Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06680 1200 / 0 ATSPC98, SPC98, ATGCP3 ARABIDOPSIS THALIANA GAMMA TUBULIN COMPLEX PROTEIN 3, spindle pole body component 98 (.1) AT5G17410 114 / 7e-26 Spc97 / Spc98 family of spindle pole body (SBP) component (.1), Spc97 / Spc98 family of spindle pole body (SBP) component (.2) AT3G53760 96 / 6e-20 ATGCP4 GAMMA-TUBULIN COMPLEX PROTEIN 4 (.1) AT3G43610 74 / 4e-13 Spc97 / Spc98 family of spindle pole body (SBP) component (.1) AT1G37010 47 / 2e-06 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G059900 [exp] 1445 / 0 AT5G06680 1301 / 0.0 ARABIDOPSIS THALIANA GAMMA TUBULIN COMPLEX PROTEIN 3, spindle pole body component 98 (.1) Potri.010G180700 [exp] 126 / 8e-30 AT5G17410 994 / 0.0 Spc97 / Spc98 family of spindle pole body (SBP) component (.1), Spc97 / Spc98 family of spindle pole body (SBP) component (.2) Potri.014G128400 [exp] 97 / 1e-20 AT3G53760 1076 / 0.0 GAMMA-TUBULIN COMPLEX PROTEIN 4 (.1) Potri.009G153300 [exp] 62 / 2e-09 AT3G43610 855 / 0.0 Spc97 / Spc98 family of spindle pole body (SBP) component (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016246 [exp] 1232 / 0 AT5G06680 1262 / 0.0 ARABIDOPSIS THALIANA GAMMA TUBULIN COMPLEX PROTEIN 3, spindle pole body component 98 (.1) Lus10029296 [exp] 963 / 0 AT5G06680 998 / 0.0 ARABIDOPSIS THALIANA GAMMA TUBULIN COMPLEX PROTEIN 3, spindle pole body component 98 (.1) Lus10029297 [exp] 211 / 2e-63 AT5G06680 207 / 4e-63 ARABIDOPSIS THALIANA GAMMA TUBULIN COMPLEX PROTEIN 3, spindle pole body component 98 (.1) Lus10029779 [exp] 89 / 6e-18 AT3G53760 1049 / 0.0 GAMMA-TUBULIN COMPLEX PROTEIN 4 (.1) Lus10026855 [exp] 75 / 1e-13 AT5G17410 805 / 0.0 Spc97 / Spc98 family of spindle pole body (SBP) component (.1), Spc97 / Spc98 family of spindle pole body (SBP) component (.2) Lus10042807 [exp] 72 / 1e-12 AT3G53760 1013 / 0.0 GAMMA-TUBULIN COMPLEX PROTEIN 4 (.1) Lus10020228 [exp] 60 / 2e-09 AT5G17410 382 / 3e-129 Spc97 / Spc98 family of spindle pole body (SBP) component (.1), Spc97 / Spc98 family of spindle pole body (SBP) component (.2) Lus10018892 [exp] 47 / 8e-05 AT1G80260 919 / 0.0 embryo defective 1427, Spc97 / Spc98 family of spindle pole body (SBP) component (.1) Lus10028588 [exp] 46 / 0.0002 AT1G80260 942 / 0.0 embryo defective 1427, Spc97 / Spc98 family of spindle pole body (SBP) component (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0540 [poplar] [flax] GCP PF04130 [poplar] [flax] GCP_C_terminal Gamma tubulin complex component C-terminal
