGRGFSSMPSQNTTRSNDTLSPNSRTEVKDPISVKNLTQSTVLQPNRTSNSSVVIKEPAFANNQTQTAVNSDKGQVLKPNQTTVANPTTIQVAANQ SENTPTKSGSLVKEGSGNQDKGDAGKTVSSNFTGDAGKTVSSNFTASLVKKQSNATKQSNETNSGKEVKQGFDNRVQNLANCDFFDGEWVKDDSYPLYKP GSCSLIDEQFNCIINGRPDKDYQKYKWKPKGCTLPRLNPRHMLDMLRGKRLVFVGDSLNRNMWESLVCILKGSVKDQSKVFEVNGRHHFRGEASYSFLFK DYNCTIDFFVSPFLVQEWEMHEKDGSMKETLRLDLVGRSSSQYKSADIIVFNTGHWWTHDKTSKGKDYYQEGNHVYNELNVLEAFRKALTTWARWVDANV DPMKSLVFFRGYSASHFSGGQWNSGGQCDSEAEPIKNVTYLRQYPPKMLVLEKVLRNMKAHVTYLNVTQMTDYRKDGHPSVYRKQNLSPEERKSPLHFQD CSHWCLPGVPDAWNEILYANLLVNEKQKQQAQKRHR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G06700		TBR	TRICHOME BIREFRINGENCE, Plant ...		Potri.006G193900 [exp]	0	1
AT3G06150			unknown protein		Potri.008G202400 [exp]	4.12	0.7866
AT1G68400			leucine-rich repeat transmembr...		Potri.006G228400 [exp]	6.16	0.8295
AT2G04280			unknown protein		Potri.014G170200 [exp]	11.48	0.8032
AT5G44670			Domain of unknown function (DU...		Potri.001G074600 [exp]	12.00	0.7376
AT2G26870		NPC2	non-specific phospholipase C2 ...		Potri.001G275500 [exp]	13.26	0.7930
AT5G45280			Pectinacetylesterase family pr...		Potri.003G046200 [exp]	15.49	0.7919
AT3G49220			Plant invertase/pectin methyle...		Potri.015G013700 [exp]	19.07	0.7668	PME2.12
					Potri.010G001200 [exp]	22.04	0.7655
AT3G23730		XTH16	xyloglucan endotransglucosylas...		Potri.014G146100 [exp]	31.41	0.7387	Pt-XTR7.1
AT4G28320		MAN5, AtMAN5	endo-beta-mannase 5, Glycosyl ...		Potri.006G009400 [exp]	32.17	0.7691

Compare expression of checked genes

Potri.006G193900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.