Plant FIBer expression Database

Potri.006G195000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G12010 811 / 0 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.016G060500
[exp]
1107 / 0 AT3G12010 806 / 0.0 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10017227
[exp]
916 / 0 AT3G12010 812 / 0.0 unknown protein
Lus10021085
[exp]
811 / 0 AT3G12010 722 / 0.0 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF07035 Mic1 Colon cancer-associated protein Mic1-like
Representative CDS sequence
>Potri.006G195000.10 pacid=42767480 polypeptide=Potri.006G195000.10.p locus=Potri.006G195000 ID=Potri.006G195000.10.v4.1 annot-version=v4.1
ATGTCTGGGAAAGCATCCATCTCGCAGCTTAGTGTTAGTTCAAGTGGGTCTGCTGGGTTGTCACATGTTTATATTCAGCACCCTCCTTTACGATGTAATG
TTCCAGGATCAAGGGGTTTATTTTATGATGATGGGAATAAGCTATTATGCTCCCCCACATCTGATCGGGTTTTTTCATGGAAAGTTGCTCCCTTTGATCC
TCTTGTTGCACCTACCTCTGATTTGATAAGTGAAGGTCCTATCCTATCTATTCGGTATTCTTTAGATGCGAAGATCATAGCAATCCAGAGAACCAGTCAA
GAGATCCAGTTTTTTCATAGGGAAACTGGACAAAACTTTTGTCACAAATGTAAGCCAGAGTCAGAGAGCATACTAGGGTTTTTTTGGACTGATTGTCCAC
GGTGCCATTTTGTACTAGTAAAGACCAGTGGGCTGGATTTGCTTGCCTGTGATGCTGAATCAAAATCATTTAAATTGGTAGAAACAAGGAAATCGAACGT
GAGCTGGTATGTATATACACATGAGAGTCGCTTGGTTCTTCTTGCTTCAGGAATGCAATGCAAGACCTTCAGTGGATTTCAGCTTTCATCTGCAGGGATT
GTTTGCTTGCCAAAGTTTGAGATGGTAATGGCAAAATCTGAGGCTAACAGCAAGCCTGTCCTAGCAGCTGAAGATGTCTATATTGCAACCATCTATGGGA
GGATATACTGCTTGCAAATTGATAGAGTTGCAATGCTACTTCACTCGTATAGGTTTTATCAAGATGCTGTTGTGCAGCAGGGTTCCTTGCCAATATATTC
AAGCAAAATTGCTGTTAGTGTGGTTGATAATGTACTTCTTATCCATCAAGTGGACACAAAGGTTGTTATACTCTATGACATATTTGTAGATTCTCGAGCA
CCCATTTCTGCTCCACTGCCTCTACTATTTAGGGGGTTCCCCAGGTCTAATGCTTCCTCCTCTCGATCTACCATAAAAGATGGTGAAAGTCCAGAGGCCA
ACATAAGTGATTCTGAATCAAACATTTATGGAGATGACTGGACATTTCTGATTCCTGACCTTACATGCAATGTTTCCAATAAGCAGTTATGGAAAATCCA
TTTAGACTTGGAGGCAATTTCTGCATGTAGCTCTGAAGTTCCATCAGTGCTTGAGTTCTTGCAACATAGGAGGTTGGAAGCTAGTAAGGCTAAGCAGCTG
TGCTTGGCAATTACACACAACCTTATCTTGGAAAGGAGTCCGGTCTTAATGGTTGCCAAGGCAATAGAAGTACTGATTGCGTCTTACTCCCAGTCACTCA
AAACAGGAAGTTATCTCAAAGGAATTAAAGACACTGAAGACAATGTCCAATTCAAATCAATAAAAACAAACCGAAAAGTGAACAAGGAGAAATTATCAGG
TGGTGCTGAGAGTTCTAGCACTGAAGTTCACACATCATCTTCACAATCTCAGCATCTTAGACCAACTAACAGCCCATTAAATGCTAGTGTTTCTGAAAGG
CAAGAGTCTGAAGTTACTTCTCCAGCAATTTCACCCGATGAGATGTATAGCCTTGTGTTTGCTCCAGTTGAGGAAGAGATGGTGGGAGACTCCTCTTACT
TCGTTGCCATCATTGTTGAGTTCCTTCGTAGTGCAAGTTCAGTAAAGAAAAAAGTTCAACCAAACATCTATGTGTTGGCAATACAACTTCTAGCACGCAA
TGAGCGATATGCAGAACTCTCACTGTTCATCATAAACAAGGTTCTTCAACCCTCAAAAGAAGTTGCAATGCAGCTCCTAGAAGCAGGCCGTCAAAATTCC
CAGGTTAGGAAGCTGGGTCTAGATATGCTGAGACAGCTCTCTTTGCATCATGACTACGTGTTGCAACTAGTGCAAGATGGATATTATCTTGAAGCCTTGC
GTTATGCTAGGAAGCACAAGGTTGTGACTGTCCGCCCCTCGTTGTTTCTGGAAGCTGCTTTGGCTTCTAATGATTCTCAACTCCTTGCTGCAGTGCTGAG
ATTCTTTTCAGATTTTACTCCAGGATTTAAAACCACTTCCGACTGCCATACCTACAATCGGATTCTCAATGAGATGAACTCAGCTGTAGCTGTTTGA
AA sequence
>Potri.006G195000.10 pacid=42767480 polypeptide=Potri.006G195000.10.p locus=Potri.006G195000 ID=Potri.006G195000.10.v4.1 annot-version=v4.1
MSGKASISQLSVSSSGSAGLSHVYIQHPPLRCNVPGSRGLFYDDGNKLLCSPTSDRVFSWKVAPFDPLVAPTSDLISEGPILSIRYSLDAKIIAIQRTSQ
EIQFFHRETGQNFCHKCKPESESILGFFWTDCPRCHFVLVKTSGLDLLACDAESKSFKLVETRKSNVSWYVYTHESRLVLLASGMQCKTFSGFQLSSAGI
VCLPKFEMVMAKSEANSKPVLAAEDVYIATIYGRIYCLQIDRVAMLLHSYRFYQDAVVQQGSLPIYSSKIAVSVVDNVLLIHQVDTKVVILYDIFVDSRA
PISAPLPLLFRGFPRSNASSSRSTIKDGESPEANISDSESNIYGDDWTFLIPDLTCNVSNKQLWKIHLDLEAISACSSEVPSVLEFLQHRRLEASKAKQL
CLAITHNLILERSPVLMVAKAIEVLIASYSQSLKTGSYLKGIKDTEDNVQFKSIKTNRKVNKEKLSGGAESSSTEVHTSSSQSQHLRPTNSPLNASVSER
QESEVTSPAISPDEMYSLVFAPVEEEMVGDSSYFVAIIVEFLRSASSVKKKVQPNIYVLAIQLLARNERYAELSLFIINKVLQPSKEVAMQLLEAGRQNS
QVRKLGLDMLRQLSLHHDYVLQLVQDGYYLEALRYARKHKVVTVRPSLFLEAALASNDSQLLAAVLRFFSDFTPGFKTTSDCHTYNRILNEMNSAVAV