Representative CDS sequence Show only first row Show all	>Potri.006G194200.2 pacid=42770506 polypeptide=Potri.006G194200.2.p locus=Potri.006G194200 ID=Potri.006G194200.2.v4.1 annot-version=v4.1 ATGGAAGAAGAAGAAGACGACCAACAAAACATCCTAGATCTGGTCAAAGAATTAGTCAATCGCTTACTCTCTCAAAACCCTCAAAACCCTAGACCCCCAA TTTCTAACCCTAACCCTAACTCTCCTGATTTCCAAAATTCTCTTCGCTACGCAATCCGCATTCTCTCCAGCAGATTAACCCCATCGATTGCCCCTGATGC CGCCGCAATTGCTGAATCAATCAAGCGTGGTCTTGCCACTCAAGGTAAATCCTCCCAAGCTCTCACTCTCGCTGAGTTATACAACAAATTTGCATCGAAA ACGGGACCGGGAAGTATTAATAACAAATGGGCAGTTCTTTATTTGCTTAAAATCATTTCCGAAGATACAAAAATTGCACAAAATGCTCCAAATTCCACGC TTTTGTTACCTAATTTGGGGTTAAATGAGCTTGATTTGAGCAATGAATCGCGGATTTCCCGTGATTTTAAGAGAAGGGAAAAGGGTTATGATAATGGGGT TTTGTTGGTTAGTAAAGATCCGGAGAATTTGCTTGAAATCGCATTTAGAGAGTTCGTTAATCTGGTGAAAGAGGAAAATGAGGTGTCCGAAGAAGTTTTA GTGAGAGATGTGTTATATGTTTGTCAAGGGATTGATGGGCAATATGTGAAGTTTGATGAAAATGTTGATGGGTATGTTTTATCAGATTCAATCAAGGTTC CAAGAGGTACAAGGGTTATGGTTAGGAAGTTGTGTGAGTTGGGGTGGTTGTTTAGGAAAGTTAAAGGGTATATTTCAGAGAGTATGGATCGGTTTCCAGC TGAAGATGTGGGAACTGTAGGGCAGGCATTTTGTGCTGCGTTACAGGACGAGCTTTCAGATTATTATAAGTTGTTGGCTGTGCTTGAAGCGCAGGCAATG AATCCAATTCCGTTGGTTTCAAAGTCAACTAGTTCGAGTAATTATTTGTCATTGAGGAGGTTGTCAGTTTGGTTTGCTGAGCCAACAGTGAAAATGAGGT TAATGGCTGTTTTGGTTGATAAATGCAGAGTCTTGAGGGGTGGGGCAATGGCTGGGGCTATACATTTGCATGCCCAGCATGGCGATCCATTGGTGCATGA GTTCATGAGGAGTTTACTGCAGCATGTTTGTTCGCCACTTTTTGAAATGGTTAGGAGTTGGGTTTTGGAAGGGGAGTTGGAGGATATTTTTGCTGAGTTC TTTGTTGTGGGTCAACCAGTGAAAGCTGAATCACTTTGGAGAGAAGGTTACAGGCTCCATGCTGGAATGCTTCCTTCATTCATTTCACAACCCCTTGCTC AGCGCATTTTAAGGACTGGGAAGTCAATAAATTTCCTTCGTGTCTGTTGTGATGATCGTGGTTGGGCTGATACTGCAACAGAGGCTGCTGCTGCTGCTGG GACCACAACTAGAAGAGGGAGTCTTGGATATGGTGAAACTGATGCGCTTGAAACTCTGGTTGTTGAAGCAGCAAAGAGAATTGACAAGCATCTGTTGGAT GTTATCTACACGAGGTATAAATTCAAAGAACACTGCCTTGCAATCAAGCGATATTTACTGCTGGGGCAAGGTGATTTTGTCCAGTACTTAATGGATATTG TTGGGCAGGAACTTTCTGAGCCTGCTAATACAATTAGTTCATTCCAGTTGGCAGGGTTGCTGGAAAGTGCAATTCGATCATCCAATGCTCAGTATGATGA TCCTGACATATTAGATAGGTTGAGGGTGAAGATGTTGCCGCATGGTACTGGAGATAGAGGTTGGGATGTATTCTCGTTGGAATATGATGCCAGAGTACCA TTAGACACAGTGTTTACAGAATCTGTTATGGCAAGGTATTTAAGAATTTTTAATTTCCTGTGGAAGCTGAGGCGAGTGGAGCATGCACTTATTGGTGCGT GGAAGACAATGAAACCTAATTGTATTACTTCTCATTCTTTCACCAAGCTGCAGGATGCAGTTAAGTTGCAGTTACTCTCAACACTGAGACAATGCCAGGT CCTTTGGAATCAGATGAATCATTTTGTTACAAACTTGCAATATTATATCATGTTTGAAGTTCTGGAGGTTTCATGGTCTAACTTCTCAAATGAAATGGAA GTGGCAAAGGATCTTGATGATCTACTTGCAGCACATGATAAGTACCTCCACTCAATTGTAGAGAAATCTCTTCTTGGTGAACGATCTCAATCCCTTTACA AGTCACTATTTGTCTTGTTTGACCTTATACTGCATTTCAGAAGTCATGCAGATCGATTGTGTGAAGGAATTTACGAGTTACAAGCAAGAACCAGGGCATC CTCTTTATCCTCTCAAGACAAGACAAAATCACGAAGGCATACAAGAGATAATCCGTCAGAGCCTGGATCATGGTTTAGTGATGGCAGGAAGGCCCTAGAA CAACGTGCTGGTGAATTTCTTCAAAATATGGGGCGGGAACTGGAAGAAATATCAAAGGAATATACAGTGTTGCTCGAAGGTTTCTTGTCTCAGTTGCCTG TGCAACAACATGTTGATTTGAAATTCCTCTTCTTTCGGCTTGACTTCACTGAATTTTATAGTAGGTTCCGTCCTGGCACATAG
