Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G58050 1083 / 0 unknown protein AT2G41960 751 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G060200 [exp] 2032 / 0 AT3G58050 1131 / 0.0 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021073 [exp] 1182 / 0 AT3G58050 984 / 0.0 unknown protein Lus10016244 [exp] 1012 / 0 AT3G58050 851 / 0.0 unknown protein Lus10029299 [exp] 964 / 0 AT3G58050 820 / 0.0 unknown protein Lus10017239 [exp] 796 / 0 AT3G58050 768 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.006G194500.1 pacid=42768854 polypeptide=Potri.006G194500.1.p locus=Potri.006G194500 ID=Potri.006G194500.1.v4.1 annot-version=v4.1 ATGCCAGGATTAACACAGAGAAATGATCAATTTAGTAATGCAACATCACCCGGAGGCTCTTACTCAATTTCTGCTAATTCGTTCTGGTCTAAACACCGTG ATGATGTTAGCTTCAATCAGCTCCAGAAGTTCTGGAGTGAGCTGCCACCACAAGCTCGACAGAAGCTACTGAGGATAGACAAGCAAGCCCTGTTTGAGCA AGCTCGTAAGAACATGTACTGTTCTAGATGCAATGGGCTATTGCTTGAAGGTTTTATGCAGATTGTCATGTATGGTAAGTCTTTGCAGCAGGAAGGAGGT GCTGGGCACCTTCGTTGCGATATACTGGAAGCCTCAAAAAATCTAAATGATTGTGGATCACATGTAACAAATGGGTGCCAAGATGAAATTCAAGATCCAT CTGTCTATCCTTGGGGTGGTCTAACGACCACACGTGATGGATCGTTAACGCTTTTGAAGTGCTACTTGTTCTCAAAGTCTCTGAAGGGACTCCAAAATGT ATTTGACAGTGCACGTGCAAGGGAGCGGGAAAGGGAATTGCTCTATCCTGATGCCTGTGGTGGGGGAGGTCGGGGTTGGATCAGCCAAGGAATGGCAAGT TATGGTAGAGGACATGGAACAAGAGAGACGTGTGCACTGCATACTGCCAGGCTTTCTTGTGACACATTAATGGATTTCTGGTCAGCACTTGGAGAAGAAA CCCGGCAGTCTCTTTTAAGGATGAAGGAAGAGGATTTCATAGAGAGGCTCATGTGCAGGTTTGACAGCAAGAGATTTTGTAGAGATTGTAGAAGGAATGT TATTCGTGAATTTAAGGAGCTAAAGGAGCTGAAACGCATGCGACGAGAACCTCGCTGCACTAGTTGGTTTTGTGTTGCAGATACTGCCTTTCACTATGAG GTGTCTGATGATTCTGTCCAAGCTGATTGGAACCAGACTTTTTCGGACACTGTTGGATCATACCATCACTTTGAATGGGCAGTTGGCACAGGAGAAGGAA AATCTGACATTCTAGAATTTGAAAATGTTGGCATGAATGGAAGTGCTCAAGTCACTGGTCTAGATCTTGGTGGTTTGACTGCATGTTTTATTACCCTTAG GGCTTGGAAAGCTGATGGCCGCTGCACTGAGCTTTCTGTAAAAGCTCATGCACTAAAGGGTCAACAATGTGTGCACTGCAGGCTTGTAGTAGGTGATGGT TTTGTTACAATTACTAGAGGGGAAAGTATCAGAAGTTTTTTTGAGCATGCTGAAGAGACCGAGGAAGAAGAGGATGATGATTCCATGGATAAGGACGGAA ACGAATTTGATGGAGAATGCTCCCGGCCCCAAAAGCATGCGAAGAGTCCTGAACTTGCTCGAGAGTTTCTTCTAGATGCTGCAACAGTTATTTTTAAGGA AAAGGTTGAAAAGGCTTTCAGAGAAGGAACTGCTCGCCAAAATGCACACAGCATCTTTGTTTGTCTTGCACTAAAACTACTGGAAGATCGGGTCCATGTT GCATGCAAAGAAATCATTACATTGGAAAAGCAGATGAAGCTTCTTGAAGAAGAGGAAAAGGAAAAGCGTGAAGAAGAAGAGCGCAAGGAGAGAAGAAGAA CAAAAGAAAGAGAGAAAAAGCTTCGAAAGAAGGAGAGGTTAAAAGGGAAAGAAAGGGATAAAGAGAAGAAATGTCCTGAATCAAATGATATTACCATGCT