Plant FIBer expression Database

Potri.006G194600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G41950 276 / 4e-93 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10029301
[exp]
273 / 4e-92 AT2G41950 230 / 2e-75 unknown protein
Lus10016243
[exp]
251 / 2e-83 AT2G41950 211 / 6e-68 unknown protein
PFAM info
Representative CDS sequence
>Potri.006G194600.1 pacid=42769454 polypeptide=Potri.006G194600.1.p locus=Potri.006G194600 ID=Potri.006G194600.1.v4.1 annot-version=v4.1
ATGAATTCTATCTTATTACCTTCCTCTCCTGTCCTTCAACTTCCTTTCCCCCAGTTCTCACTCTGTCGTCAATTACAGCCTCTATATATTTCAAAATCCA
GGGGCAATCGTTGTGCTAGCCAGAACTCTTCTCTTCCCCATTCATTTCAACCCAATTCAAAATTTTCCTTTCACAGTCATCAACCATTAATTGCCACCGC
AGTCCCTTCAGATGAGGGACCTGTATCTGTAATCAACTTTGAAGATTTTATTGAAAAGGACTGGTCATTTCTTGACTCAGAGGAGTCAAATTCTAAAGAA
CATGACCAAAATATTGGCCGGATTATTTCTGCTGGAAGGATTGAGGAGACTTCAAGGGTGTTAGTTTCACTTGGTTCAGAAGGATTTGTGGATAGGTTGG
TTGATACATCGCCCTGCAGTCTTTTGCTTATTGTCCATGACTCACTTTTTCTGTTAGCTTGTGTTAAAGAAAAGTACGACAAGGTTAAATGTTGGCAAGG
AGAACTGATTCATGTTTCAGAAAAGTGGGCACCTTTGGATGTTGTGTTCCTTTACTTTCTGCCAGCTTTACCCTTTAAACTGGATGAGGTTCTTGGGTCA
CTTGCTAAACGTTTCTCACCAGGTGCGAGATTGGTTATTAGCCATCCCCAGGGAAGGGAAGTCTTAGAGCAGCAAAAGAAACAATATCAAGATGTTGTAA
CTTCAGATTTGCCTGATAAAATGACTTTGCAGAAGGCTGCAGCTAACCATTCTTTTGAAATGGTTGAATATGTGGACGAGCCAGGATTCTATCTTACTGT
CTTACGGTTATCTGATGCAAGAAACTGA
AA sequence
>Potri.006G194600.1 pacid=42769454 polypeptide=Potri.006G194600.1.p locus=Potri.006G194600 ID=Potri.006G194600.1.v4.1 annot-version=v4.1
MNSILLPSSPVLQLPFPQFSLCRQLQPLYISKSRGNRCASQNSSLPHSFQPNSKFSFHSHQPLIATAVPSDEGPVSVINFEDFIEKDWSFLDSEESNSKE
HDQNIGRIISAGRIEETSRVLVSLGSEGFVDRLVDTSPCSLLLIVHDSLFLLACVKEKYDKVKCWQGELIHVSEKWAPLDVVFLYFLPALPFKLDEVLGS
LAKRFSPGARLVISHPQGREVLEQQKKQYQDVVTSDLPDKMTLQKAAANHSFEMVEYVDEPGFYLTVLRLSDARN

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G41950 unknown protein Potri.006G194600
[exp]
0 1
AT1G12410 EMB3146, CLP2, ... NUCLEAR-ENCODED CLP PROTEASE P... Potri.001G115900
[exp]
2.44 0.9727 CLPR2.1
AT4G09650 PDE332, ATPD PIGMENT DEFECTIVE 332, ATP syn... Potri.014G102100
[exp]
3.16 0.9739
AT3G20230 Ribosomal L18p/L5e family prot... Potri.013G108700
[exp]
8.00 0.9703
AT3G23400 FIB4 fibrillin 4, Plastid-lipid ass... Potri.008G169100
[exp]
10.24 0.9711
AT5G55710 AtTic20-V translocon at the inner envelo... Potri.004G191700
[exp]
11.48 0.9594
AT4G14870 SECE1 secE/sec61-gamma protein trans... Potri.008G153400
[exp]
12.64 0.9619
AT2G27290 Protein of unknown function (D... Potri.009G161800
[exp]
14.14 0.9598
AT5G36120 atylmg3, CCB3 "cofactor assembly, complex C ... Potri.002G062100
[exp]
15.81 0.9670
AT3G19810 Protein of unknown function (D... Potri.010G170100
[exp]
16.91 0.9614
AT5G55570 unknown protein Potri.011G085501
[exp]
18.81 0.9652

Potri.006G194600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.