Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G58560 904 / 0 DNAse I-like superfamily protein (.1) AT3G58580 904 / 0 DNAse I-like superfamily protein (.1) AT3G18500 134 / 1e-33 DNAse I-like superfamily protein (.1.2.3) AT1G31500 119 / 3e-29 DNAse I-like superfamily protein (.1.2.3.4) AT5G11350 110 / 6e-25 DNAse I-like superfamily protein (.1) AT1G73875 100 / 2e-22 DNAse I-like superfamily protein (.1) AT1G31530 50 / 1e-06 DNAse I-like superfamily protein (.1) AT1G02270 45 / 0.0002 Calcium-binding endonuclease/exonuclease/phosphatase family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G061700 [exp] 1090 / 0 AT3G58560 926 / 0.0 DNAse I-like superfamily protein (.1) Potri.003G106000 [exp] 111 / 3e-26 AT1G31500 457 / 1e-160 DNAse I-like superfamily protein (.1.2.3.4) Potri.018G032300 [exp] 101 / 3e-22 AT5G11350 560 / 0.0 DNAse I-like superfamily protein (.1) Potri.012G057100 [exp] 99 / 1e-21 AT1G73875 502 / 2e-176 DNAse I-like superfamily protein (.1) Potri.014G108200 [exp] 49 / 8e-06 AT5G54130 620 / 0.0 Calcium-binding endonuclease/exonuclease/phosphatase family (.2.3.4) Potri.012G007600 [exp] 47 / 3e-05 AT5G54130 721 / 0.0 Calcium-binding endonuclease/exonuclease/phosphatase family (.2.3.4) Potri.015G004200 [exp] 47 / 3e-05 AT5G54130 719 / 0.0 Calcium-binding endonuclease/exonuclease/phosphatase family (.2.3.4) Potri.002G182500 [exp] 44 / 0.0003 AT5G54130 600 / 0.0 Calcium-binding endonuclease/exonuclease/phosphatase family (.2.3.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012293 [exp] 1013 / 0 AT3G58560 949 / 0.0 DNAse I-like superfamily protein (.1) Lus10029338 [exp] 998 / 0 AT3G58560 945 / 0.0 DNAse I-like superfamily protein (.1) Lus10016206 [exp] 996 / 0 AT3G58560 944 / 0.0 DNAse I-like superfamily protein (.1) Lus10015981 [exp] 919 / 0 AT3G58580 872 / 0.0 DNAse I-like superfamily protein (.1) Lus10036357 [exp] 121 / 3e-29 AT3G18500 422 / 2e-145 DNAse I-like superfamily protein (.1.2.3) Lus10014775 [exp] 119 / 1e-28 AT3G18500 423 / 7e-146 DNAse I-like superfamily protein (.1.2.3) Lus10026203 [exp] 110 / 5e-26 AT1G31500 458 / 2e-162 DNAse I-like superfamily protein (.1.2.3.4) Lus10013119 [exp] 103 / 1e-22 AT5G11350 536 / 0.0 DNAse I-like superfamily protein (.1) Lus10032490 [exp] 101 / 2e-22 AT1G73875 446 / 3e-154 DNAse I-like superfamily protein (.1) Lus10008086 [exp] 101 / 4e-22 AT5G11350 526 / 9e-178 DNAse I-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0530 [poplar] [flax] DNase_I-like PF03372 [poplar] [flax] Exo_endo_phos Endonuclease/Exonuclease/phosphatase family CL0175 [poplar] [flax] TRASH PF15801 [poplar] [flax] zf-C6H2 zf-MYND-like zinc finger, mRNA-binding
Representative CDS sequence Show only first row Show all	>Potri.006G195600.3 pacid=42769475 polypeptide=Potri.006G195600.3.p locus=Potri.006G195600 ID=Potri.006G195600.3.v4.1 annot-version=v4.1 ATGCTGAGCGTGCTGCGTGTGCATCTTCCATCGGATATTCCTATTGTTGGCTGTGAGTTAACGCCGTATGTTGTTTTACGGCGACCTGATAAGGATTATA TTACCGATGATGTGCCCGAGTCTGCCCCTCTTGACGGTCATTTCTTGAGATATAAGTGGTATCGGATACAGAGTGATAGAAAAGTTGCTGTATGTAGTGT ACATCCATCTGAGCATGCTACACTGCAGTGTATAGGTTGTGTTAAGGCCAAAATACCTGTTGCCAAAAGTTACCATTGCTCTCCCAAGTGCTTCTCTGAT GCATGGCAGCATCATCGTGTTCTACATGATCGAGCTGCAAGTGCTGTAAATGAAAATGGAAATGAGGAGGAAGAGTTGTTTGGGCGTTATAATAGCTCAG