Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G58520 577 / 0 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) AT5G48040 275 / 2e-88 Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT2G39120 210 / 1e-63 WTF9 what's this factor 9, Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT1G71850 210 / 5e-63 Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT4G24320 182 / 5e-53 Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT3G63090 158 / 5e-44 Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT5G45790 155 / 2e-43 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) AT5G21970 157 / 5e-43 Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT1G06440 140 / 2e-37 Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT4G01037 140 / 1e-36 AtWTF1 what's this factor?, Ubiquitin carboxyl-terminal hydrolase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G230900 [exp] 293 / 2e-95 AT5G48040 484 / 9e-171 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.013G115500 [exp] 219 / 3e-64 AT1G71850 474 / 1e-161 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.008G036600 [exp] 211 / 5e-64 AT2G39120 509 / 0.0 what's this factor 9, Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.004G223200 [exp] 192 / 1e-56 AT4G24320 437 / 4e-152 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.002G220000 [exp] 172 / 3e-49 AT3G63090 499 / 7e-177 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.005G191100 [exp] 164 / 5e-46 AT2G31290 575 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) Potri.016G030300 [exp] 148 / 9e-40 AT5G45790 466 / 8e-163 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) Potri.014G096800 [exp] 142 / 2e-37 AT4G01037 588 / 0.0 what's this factor?, Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.002G169300 [exp] 138 / 1e-35 AT4G01037 586 / 0.0 what's this factor?, Ubiquitin carboxyl-terminal hydrolase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015979 [exp] 615 / 0 AT3G58520 564 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) Lus10000847 [exp] 549 / 0 AT3G58520 501 / 1e-178 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) Lus10012201 [exp] 273 / 8e-88 AT5G48040 424 / 1e-147 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10011327 [exp] 268 / 8e-86 AT5G48040 425 / 1e-147 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10017896 [exp] 216 / 2e-63 AT1G71850 478 / 7e-164 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10035074 [exp] 215 / 3e-63 AT1G71850 479 / 5e-164 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10038710 [exp] 202 / 4e-60 AT2G39120 467 / 4e-164 what's this factor 9, Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10000096 [exp] 167 / 6e-47 AT3G63090 561 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10000098 [exp] 163 / 1e-45 AT3G63090 557 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10005750 [exp] 145 / 2e-39 AT1G71850 263 / 9e-85 Ubiquitin carboxyl-terminal hydrolase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11955 [poplar] [flax] PORR Plant organelle RNA recognition domain
Representative CDS sequence Show only first row Show all	>Potri.006G195900.1 pacid=42769310 polypeptide=Potri.006G195900.1.p locus=Potri.006G195900 ID=Potri.006G195900.1.v4.1 annot-version=v4.1 ATGATGTTCAAAACCCACAATTCTCTTATTACATTAAAAACCTTATTACAATCAAAATCCCAGCTTGAACCTCAAAGCAACAAACTTTACGATTTTTTCC AAAGTCGGTCCATTGTAAAAGTTAGGCTTAAATGGGTGAAAAACCGATCTTTAGACAATATAATTGATACAGAAACTGATCTTAAAGCAGCTTGTCTTTT AAAAGATGCAATCAAAAGGTCTCCTACTGGATTTCTCACTGCAAAGTCTGTCTCTGAGTGGCAAAAACTTCTTGGCCTTACTGTCCCTGTTTTACGTTTC ATGCGCAGGTACCCAACTCTTTTTAATGAGTTTCCACATGCTCAATACACAAATTTGCCTTGTTTTCGGTTAACAGACACTGCGCTCTTGCTAGATTCAC AAGAACAAACTATCCATCAAACTTATGAGAGTGATACAGTGGAAAGACTTTGTAGAGTGCTTATGATGATGAAGAGTCAGACAGTGCCCCTTCAATCACT ACACCCCTTGAAATGGGATCTGGGTTTGCCTGTTAACTTCGAGAAAGTACTGATACCTAAGTATCCTGACCATTTTCAATTTGCTAAGGCACCAAATGGG ACTAGGAGTTTGCGGCTTGTGCAATGGCATGAAGAATTTGCAGTTACGGCATTGCAGAGGAGCAATGAGACTGGTGAAAAGGGTAAGGAGTATCGGCAGT TTAAGAGTGGGTACACAGCTTTGACTTTCCCAATGAGTTTTCCAAAGGGCTATGGAGGGCAGAAGAAAGTGAGAGCATGGATGGAGGAGTTTCACAAATT ACCTTATATTTCACCTTATGATGATTCAAAAAGGATTGACCCGGATAGTGAACTCATGGAGAAACGGGTTGTTGGAGTTCTGCATGAGCTTTTGAGCCTC ACAATTCATAAGAAGACTAAGAGAAACTACGTGAGGAGCCTGAGAGAGGAATTAATTCTTCCTCATAAGTTTACTCGACTCTTTACAAGGTATCCAGGGA TTTTCTACCTCTCGTTGAAGTGTAAGACAACAACTGTTGCTCTAAGAGAAGGTTACAGGCGTGGAAAATTAGCAAATCCACATCCTCTTGCTCGTCTAAG AGAAAAGTTTTATCATGTGATGAGGACAGGGCTTCTTTATCGCGATAGAGGTGTAAAGATGATTCCTCAGGAAATTTTGCTAAATGACGTGGACGATGAA ACTGGACAAGAAGAATCTGAGGAGGAAGAGGTTGAAATAGGTGATGACTGCTACGAGGAAACCTCTGAGATGGGAGAGGATTCTGATGAAGATTAG
AA sequence Show only first row Show all	>Potri.006G195900.1 pacid=42769310 polypeptide=Potri.006G195900.1.p locus=Potri.006G195900 ID=Potri.006G195900.1.v4.1 annot-version=v4.1 MMFKTHNSLITLKTLLQSKSQLEPQSNKLYDFFQSRSIVKVRLKWVKNRSLDNIIDTETDLKAACLLKDAIKRSPTGFLTAKSVSEWQKLLGLTVPVLRF MRRYPTLFNEFPHAQYTNLPCFRLTDTALLLDSQEQTIHQTYESDTVERLCRVLMMMKSQTVPLQSLHPLKWDLGLPVNFEKVLIPKYPDHFQFAKAPNG TRSLRLVQWHEEFAVTALQRSNETGEKGKEYRQFKSGYTALTFPMSFPKGYGGQKKVRAWMEEFHKLPYISPYDDSKRIDPDSELMEKRVVGVLHELLSL TIHKKTKRNYVRSLREELILPHKFTRLFTRYPGIFYLSLKCKTTTVALREGYRRGKLANPHPLARLREKFYHVMRTGLLYRDRGVKMIPQEILLNDVDDE TGQEESEEEEVEIGDDCYEETSEMGEDSDED

