Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12020 1278 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT5G06670 1209 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G21730 840 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G39050 638 / 0 Kinesin motor family protein (.1) AT2G21380 631 / 0 Kinesin motor family protein (.1) AT3G10180 318 / 2e-91 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G59540 294 / 8e-86 ZCF125 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT1G18370 277 / 1e-78 HIK, ATNACK1 HINKEL, ARABIDOPSIS NPK1-ACTIVATING KINESIN 1, ATP binding microtubule motor family protein (.1) AT4G24170 274 / 2e-77 ATP binding microtubule motor family protein (.1) AT3G51150 273 / 6e-77 ATP binding microtubule motor family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G060400 [exp] 1793 / 0 AT3G12020 1281 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.002G081300 [exp] 944 / 0 AT1G21730 1063 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.009G122100 [exp] 811 / 0 AT4G39050 1379 / 0.0 Kinesin motor family protein (.1) Potri.004G161100 [exp] 643 / 0 AT4G39050 1411 / 0.0 Kinesin motor family protein (.1) Potri.006G040700 [exp] 325 / 1e-93 AT3G10180 1336 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.014G013300 [exp] 289 / 1e-83 AT1G59540 885 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.006G136600 [exp] 289 / 4e-83 AT3G43210 1250 / 0.0 TETRASPORE, ARABIDOPSIS NPK1-ACTIVATING KINESIN 2, ATP binding microtubule motor family protein (.1) Potri.002G027600 [exp] 285 / 8e-82 AT2G21300 722 / 0.0 ATP binding microtubule motor family protein (.1.2) Potri.012G054400 [exp] 281 / 5e-80 AT1G18370 1466 / 0.0 HINKEL, ARABIDOPSIS NPK1-ACTIVATING KINESIN 1, ATP binding microtubule motor family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016236 [exp] 1371 / 0 AT3G12020 1120 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10029307 [exp] 1364 / 0 AT3G12020 1120 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10018145 [exp] 909 / 0 AT1G21730 1033 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10025688 [exp] 908 / 0 AT1G21730 1042 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10017969 [exp] 804 / 0 AT4G39050 1517 / 0.0 Kinesin motor family protein (.1) Lus10041958 [exp] 693 / 0 AT4G39050 1202 / 0.0 Kinesin motor family protein (.1) Lus10017496 [exp] 602 / 0 AT4G39050 1235 / 0.0 Kinesin motor family protein (.1) Lus10028790 [exp] 565 / 0 AT4G39050 1242 / 0.0 Kinesin motor family protein (.1) Lus10010441 [exp] 330 / 3e-96 AT3G10180 1214 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10012103 [exp] 326 / 4e-94 AT3G10180 1271 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00225 [poplar] [flax] Kinesin Kinesin motor domain
