Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G58570 789 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G42520 789 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G58510 761 / 0 DEA(D/H)-box RNA helicase family protein (.1), DEA(D/H)-box RNA helicase family protein (.2), DEA(D/H)-box RNA helicase family protein (.3) AT1G55150 330 / 3e-106 DEA(D/H)-box RNA helicase family protein (.1) AT5G63120 330 / 2e-105 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT5G14610 330 / 1e-104 DEAD box RNA helicase family protein (.1.2) AT3G01540 325 / 7e-103 ATDRH1, DRH1 ARABIDOPSIS THALIANA DEAD BOX RNA HELICASE 1, DEAD box RNA helicase 1 (.1.2.3.4) AT3G06480 313 / 2e-94 DEAD box RNA helicase family protein (.1) AT5G51280 296 / 2e-92 DEAD-box protein abstrakt, putative (.1) AT2G33730 298 / 1e-91 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G061900 [exp] 942 / 0 AT2G42520 786 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.001G007900 [exp] 783 / 0 AT2G42520 807 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.003G217800 [exp] 772 / 0 AT2G42520 812 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.003G038300 [exp] 329 / 6e-106 AT1G55150 790 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.015G083000 [exp] 326 / 2e-103 AT5G63120 707 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.017G071400 [exp] 326 / 1e-101 AT5G14610 792 / 0.0 DEAD box RNA helicase family protein (.1.2) Potri.013G158000 [exp] 319 / 1e-101 AT1G55150 322 / 3e-104 DEA(D/H)-box RNA helicase family protein (.1) Potri.019G130900 [exp] 318 / 6e-101 AT1G55150 321 / 2e-103 DEA(D/H)-box RNA helicase family protein (.1) Potri.012G084600 [exp] 319 / 1e-100 AT5G63120 704 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016207 [exp] 773 / 0 AT2G42520 850 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10000849 [exp] 768 / 0 AT2G42520 837 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10015976 [exp] 762 / 0 AT2G42520 849 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10015977 [exp] 717 / 0 AT2G42520 738 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10029337 [exp] 666 / 0 AT2G42520 728 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10000848 [exp] 629 / 0 AT2G42520 655 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10030075 [exp] 575 / 0 AT3G58570 603 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10015978 [exp] 521 / 0 AT3G58570 535 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10001074 [exp] 513 / 1e-178 AT3G58570 533 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10015627 [exp] 326 / 1e-104 AT1G55150 845 / 0.0 DEA(D/H)-box RNA helicase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00270 [poplar] [flax] DEAD