GATCTGGAGTTCTTAATACTAGTTTATCTGGTTCTGCATCAAGTGCTAGCTTGACAAATGGTTCCACGCCTTTGTATCCTGCGGCGGTGACACAGAGGAG TGGTGAAACTTGGTTTGAGGTTGGGCGTTCCAAAATATATACACCATCAGCTGATGATATTGGCCATGTTCTCAAGTTTGAATGCGTTGTGGTAGATGCA GAAACTAAATTACCTGTAGGACATCCAAACACACTATTAACTTCCCGTGTCATTCCAGCCCCCTCCCCAACTCCACGTCGTTTGATCCCAGTTAGTGGAC TTGATGCAATGGTGCCTTTAGATTTGGATGGTCGTATCTCATCAACTGGAACCTTTACTGTGCTCTCATACAACATTTTATCTGATGTGTATGCTACAAA TGAAACATACAGTTATTGTCCTTCATGGGCTCTTTCTTGGCCATATCGTCGACAGAACTTACTGAGGGAAATAGTTGGCTATCGTGCAGACATTGTTTGT CTTCAGGAGGTACAAAGTGATCATTATGAGGAATTTTTTGCCCCTGAGCTGGACAAGCATGGTTATCAAGCCCTATATAAGAGAAAAACTAACGAGGTCT ATGCTGGAAATACCCATACAATTGATGGTTGTGCAACATTTTTCCGCAGAGATAGATTTTCACATGTTAAAAAATATGAGGTTGAATTTAATAAGGCTGC TCAGTCTTTGACTGATGCGCTGGTTCCAAGTGCTCAAAGAAAAACTGCTCTAAATCGATTAGTTAAGGATAATGTTGCATTAATAGTTGTTCTGGAAGCA AAATTTAGTAATCAAGGAGTTGATAATCCTGGGAAGCGGCAGCTACTTTGTGTTGCAAATACACATATAAATGTTCACCAGGATTTAAAGGATGTCAAGC TTTGGCAGGTCCTTACTCTCTTGAAAGGATTGGAGAAAATAGCTGCTAGTGCTGACATTCCTATGTTGGTGTGTGGAGATTTCAATTCAGTTCCTGGAAG TGCTCCCCATTCTCTTCTTGCAATGGGTAAGGTGGATCCATTGCATCCGGATTTAGTAGTAGACCCTCTTGGAATCTTACGGCCTCACAACAAGCTTACA CATCAGCTGCCGCTGGTCAGTGCATACTCATCTTTTGCAAGAGTGGGCGTTGGTCTTGGTTCAGATCAGCAGAGGAGGAGAATGGACGCTACAACAAATG AACCCTTATTTACGAATTGCACTAGAGACTTTATCGGTGCCCTAGATTATATATTTTACACAGCGGACTCTTTAATGGTGGAGTCTTTGTTGGAACTATT GGATGAGGAAAGCTTGAGGAAAGACACAGCCCTTCCTTCTCCAGAGTGGTCTTCAGATCATATAGCACTTCTTGCTGAATTTCGTTGCAAGAATAGACCA AGACGTTGA
AA sequence Show only first row Show all	>Potri.006G195600.3 pacid=42769475 polypeptide=Potri.006G195600.3.p locus=Potri.006G195600 ID=Potri.006G195600.3.v4.1 annot-version=v4.1 MLSVLRVHLPSDIPIVGCELTPYVVLRRPDKDYITDDVPESAPLDGHFLRYKWYRIQSDRKVAVCSVHPSEHATLQCIGCVKAKIPVAKSYHCSPKCFSD AWQHHRVLHDRAASAVNENGNEEEELFGRYNSSGSGVLNTSLSGSASSASLTNGSTPLYPAAVTQRSGETWFEVGRSKIYTPSADDIGHVLKFECVVVDA ETKLPVGHPNTLLTSRVIPAPSPTPRRLIPVSGLDAMVPLDLDGRISSTGTFTVLSYNILSDVYATNETYSYCPSWALSWPYRRQNLLREIVGYRADIVC LQEVQSDHYEEFFAPELDKHGYQALYKRKTNEVYAGNTHTIDGCATFFRRDRFSHVKKYEVEFNKAAQSLTDALVPSAQRKTALNRLVKDNVALIVVLEA KFSNQGVDNPGKRQLLCVANTHINVHQDLKDVKLWQVLTLLKGLEKIAASADIPMLVCGDFNSVPGSAPHSLLAMGKVDPLHPDLVVDPLGILRPHNKLT HQLPLVSAYSSFARVGVGLGSDQQRRRMDATTNEPLFTNCTRDFIGALDYIFYTADSLMVESLLELLDEESLRKDTALPSPEWSSDHIALLAEFRCKNRP RR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G58560			DNAse I-like superfamily prote...		Potri.006G195600 [exp]	0	1
AT5G57740		XBAT32	XB3 ortholog 2 in Arabidopsis ...		Potri.006G176600 [exp]	4.89	0.8312
AT1G48110		ECT7	evolutionarily conserved C-ter...		Potri.010G152300 [exp]	5.00	0.8614
AT1G33240	Trihelix	AT-GTL2, AT-GTL...	GT2-LIKE 1, GT-2-like 1 (.1)		Potri.001G454500 [exp]	9.00	0.8139
AT3G01150		ATPTB1, PTB	polypyrimidine tract-binding p...		Potri.017G085400 [exp]	10.00	0.7560
AT4G01290			unknown protein		Potri.002G163000 [exp]	10.09	0.8343
AT5G15400			U-box domain-containing protei...		Potri.017G089600 [exp]	10.53	0.7622
AT3G06010		ATCHR12	Homeotic gene regulator (.1)		Potri.010G091200 [exp]	11.31	0.8303
AT3G10070		TAF12, TAFII58	TATA-ASSOCIATED FACTOR II 58, ...		Potri.006G083500 [exp]	18.57	0.8284	Pt-TAFII58.1
AT1G50620			RING/FYVE/PHD zinc finger supe...		Potri.001G358900 [exp]	19.62	0.8224
AT5G46210		CUL4, ATCUL4	cullin4 (.1)		Potri.004G132900 [exp]	21.44	0.6959

Compare expression of checked genes

Potri.006G195600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.