Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G58530 477 / 7e-170 RNI-like superfamily protein (.1) AT4G15475 96 / 2e-21 F-box/RNI-like superfamily protein (.1) AT5G23340 94 / 2e-21 RNI-like superfamily protein (.1) AT1G21410 91 / 4e-20 SKP2A F-box/RNI-like superfamily protein (.1) AT1G77000 84 / 8e-18 ATSKP2;2, SKP2B ARABIDOPSIS HOMOLOG OF HOMOLOG OF HUMAN SKP2 2, RNI-like superfamily protein (.1.2) AT5G21900 75 / 2e-14 RNI-like superfamily protein (.1) AT5G27920 74 / 2e-14 F-box family protein (.1) AT5G01720 72 / 2e-13 RNI-like superfamily protein (.1) AT5G25350 72 / 2e-13 EBF2 EIN3-binding F box protein 2 (.1) AT2G25490 67 / 4e-12 FBL6, EBF1 EIN3-binding F box protein 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G105400 [exp] 96 / 2e-21 AT5G01720 712 / 0.0 RNI-like superfamily protein (.1) Potri.005G088800 [exp] 92 / 1e-20 AT5G23340 567 / 0.0 RNI-like superfamily protein (.1) Potri.019G123400 [exp] 85 / 8e-18 AT5G01720 604 / 0.0 RNI-like superfamily protein (.1) Potri.005G185700 [exp] 84 / 1e-17 AT1G77000 523 / 0.0 ARABIDOPSIS HOMOLOG OF HOMOLOG OF HUMAN SKP2 2, RNI-like superfamily protein (.1.2) Potri.016G128400 [exp] 81 / 2e-16 AT5G01720 712 / 0.0 RNI-like superfamily protein (.1) Potri.005G022600 [exp] 79 / 8e-16 AT5G27920 626 / 0.0 F-box family protein (.1) Potri.002G074700 [exp] 77 / 1e-15 AT1G21410 518 / 0.0 F-box/RNI-like superfamily protein (.1) Potri.013G013100 [exp] 78 / 2e-15 AT5G27920 631 / 0.0 F-box family protein (.1) Potri.006G254100 [exp] 74 / 3e-14 AT2G25490 795 / 0.0 EIN3-binding F box protein 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012294 [exp] 508 / 0 AT3G58530 474 / 7e-169 RNI-like superfamily protein (.1) Lus10015980 [exp] 471 / 2e-167 AT3G58530 442 / 4e-156 RNI-like superfamily protein (.1) Lus10040998 [exp] 94 / 4e-21 AT5G23340 595 / 0.0 RNI-like superfamily protein (.1) Lus10013444 [exp] 92 / 2e-20 AT5G23340 591 / 0.0 RNI-like superfamily protein (.1) Lus10012764 [exp] 91 / 2e-19 AT4G15475 813 / 0.0 F-box/RNI-like superfamily protein (.1) Lus10011626 [exp] 84 / 9e-18 AT5G27920 107 / 3e-25 F-box family protein (.1) Lus10028645 [exp] 82 / 3e-17 AT1G21410 520 / 0.0 F-box/RNI-like superfamily protein (.1) Lus10034013 [exp] 82 / 7e-17 AT2G20790 808 / 0.0 clathrin adaptor complexes medium subunit family protein (.1.2.3) Lus10002014 [exp] 82 / 1e-16 AT2G25490 766 / 0.0 EIN3-binding F box protein 1 (.1) Lus10018942 [exp] 79 / 4e-16 AT1G21410 513 / 0.0 F-box/RNI-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF13516 [poplar] [flax] LRR_6 Leucine Rich repeat