AA sequence Show only first row Show all	>Potri.006G194200.2 pacid=42770506 polypeptide=Potri.006G194200.2.p locus=Potri.006G194200 ID=Potri.006G194200.2.v4.1 annot-version=v4.1 MEEEEDDQQNILDLVKELVNRLLSQNPQNPRPPISNPNPNSPDFQNSLRYAIRILSSRLTPSIAPDAAAIAESIKRGLATQGKSSQALTLAELYNKFASK TGPGSINNKWAVLYLLKIISEDTKIAQNAPNSTLLLPNLGLNELDLSNESRISRDFKRREKGYDNGVLLVSKDPENLLEIAFREFVNLVKEENEVSEEVL VRDVLYVCQGIDGQYVKFDENVDGYVLSDSIKVPRGTRVMVRKLCELGWLFRKVKGYISESMDRFPAEDVGTVGQAFCAALQDELSDYYKLLAVLEAQAM NPIPLVSKSTSSSNYLSLRRLSVWFAEPTVKMRLMAVLVDKCRVLRGGAMAGAIHLHAQHGDPLVHEFMRSLLQHVCSPLFEMVRSWVLEGELEDIFAEF FVVGQPVKAESLWREGYRLHAGMLPSFISQPLAQRILRTGKSINFLRVCCDDRGWADTATEAAAAAGTTTRRGSLGYGETDALETLVVEAAKRIDKHLLD VIYTRYKFKEHCLAIKRYLLLGQGDFVQYLMDIVGQELSEPANTISSFQLAGLLESAIRSSNAQYDDPDILDRLRVKMLPHGTGDRGWDVFSLEYDARVP LDTVFTESVMARYLRIFNFLWKLRRVEHALIGAWKTMKPNCITSHSFTKLQDAVKLQLLSTLRQCQVLWNQMNHFVTNLQYYIMFEVLEVSWSNFSNEME VAKDLDDLLAAHDKYLHSIVEKSLLGERSQSLYKSLFVLFDLILHFRSHADRLCEGIYELQARTRASSLSSQDKTKSRRHTRDNPSEPGSWFSDGRKALE QRAGEFLQNMGRELEEISKEYTVLLEGFLSQLPVQQHVDLKFLFFRLDFTEFYSRFRPGT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G06680		ATSPC98, SPC98,...	ARABIDOPSIS THALIANA GAMMA TUB...		Potri.006G194200 [exp]	0	1
AT4G17260			Lactate/malate dehydrogenase f...		Potri.001G122400 [exp]	8.48	0.6077
AT2G06925		ATSPLA2-ALPHA, ...	PHOSPHOLIPASE A2-ALPHA, Phosph...		Potri.006G070400 [exp]	8.94	0.5976
AT3G46540			ENTH/VHS family protein (.1)		Potri.009G030500 [exp]	10.72	0.6153
AT3G47670			Plant invertase/pectin methyle...		Potri.003G123500 [exp]	20.85	0.5529
AT3G03050		RHD7, ATCSLD3, ...	ROOT HAIR DEFECTIVE 7, KOJAK, ...		Potri.003G097100 [exp]	38.53	0.5675
AT2G25810		TIP4;1	tonoplast intrinsic protein 4;...		Potri.006G239700 [exp]	43.26	0.5336	TIP4.1
AT5G40250			RING/U-box superfamily protein...		Potri.017G072300 [exp]	44.89	0.5444
AT5G40740			unknown protein		Potri.001G337700 [exp]	49.24	0.5357
AT4G39350		ATH-A, CESA2, A...	cellulose synthase A2 (.1)		Potri.002G066600 [exp]	49.82	0.5613
AT1G12560		ATHEXPALPHA1.26...	expansin A7 (.1)		Potri.001G112900 [exp]	60.00	0.4995

Compare expression of checked genes

Potri.006G194200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.