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G58520			Ubiquitin carboxyl-terminal hy...		Potri.006G195900 [exp]	0	1
AT3G22470			Pentatricopeptide repeat (PPR)...		Potri.007G068400 [exp]	4.89	0.7462
AT5G07900			Mitochondrial transcription te...		Potri.008G216200 [exp]	6.48	0.7076
AT4G10130			DNAJ heat shock N-terminal dom...		Potri.014G032000 [exp]	7.48	0.7228
AT1G18440			Peptidyl-tRNA hydrolase family...		Potri.012G061100 [exp]	14.00	0.7394
AT3G61170			Tetratricopeptide repeat (TPR)...		Potri.002G155100 [exp]	15.87	0.6871
AT2G45130		ATSPX3	ARABIDOPSIS THALIANA SPX DOMAI...		Potri.001G135950 [exp]	17.49	0.7657
AT1G73940			unknown protein		Potri.001G453400 [exp]	17.66	0.7238
					Potri.002G133566 [exp]	18.89	0.7491
AT1G17147			VQ motif-containing protein (....		Potri.001G378300 [exp]	22.44	0.6950
AT3G57340			Heat shock protein DnaJ, N-ter...		Potri.006G153700 [exp]	24.91	0.7040

Compare expression of checked genes

Potri.006G195900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.