Representative CDS sequence Show only first row Show all	>Potri.006G194900.6 pacid=42769903 polypeptide=Potri.006G194900.6.p locus=Potri.006G194900 ID=Potri.006G194900.6.v4.1 annot-version=v4.1 ATGGCGACGAAACAGGGATCAAAATCAAGAATATCAGGTTTAATAAGTAATTCAAAGAAACCAGCAGCGAATTCACAGTCATCATCAACGGCATCTTCTA CTAAGCAATTTTTAGAGAATTCAATGGACGGTCAAAGCTCACCTGCATCCTCGTCAGCTCGAAGCAAACCACAATATTTTTACTCCGAAAGTGTTAATCT AGATACTGAGAGATCCAAAGAAAATGTAACTGTCACTGTTCGCTTTCGGCCCCTAAGTCCTAGGGAAATCAGGCAAGGAGAGGAGATTGCGTGGTATGCG GATGGAGAAACTGTCGTGCGAAATGAACATAATCCATCTACTGCGTATGCGTATGATCGGGTGTTTGGTCCTACAACTACAACGCGCCATGTATATGATG TTGCTGCTCAGCATGTTGTCAATGGTGCTATGGAAGGGATCAATGGCACCATTTTCGCATATGGAGTGACTAGCAGCGGGAAAACCCATACCATGCATGG GGATCAAAGGTCACCTGGAATTATACCATTAGCAGTGAAGGATGCTTTTAGTATCATTCAAGAGACTCCAAACCGTGAGTTCCTCCTCCGTGTTTCATAC CTGGAGATCTATAATGAGGTTGTTAACGACTTGTTGAATCCAGCAGGACAAAATTTAAGAATCAGAGAAGATGCTCAGGGAACTTTTGTCGAGGGAATAA AAGAAGAAGTTGTATTATCCCCTGCTCATGCACTTTCCCTTATAGCAGCTGGGGAAGAGCACAGACATGTTGGGTCCACAAACTTTAATTTACTCAGCAG CAGGAGTCATACAATATTTACACTGACAGTAGAGAGTAGCCTGTATGGTGAAAATAGTGAAGGAGAGGCTGTAAATTTGTCCCAGCTGAGCCTCATCGAT CTGGCAGGTTCTGAAAGCTCAAAGGCTGAAACTACTGGCGTGAGACGGAAAGAAGGATCCTATATTAATAAAAGTTTGCTGACACTTGGAACTGTTATAT CGAAGTTGACGGATGGGAGAGCCGCTCATATTCCTTACAGGGACTCTAAATTGACAAGGCTACTTCAGTCTTCATTAAGTGGTCATGGGCGTGTATCACT CATTTGCACTGTCACTCCCTCATCTAGTAGTTCGGAAGAGACACACAATACTTTAAAATTTGCCCACCGTGCAAAGCACATTGAAATTCAAGCAGCACAG AACAAGATTATTGATGAGAAATCGCTTATCAAGAAGTACCAAAATGAGATACGCTCTTTAAAGGAAGAGTTAGAACAATTGAAAAGGGGTATTGTGACAA TTCCTCGATTGAAAGACATTGTAGAAGACGACATTGTCCTCCTCAAGCAGAAGCTAGAAGATGGTCAAGTGAAACTGCAATCAAGATTGGAACAAGAAGA AGAAGCTAAAGCAGCTCTATTGAGCAGAATACAGCGGCTGACAAAATTAATTTTGGTGTCAACAAAAGCTTCACAACCATCAAGGATCTCTCACCGCCCA GGTCCAAGGAGGAGGCATTCCTTTGGAGAAGAAGAGCTTGCATACCTACCGTACAAGAGGCAGGACTTGATATTGGATGACGAAAATATTGACTTGTATG TTTCTCTTGAAGGAAATACTGAAAGTGCGGATGAGACACTGAAAGAGGAGAAGAAAACCCGAAAGCATGGATTGCTGAACTGGTTAAAGCTACGGAAACG AGATAGTGGATTGGGAATGAGCACCAGTGACAAATCAAGTGGAGTTAAATCTAATAGTACACCTTCAACACCTCAAGCAGAAAACAGCAATTATTATGCA GAATCCAGACTTTCACATCCTTCACTTGCAGAAAGCTCTCCATCAGCTGATCTTCTATCTGAGGTCAGGCAGGATAGAGAGGTACCTGAGGACAATTTCC TTGAGCAGGAAACTCCTTTGAATGGCATAAAAACAAGTGATCAGATTGATCTTCTGAGGGAGCAGCAGAAAATTTTATCTGGAGAGGTGGCACTCCATTC AAGTATTTTGAAGCGATTGTCTGAGGAGGCTTCAAGGAATCCCCTGAAGGAACACATACAGTTGGAGATGAAGAAGTTGAGTGATGAAATCAAGGTGAAG AATGAACAAATAGCTTTGTTGGAAAAGCAAATTGCTGATTCCATCATGGCCTCTCACAACAGCTTGGCTAACTTGGAAGCATCGCAAACGATTGCTGAAC TGACAGCTCAATTGAATGAGAAGTCATTTGAACTCGAGGTTAAAGCGGCAGATAATTGTATAATTCAAGACCAGCTCAGCCAAAAGATCTGTGAATGTGA AGGATTGCAGGAAACAATTGTCTCTTTGAAGCAGCAGCTCTCAGATGCACTGGAGTCAAAAAATATTAGCCCTCTAGCTAGCTACTCTCAACGAATTTCT GAACTAAAAAGCTTTCATGCACAACATCACATGAACAAGGAAACTGCAGCATCAAAAGATAGAAATGAAGATTTGCTTCTACAAGCACAGGCCACTGAGA TGGAAGAACTGAAGCAAAAAGTTGATGCACTAACAGAATCAAAAGAGCAGTTAGAAACTCGGAACCAAAAATTGGCCGAGGAGAGTTCATACGCCAAAGG