Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G58070 156 / 4e-47 C2H2ZnF GIS GLABROUS INFLORESCENCE STEMS, C2H2 and C2HC zinc fingers superfamily protein (.1) AT2G41940 152 / 1e-45 C2H2ZnF ZFP8 zinc finger protein 8 (.1) AT5G06650 131 / 4e-38 C2H2ZnF GIS2 GLABROUS INFLORESCENCE STEMS 2, C2H2 and C2HC zinc fingers superfamily protein (.1) AT1G67030 68 / 8e-14 C2H2ZnF ZFP6 zinc finger protein 6 (.1) AT1G68360 69 / 9e-14 C2H2ZnF C2H2 and C2HC zinc fingers superfamily protein (.1) AT1G24625 63 / 7e-12 C2H2ZnF ZFP7 zinc finger protein 7 (.1) AT1G80730 63 / 1e-11 C2H2ZnF ATZFP1, ZFP1 ARABIDOPSIS THALIANA ZINC-FINGER PROTEIN 1, zinc-finger protein 1 (.1) AT5G25160 62 / 1e-11 C2H2ZnF ZFP3 zinc finger protein 3 (.1) AT1G66140 58 / 8e-10 C2H2ZnF ZFP4 zinc finger protein 4 (.1) AT5G27880 58 / 8e-10 C2H2ZnF C2H2 and C2HC zinc fingers superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G060600 [exp] 413 / 1e-148 AT2G41940 155 / 1e-46 zinc finger protein 8 (.1) Potri.004G097900 [exp] 79 / 1e-17 AT1G67030 100 / 2e-26 zinc finger protein 6 (.1) Potri.017G116300 [exp] 74 / 9e-16 AT1G68360 99 / 6e-25 C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.002G199200 [exp] 73 / 9e-16 AT1G67030 71 / 2e-15 zinc finger protein 6 (.1) Potri.010G122400 [exp] 70 / 3e-14 AT1G68360 149 / 2e-44 C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.018G123800 [exp] 70 / 6e-14 AT5G25160 92 / 4e-22 zinc finger protein 3 (.1) Potri.006G063800 [exp] 69 / 2e-13 AT5G01860 92 / 6e-22 C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.008G123100 [exp] 66 / 7e-13 AT1G68360 123 / 4e-34 C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.018G123900 [exp] 66 / 9e-13 AT5G25160 88 / 2e-20 zinc finger protein 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021081 [exp] 171 / 9e-53 AT3G58070 147 / 3e-43 GLABROUS INFLORESCENCE STEMS, C2H2 and C2HC zinc fingers superfamily protein (.1) Lus10017229 [exp] 137 / 9e-41 AT3G58070 120 / 5e-34 GLABROUS INFLORESCENCE STEMS, C2H2 and C2HC zinc fingers superfamily protein (.1) Lus10016238 [exp] 130 / 1e-37 AT3G58070 118 / 1e-32 GLABROUS INFLORESCENCE STEMS, C2H2 and C2HC zinc fingers superfamily protein (.1) Lus10029204 [exp] 72 / 4e-15 AT1G68360 71 / 2e-14 C2H2 and C2HC zinc fingers superfamily protein (.1) Lus10033567 [exp] 70 / 3e-14 AT1G67030 113 / 2e-31 zinc finger protein 6 (.1) Lus10017609 [exp] 67 / 2e-13 AT1G67030 113 / 2e-31 zinc finger protein 6 (.1) Lus10018328 [exp] 62 / 1e-11 AT5G10970 94 / 6e-24 C2H2 and C2HC zinc fingers superfamily protein (.1) Lus10017125 [exp] 60 / 9e-11 AT5G10970 95 / 4e-24 C2H2 and C2HC zinc fingers superfamily protein (.1) Lus10026121 [exp] 59 / 7e-10 AT5G10970 85 / 1e-18 C2H2 and C2HC zinc fingers superfamily protein (.1) Lus10008698 [exp] 58 / 1e-09 AT1G80730 86 / 2e-19 ARABIDOPSIS THALIANA ZINC-FINGER PROTEIN 1, zinc-finger protein 1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.006G195100.1 pacid=42768214 polypeptide=Potri.006G195100.1.p locus=Potri.006G195100 ID=Potri.006G195100.1.v4.1 annot-version=v4.1 ATGGATAAGGTTGAAAGAGAGACTCATGACTTTATGAATGTGGAATCCTTCTCTCAGCTTCCATTCATCCGCCCCGCACCCGTCAAAGAAAAGGGCATTC GCCTCTTCGGCATAGAATTCGGCAGCAACAACGACAGTCCAGCAGCTGACGAGTCTGAGTCAGCCGAAACTAATGAAGACACCGTAAAAGAAAGCGAGAG TAGTGACAACAACCGAAGATTTGAATGCCATTACTGTTGCAGAAACTTCCCTACTTCTCAAGCCTTAGGTGGCCACCAAAACGCGCACAAAAGAGAGCGT CAGCACGCGAAACGTGCCCACCTCCAGTCGGCCATGGCTCACAACAGCCTTACAGATGCACACTATTATGGCCTTGTAAACTACAGGATAGATTCAACTC CGAGCTCAGCCATGACTTATCCTTCATGGAATAGCCACTCTAACACTAGCAGGTTTTACGGCAGTCATGGCTCCTATTCACAACAACCTATCAATGGAAG TCCATTAGGCTTGTGGCGGATCCCGGCTGTTCATGGTGGTGGTACTTTCCATCATAGTGACCGTTCGATGCATCATCCATTACCATTATTTGCAGGTGAG GAATTGAAACCCTCACCGGCCGGTACTGGTTCAAGCTCGCAAGGGCGGTATGGGTATGATTCCAAGCCGAGCGCGCAAGACCATGTTAGTTTAGATCTTC ATCTGTAA
AA sequence Show only first row Show all	>Potri.006G195100.1 pacid=42768214 polypeptide=Potri.006G195100.1.p locus=Potri.006G195100 ID=Potri.006G195100.1.v4.1 annot-version=v4.1 MDKVERETHDFMNVESFSQLPFIRPAPVKEKGIRLFGIEFGSNNDSPAADESESAETNEDTVKESESSDNNRRFECHYCCRNFPTSQALGGHQNAHKRER QHAKRAHLQSAMAHNSLTDAHYYGLVNYRIDSTPSSAMTYPSWNSHSNTSRFYGSHGSYSQQPINGSPLGLWRIPAVHGGGTFHHSDRSMHHPLPLFAGE ELKPSPAGTGSSSQGRYGYDSKPSAQDHVSLDLHL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G58070	C2H2ZnF	GIS	GLABROUS INFLORESCENCE STEMS, ...		Potri.006G195100 [exp]	0	1
AT3G49950	GRAS		GRAS family transcription fact...		Potri.007G119000 [exp]	4.89	0.9356
AT2G20570	GARP	ATGLK1, GLK1, G...	ARABIDOPSIS GOLDEN2-LIKE 1, GB...		Potri.007G136901 [exp]	5.65	0.9363
AT1G51400			Photosystem II 5 kD protein (....		Potri.001G256900 [exp]	8.71	0.9384
AT1G08380		PSAO	photosystem I subunit O (.1)		Potri.004G199400 [exp]	8.83	0.9427
AT1G22360		ATUGT85A2, AT2	UDP-glucosyl transferase 85A2 ...		Potri.017G052300 [exp]	9.74	0.9359
AT1G74100		SOT16, ATSOT16,...	CORONATINE INDUCED-7, ARABIDOP...		Potri.012G032700 [exp]	14.93	0.8662
AT1G55670		PSAG	photosystem I subunit G (.1)		Potri.001G471900 [exp]	16.61	0.9382	Pt-PSAG.1
AT1G29660			GDSL-like Lipase/Acylhydrolase...		Potri.018G089400 [exp]	18.57	0.9221
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Potri.018G088500 [exp]	19.07	0.9259
					Potri.014G124700 [exp]	24.97	0.9210

Compare expression of checked genes

Potri.006G195100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.