TCCTGATCTCTTAAAGGATGGATCATCACCAAGTGTTGATGAAGAACTGAACACCATCTGCTGTAGGGATTCACTAAGTGAAACAGGCAATATTTCTCTG TCCAGGCCTGGATCTTCTGACATTCAAGATGAACAGTTTTCATATGGATTTGAGACCTGTATAATGGAAAAAGATTCATATGATAGTCCTGATGGGAAGG TTGCAAATTTGAAAGAAGGGACTGGCTCTTTTTCAACTGAACAAGCAAAATATTCTCGCCGAAGATTGAAATTGCGGAAAGAAGTTCAACTTGATTCTTT TTTGAAGTGGCCTGATAGACGCCGATTTGCAGTTATTTCAGAAAGTGGGGCGGTGGTTAATAGATCAGAGTTAAGACATCACAGTGATGATTGTGACACT CCTTCTAGGCCTGTTAATGGATTGTATAGGCAGTCAAGGATCAATGGTCCAAAGTCCAATGGTCGAAATTGTGGCCTCAAGTTTAGTGAAAACTTTCATT GTCCCCACAACAGGATGAATGATAGATATGACTTCCATTCTTGCAGCTGCCACCAGAACATTGAATGCAGGGTAAAGGTTGAACCACATGTTTCATCATT AAGAGTGGACCGAGAGAGCAAATCTGTTGGCAAGTCAGAAACAGTGATGGATATGTCGAAGCAGTTCTATCGTGGTAACAAATATAGTCCAGTAGATCAC ATCCGTGAAGTTTGTGGAAGAATCAAAAGCAAATCCAACATGGGAAACAATCCTAAGAAAGTTTGGGAGCCCGTAGAATCACGAAAGAAGTATTCTTGGA GCAGCTCAGACTCTGATGTCATCATGAGCTCTTCTACCAAGGTTGAAGCTGTGGATCTGGATAGTAAACTCTTAAAGTCATCTGGTGAGACATGTTCCAG TGAAGTTACTGGAAATTCCATTGAAATTGATCATGATGAGAATAACATGAACGAATCAAGGGACTGTAGCCTTGAAACTGTTGAAGACTGCCAGGGTGGA TACCATGAGGAAGTGAATGGTTGCTGCTCAACAGAAACTGGTTATGAGGAAATCATTTCATGTCCTGAAAAAAATTTCGCATCGTCTGAGACTTCTGATC CTAGCATTGGAAGCACTTTGAGTTCTGATAACTGTTCATCTTGCCTTAGTGAGGGAGATAGCAATACAGTTTCTTCAAACAATGGACATCTCGAATCGTC TTCCACTTCAGATTCAGAAGATGCCTGTCAACAATCAGAAGGAAGAGAAACTTCAACATGCAGTGGAAATGCTTTCTCCAATTGTAATGAAGTGGGGCTG GACAAGAGACCGAGTACAAATGGAGCTGAGGTGTTTGGAAGCAGGGAACCTTTTGTGCTTCAACCAGATGGTCAAAGAATGAACATTTTGGTAAATCCGC CGACAACAACTGTCCAAGATCCTGAAAATGGAATACCTGCTGTCAGTATGGGTTTGCAACATCAAGTTGTGTTTCCACCTTTGCATAACCATAACTTACA GTTTCCAATGTTTCAAGCTCCTTCAACAATGGGCTACTACCATCAAACTCCAGTCTCTTGGCCGGCAGCTCCAGCCAATGGATTAATGCCCTTCCCCCAT CCTAACCATTATCTATATGCTGGTCCTCTTGGCTATGATTTAAATGGAAACTCCCGCATTTGTATGCAATATGGTTCAGTGCCGCATTTGGCAACTCCTG TGTTTAATTCTGGTCCAGTTCCGGTGTATCAGCAGGGAGAATACTTGAACTCAGAGGTTCGAACAGAGACACGTATGATGCAGGAAAATTTTACTGAAGC TAATAAGGAGAGGATGGTTCCAGCCAGATCACATTCAAACGAAGCACCACCAAGTGGAGAAGGTGGGAAAGTTGATAATTCTGCCAAATTGCACAACAGT AATACTGGAGTTGATAATTCTGCCAAATTGCACAACAGTAATACTGGATTTTCCTTGTTCCATTTTGGTGGACCTGTCGCTCTCTCAACAGGATGTAAGT CAGATCCTGTACCTTCAAAAGATGGAATTGCTGGAGATTTATCTTCAAAAGTCTCGGCAGATGAAAATGATCCAGCGTGCAATAAGGAGACTGCTATGGA AGAATACAACTTGTTTGCAGCAAGTAATGGCATAAGGTTTTCATTCTTCTAA