Representative CDS sequence Show only first row Show all	>Potri.006G195800.6 pacid=42768896 polypeptide=Potri.006G195800.6.p locus=Potri.006G195800 ID=Potri.006G195800.6.v4.1 annot-version=v4.1 ATGGATGCAAAAGAAATCGAACCGAAGCGAACAACGACAACAACATGGAACACAGAAACAATCCCAAAAGTAATGAAAATTGTCAGCACAAAACTCCCTC AAAGAGACCTCATTTCTCTTTTACTTGTCAGCCCCTGGCTTTACAGGACACTCACTTCCTTCCCACCTCTCTGGATGGCTCTTGATTTTCGTGAGATGAA TAAAGCTGGAGATAGACTCATTGCTGCTACTTCACTGCCAAGATATCAGCACGTGAAGGAGATAAACCTTGAATTTGCACAAGATATCGAAGACGAACAT CTAGAAGTCCTGCAAAGCAAGTGTTTTGTTTCTCTTCAAAAACTGGAGTCTTTAAACCTGAATGGCTGCCAAAAGATATCTGACAAAGGAATAGAAGCAA TAACCAGTACTTGTTCTAAACTAAAGGTCTTCTCTATTTATTGGAATGTCAGGGTAACAGACATTGGTATAAAGCACGTGGTGGAAAATTGCAAGCAAAT TGTTGATTTGAACTTGAGTGGGTGTAAGAATATATCTGACAAAGCCTTGCAATTAATTGCTGAAAATTATCAAGAATTGGAGTCATTGAACCTGACTAGG TGCATCAAGCTAACAGATGGTGGCTTGCAACAAATATTATCCAAGTGCTCCTCTCTACAGAGTTTAAATCTTTATGCTCTTTCCAGTTTCACAGACAAAG CCTATAAGAAGATATCAAGTCTATCCCTTCTAAAATTTTTAGATCTATGTGGTGCGCAGAATCTATCTGATGAAGGACTCTCTTGTATAGCTAAATGCAA GAATATTGTCTCTCTCAATTTGACATGGTGTGTTCGTGTCACTGATGTGGGGGCTGTAGCTATTGCTGAAGGTTGCACCTCTCTTGAATTTCTCAGCTTG TTTGGAATAGTTGGTGTGACAGATAAGTGCCTGGAGGTCCTTTCAAGGTTCTGCTCAAACACAGTTACAACCCTTGATGTAAATGGATGCATTGGCATAA AGAGACGAAGCCGTGATGAATTGCTTCAATTGTTTCCTCGTTTGAGGTGTTTTAAAGTGCACAGCTGA
AA sequence Show only first row Show all	>Potri.006G195800.6 pacid=42768896 polypeptide=Potri.006G195800.6.p locus=Potri.006G195800 ID=Potri.006G195800.6.v4.1 annot-version=v4.1 MDAKEIEPKRTTTTTWNTETIPKVMKIVSTKLPQRDLISLLLVSPWLYRTLTSFPPLWMALDFREMNKAGDRLIAATSLPRYQHVKEINLEFAQDIEDEH LEVLQSKCFVSLQKLESLNLNGCQKISDKGIEAITSTCSKLKVFSIYWNVRVTDIGIKHVVENCKQIVDLNLSGCKNISDKALQLIAENYQELESLNLTR CIKLTDGGLQQILSKCSSLQSLNLYALSSFTDKAYKKISSLSLLKFLDLCGAQNLSDEGLSCIAKCKNIVSLNLTWCVRVTDVGAVAIAEGCTSLEFLSL FGIVGVTDKCLEVLSRFCSNTVTTLDVNGCIGIKRRSRDELLQLFPRLRCFKVHS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G58530			RNI-like superfamily protein (...		Potri.006G195800 [exp]	0	1
AT1G21790			TRAM, LAG1 and CLN8 (TLC) lipi...		Potri.005G178200 [exp]	6.32	0.5965
AT5G10780			unknown protein		Potri.018G016800 [exp]	11.53	0.5810
AT3G11397		PRA1.A3	prenylated RAB acceptor 1.A3 (...		Potri.008G060400 [exp]	14.42	0.6096
AT5G64500			Major facilitator superfamily ...		Potri.001G286600 [exp]	31.46	0.5624
					Potri.006G077750 [exp]	55.51	0.5557
					Potri.003G189601 [exp]	64.96	0.5572
AT1G65480		FT	FLOWERING LOCUS T, PEBP (phosp...		Potri.010G179900 [exp]	80.12	0.5466
AT5G17050		UGT78D2	UDP-glucosyl transferase 78D2 ...		Potri.013G118700 [exp]	86.81	0.5230
AT5G17220		GST26, TT19, AT...	TRANSPARENT TESTA 19, GLUTATHI...		Potri.017G138800 [exp]	88.79	0.5510	ATGSTF10.1
AT1G65480		FT	FLOWERING LOCUS T, PEBP (phosp...		Potri.010G179801 [exp]	90.86	0.5440

Compare expression of checked genes

Potri.006G195800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.