Plant FIBer expression Database

Potri.006G195500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.016G061300
[exp]
129 / 2e-40 AT3G61172 39 / 2e-05 low-molecular-weight cysteine-rich 8 (.1)
Flax homologues

No hit found
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0054 Knottin_1 PF07333 SLR1-BP S locus-related glycoprotein 1 binding pollen coat protein (SLR1-BP)
Representative CDS sequence
>Potri.006G195500.1 pacid=42769543 polypeptide=Potri.006G195466.1.p locus=Potri.006G195500 ID=Potri.006G195500.1.v4.1 annot-version=v4.1
ATGCTGAAAGATGAGGATATCCTATGCACTCTTCTCTCTTCTCTCCTGCTAGTCTCAGGTTATTCTCTCCCCTCTCTTCCAACCAAGAAGAAGCTGAGTC
TACAAGATCAAGCTGAAGCCAGAACGATGAGGATATCCTATGCATTCTTCTCTCTCCTGCTCCTGCTAGTCTCAGCTGAGTTTAGCCATGCCAGGGCAAT
CCATGGGGCCAGTGCGGCGAGGATTCCAGAGCACACGTGCCACAAGCTGCTAAGCATGAACAGATGTGACTTGCAGAAATGTAACCAAGAGTGTTCCCAG
GAACCTCTAGGGGTAGGAGAGTGTAGGAATGCCAACTGTTCTTGCACATATTATTGCAAGCAACCTCCAATGTAA
AA sequence
>Potri.006G195500.1 pacid=42769543 polypeptide=Potri.006G195466.1.p locus=Potri.006G195500 ID=Potri.006G195500.1.v4.1 annot-version=v4.1
MLKDEDILCTLLSSLLLVSGYSLPSLPTKKKLSLQDQAEARTMRISYAFFSLLLLLVSAEFSHARAIHGASAARIPEHTCHKLLSMNRCDLQKCNQECSQ
EPLGVGECRNANCSCTYYCKQPPM

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.006G195500
[exp]
0 1
Potri.008G069050
[exp]
3.00 0.9804
Potri.019G014330
[exp]
4.47 0.9854
AT2G25737 Sulfite exporter TauE/SafE fam... Potri.018G037400
[exp]
4.69 0.9577
AT3G23770 O-Glycosyl hydrolases family 1... Potri.001G321900
[exp]
5.29 0.9728 A6.1
AT2G19080 metaxin-related (.1) Potri.018G145080
[exp]
6.32 0.9393
Potri.012G026150
[exp]
8.12 0.9728
Potri.012G124700
[exp]
9.69 0.9343
AT1G79360 2-Oct, ATOCT2 ORGANIC CATION TRANSPORTER 2, ... Potri.010G174300
[exp]
10.00 0.9328
Potri.001G004432
[exp]
11.22 0.9621
AT1G75160 Protein of unknown function (D... Potri.002G262400
[exp]
12.56 0.8954

Potri.006G195500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.