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G12010 unknown protein Potri.006G195000
[exp]
0 1
AT4G16440 ferredoxin hydrogenases (.1) Potri.006G017000
[exp]
9.79 0.5851
AT5G04240 JUMONJI ELF6 EARLY FLOWERING 6, Zinc finger... Potri.008G037800
[exp]
14.07 0.5890
AT1G02100 SBI1 SUPPRESSOR OF BRI1, Leucine ca... Potri.014G047300
[exp]
15.87 0.5551
AT5G27380 GSHB, GSH2 glutathione synthetase 2 (.1) Potri.013G026800
[exp]
22.24 0.5512
AT4G05420 DDB1A damaged DNA binding protein 1A... Potri.001G357900
[exp]
29.51 0.5560 Pt-DDB1.1
AT4G30820 cyclin-dependent kinase-activa... Potri.006G180900
[exp]
34.98 0.5713
AT1G07910 ATRNL, RNL, AtR... ARABIDOPSIS THALIANA RNA LIGAS... Potri.016G083100
[exp]
39.24 0.5694
AT5G24400 PGL3, EMB2024 6-PHOSPHOGLUCONOLACTONASE 3, E... Potri.012G020100
[exp]
41.23 0.5351
AT2G30110 ATUBA1, MOS5 MODIFIER OF SNC1 5, ubiquitin-... Potri.009G075800
[exp]
42.14 0.5361 ATUBA1.3
AT2G33610 CHB2, ATSWI3B CHROMATIN REMODELING COMPLEX S... Potri.002G004800
[exp]
53.40 0.5369 (),CHB903,Pt-SWI3.1,of

Potri.006G195000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.