GCTAGCATCAGCTGCTGCTGTTGAGCTCAAGGCATTATCAGAAGAAGTGGCGAAGCTTATGAATCATAATGAGAGATTAACTGCCGAGCTGATAGCATTG AAGAACTCCCCCACTCAGCGTAGAAGTGGCAGTACTGTTCGAAATGGCCGGAGAGACAATCACATGAAACACCAAGACCAAGTTGGGGCAGCCTCAGAGC TCAAGAGAGAGTTGGCCGTGAGTCGAGAAAGAGAAGTTCAATATGAAGCTGCTCTTATGGAGAAGGATCAAAGAGAGACTGATCTTCAAAGGAAAGTTAA GGAATCCAAACAAAGAGAAGCTTATCTGGAAAATGAACTTGCTAACATGTGGGTTCTCGTTGCGAAGCTGAAGAAATCCCAAGGAGCTGAAATGGATGTC TCCGAGGCAACAGGACATGACGGTTTAGGAATCTGA
AA sequence Show only first row Show all	>Potri.006G194900.6 pacid=42769903 polypeptide=Potri.006G194900.6.p locus=Potri.006G194900 ID=Potri.006G194900.6.v4.1 annot-version=v4.1 MATKQGSKSRISGLISNSKKPAANSQSSSTASSTKQFLENSMDGQSSPASSSARSKPQYFYSESVNLDTERSKENVTVTVRFRPLSPREIRQGEEIAWYA DGETVVRNEHNPSTAYAYDRVFGPTTTTRHVYDVAAQHVVNGAMEGINGTIFAYGVTSSGKTHTMHGDQRSPGIIPLAVKDAFSIIQETPNREFLLRVSY LEIYNEVVNDLLNPAGQNLRIREDAQGTFVEGIKEEVVLSPAHALSLIAAGEEHRHVGSTNFNLLSSRSHTIFTLTVESSLYGENSEGEAVNLSQLSLID LAGSESSKAETTGVRRKEGSYINKSLLTLGTVISKLTDGRAAHIPYRDSKLTRLLQSSLSGHGRVSLICTVTPSSSSSEETHNTLKFAHRAKHIEIQAAQ NKIIDEKSLIKKYQNEIRSLKEELEQLKRGIVTIPRLKDIVEDDIVLLKQKLEDGQVKLQSRLEQEEEAKAALLSRIQRLTKLILVSTKASQPSRISHRP GPRRRHSFGEEELAYLPYKRQDLILDDENIDLYVSLEGNTESADETLKEEKKTRKHGLLNWLKLRKRDSGLGMSTSDKSSGVKSNSTPSTPQAENSNYYA ESRLSHPSLAESSPSADLLSEVRQDREVPEDNFLEQETPLNGIKTSDQIDLLREQQKILSGEVALHSSILKRLSEEASRNPLKEHIQLEMKKLSDEIKVK NEQIALLEKQIADSIMASHNSLANLEASQTIAELTAQLNEKSFELEVKAADNCIIQDQLSQKICECEGLQETIVSLKQQLSDALESKNISPLASYSQRIS ELKSFHAQHHMNKETAASKDRNEDLLLQAQATEMEELKQKVDALTESKEQLETRNQKLAEESSYAKGLASAAAVELKALSEEVAKLMNHNERLTAELIAL KNSPTQRRSGSTVRNGRRDNHMKHQDQVGAASELKRELAVSREREVQYEAALMEKDQRETDLQRKVKESKQREAYLENELANMWVLVAKLKKSQGAEMDV SEATGHDGLGI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G12020			P-loop containing nucleoside t...		Potri.006G194900 [exp]	0	1
AT4G22560			unknown protein		Potri.001G121600 [exp]	2.00	0.8877
AT4G04960			Concanavalin A-like lectin pro...		Potri.011G053200 [exp]	2.82	0.8621
AT4G04960			Concanavalin A-like lectin pro...		Potri.011G053100 [exp]	7.48	0.8253
AT2G41430		LSR1, CID1, ERD...	CTC-Interacting Domain 1, dehy...		Potri.016G041600 [exp]	10.24	0.8384	ERD15.2
AT4G27430		CIP7	COP1-interacting protein 7 (.1...		Potri.011G122900 [exp]	11.35	0.8473	Pt-CIP7.1
AT1G63260		TET10	tetraspanin10 (.1.2.3)		Potri.001G107200 [exp]	11.48	0.8450
AT2G46770	NAC	NST1, ANAC043, ...	NAC SECONDARY WALL THICKENING...		Potri.002G178700 [exp]	12.96	0.8296
AT5G47820		FRA1	FRAGILE FIBER 1, P-loop contai...		Potri.007G046700 [exp]	13.00	0.8274	Pt-KICP.1
AT2G18060	NAC	ANAC037, VND1	Arabidopsis NAC domain contain...		Potri.005G116800 [exp]	13.96	0.8221
AT5G17230		PSY	PHYTOENE SYNTHASE (.1.2.3)		Potri.003G218000 [exp]	14.42	0.8214

Compare expression of checked genes

Potri.006G194900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.