AA sequence Show only first row Show all	>Potri.006G194500.1 pacid=42768854 polypeptide=Potri.006G194500.1.p locus=Potri.006G194500 ID=Potri.006G194500.1.v4.1 annot-version=v4.1 MPGLTQRNDQFSNATSPGGSYSISANSFWSKHRDDVSFNQLQKFWSELPPQARQKLLRIDKQALFEQARKNMYCSRCNGLLLEGFMQIVMYGKSLQQEGG AGHLRCDILEASKNLNDCGSHVTNGCQDEIQDPSVYPWGGLTTTRDGSLTLLKCYLFSKSLKGLQNVFDSARARERERELLYPDACGGGGRGWISQGMAS YGRGHGTRETCALHTARLSCDTLMDFWSALGEETRQSLLRMKEEDFIERLMCRFDSKRFCRDCRRNVIREFKELKELKRMRREPRCTSWFCVADTAFHYE VSDDSVQADWNQTFSDTVGSYHHFEWAVGTGEGKSDILEFENVGMNGSAQVTGLDLGGLTACFITLRAWKADGRCTELSVKAHALKGQQCVHCRLVVGDG FVTITRGESIRSFFEHAEETEEEEDDDSMDKDGNEFDGECSRPQKHAKSPELAREFLLDAATVIFKEKVEKAFREGTARQNAHSIFVCLALKLLEDRVHV ACKEIITLEKQMKLLEEEEKEKREEEERKERRRTKEREKKLRKKERLKGKERDKEKKCPESNDITMLPDLLKDGSSPSVDEELNTICCRDSLSETGNISL SRPGSSDIQDEQFSYGFETCIMEKDSYDSPDGKVANLKEGTGSFSTEQAKYSRRRLKLRKEVQLDSFLKWPDRRRFAVISESGAVVNRSELRHHSDDCDT PSRPVNGLYRQSRINGPKSNGRNCGLKFSENFHCPHNRMNDRYDFHSCSCHQNIECRVKVEPHVSSLRVDRESKSVGKSETVMDMSKQFYRGNKYSPVDH IREVCGRIKSKSNMGNNPKKVWEPVESRKKYSWSSSDSDVIMSSSTKVEAVDLDSKLLKSSGETCSSEVTGNSIEIDHDENNMNESRDCSLETVEDCQGG YHEEVNGCCSTETGYEEIISCPEKNFASSETSDPSIGSTLSSDNCSSCLSEGDSNTVSSNNGHLESSSTSDSEDACQQSEGRETSTCSGNAFSNCNEVGL DKRPSTNGAEVFGSREPFVLQPDGQRMNILVNPPTTTVQDPENGIPAVSMGLQHQVVFPPLHNHNLQFPMFQAPSTMGYYHQTPVSWPAAPANGLMPFPH PNHYLYAGPLGYDLNGNSRICMQYGSVPHLATPVFNSGPVPVYQQGEYLNSEVRTETRMMQENFTEANKERMVPARSHSNEAPPSGEGGKVDNSAKLHNS NTGVDNSAKLHNSNTGFSLFHFGGPVALSTGCKSDPVPSKDGIAGDLSSKVSADENDPACNKETAMEEYNLFAASNGIRFSFF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G58050			unknown protein		Potri.006G194500 [exp]	0	1
AT3G58050			unknown protein		Potri.016G060200 [exp]	1.73	0.8100
AT3G58110			unknown protein		Potri.019G091700 [exp]	3.00	0.8446
AT2G32910			DCD (Development and Cell Deat...		Potri.013G029200 [exp]	4.12	0.7631
AT4G12780			Chaperone DnaJ-domain superfam...		Potri.002G217200 [exp]	12.64	0.7664
AT5G08450			unknown protein		Potri.018G145542 [exp]	14.07	0.8396
AT1G59820		ALA3	aminophospholipid ATPase 3 (.1...		Potri.010G039900 [exp]	23.23	0.7064	ALA3.3
AT1G74250			DNAJ heat shock N-terminal dom...		Potri.009G018400 [exp]	25.37	0.8027
AT4G14920			Acyl-CoA N-acyltransferase wit...		Potri.008G152600 [exp]	26.68	0.7952
AT2G03150		EMB1579	embryo defective 1579, ATP/GTP...		Potri.010G166100 [exp]	27.11	0.8059
AT2G25730			unknown protein		Potri.006G244900 [exp]	30.16	0.7781

Compare expression of checked genes

Potri.006G194500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.