DEAD/DEAH box helicase CL0023 [poplar] [flax] P-loop_NTPase PF00271 [poplar] [flax] Helicase_C Helicase conserved C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.006G196000.4 pacid=42767124 polypeptide=Potri.006G196000.4.p locus=Potri.006G196000 ID=Potri.006G196000.4.v4.1 annot-version=v4.1 ATGAGAACTTCATGGGCAGATTCTGTGGCTAACTCTGCATCTGAGAATGCAGCATCTGGTCCGCGTCCTACTCGTGCCACTTACATTCCGCCACACCTTC GTAACCGGCCACCATCTTCTGATTTCCTGGCGCCACCACCTGCTGCTCCGTCATTAGGGAATGATCGTGTAGGTTATGGTGGGCCAGCGGGTGGTTCTCG ATGGGGTGGCGGTGGCGGCAGTGCTTCGAAACCGGATTCTGGGCGCTTAGGTTATGGTTCTGGTGGTAGAGGAGGTGGTGGTGGTGGTGGTGGTGGTGGT GGTTGGAATAATAGAATGGAACGTGGGAGGGAGCGTGAGGTGAATCCATTTGATGAAGATGGTGATGCAGAGCCGGCTTTTGGCGTGCAAGAGAATACAG GAATTAACTTTGATGCGTATGAGGATATTCCTGTGGAGACGAGTGGGCAAAATGTGCCACCACCTGTGAATACCTTTGCAGAGATAGACCTGGGTGAGGC AGTGAATCAGAATATTCGGAGATGCAAGTATGTGAAGCCAACTCCAGTGCAGCGCAATGCAATCCCAATATTGCTTGCTGGGAGGGACCTGATGGCTTGT GCTCAGACAGGGTCAGGGAAGACAGCTGCCTTTTGCTTTCCAATAATTGCTGGAATTATGCGGGAGCAGTATGTGCAGAGACCACATGGAGGGAGGACAG TGTACCCACTGGCTCTCATTCTTTCTCCTACAAGGGAGCTTTCGTGTCAGATACACGATGAAGCCAAAAAATTCGCCTATCAAACTGGTGTCAAGGTGGT GGTAGTTTATGGAGGTGCTCCTGTCAACCAACAGTTGCGAGAACTTGAGAGAGGGGTTGATGTTCTAGTGGCAACTCCTGGACGGTTAGTGGATTTGGTT GAGAGGGCTAGAGTGTCATTGCAGATGATCAGATATTTAGCACTTGATGAGGCAGACAGGATGCTGGATATGGGATTTGAACCTCAGATTAGAAAGATAG TGGAACAAATGGACATGCCCCCATGTGGCAGGAGACAGACAATGCTGTTCAGTGCCACCTTTCCTAAAGAAATACAGAGACTTGCATCTGATTTTCTTTC AAATTACATATTTTTGGCTGTCGGAAGGGTCGGTTCGAGTACTGATTTAATTGTTCAAAGAGTTGAATATGTTCATGAGACTGACAAGAGAAGTCATCTC ATGGACCTTCTTCATGCTCAGAGAGAAACTGAAGTTAATGGCAAGCATTCTCTGACATTAGTTTTTGTGGAGACAAAGAAGGGAGCCGACTCATTGGAAC ATTGGTTGTATGTCAATAAATTTCCTGCTACATCAATTCATGGAGATAGATCACAACAGGAAAGAGAAATGGCACTTAGATCATTCAAGAGTGGGAAGAC GCCAATTCTAGTTGCGACAGATGTGGCAGCAAGGGGTCTTGATATACCCCATGTGGCTCATGTGGTGAATTTTGATCTTCCAAATGACATTGACGATTAT GTTCACCGGATAGGGCGAACAGGGCGAGCTGGAAAAACAGGTCTGGCTACAGCATTTTTTAATGAGAATAATTTGTCATTAGCAAGACCTCTAGCTGATC TTATGCAAGAAGCAAATCAAGAAGTGCCTGCCTGGCTCACCCGTTATGCTTCACGGGTTTCATTTAGTGGTGGCAAGAATCGGCGCTCTGGGGGAGCCCG TTTTGGTGGCCGTGATATGAGAAGGGATGGCTCTTTTAACAGGGGTGTAGATTATTATGGAGGAAACAGTAGTAGCGGTGGATATGGGGTTTCTGCTGGT TATGGTGGGGGTTACAATCCAGCTGTAGCCAGTGCTTGGGATTAG
AA sequence Show only first row Show all	>Potri.006G196000.4 pacid=42767124 polypeptide=Potri.006G196000.4.p locus=Potri.006G196000 ID=Potri.006G196000.4.v4.1 annot-version=v4.1 MRTSWADSVANSASENAASGPRPTRATYIPPHLRNRPPSSDFLAPPPAAPSLGNDRVGYGGPAGGSRWGGGGGSASKPDSGRLGYGSGGRGGGGGGGGGG GWNNRMERGREREVNPFDEDGDAEPAFGVQENTGINFDAYEDIPVETSGQNVPPPVNTFAEIDLGEAVNQNIRRCKYVKPTPVQRNAIPILLAGRDLMAC AQTGSGKTAAFCFPIIAGIMREQYVQRPHGGRTVYPLALILSPTRELSCQIHDEAKKFAYQTGVKVVVVYGGAPVNQQLRELERGVDVLVATPGRLVDLV ERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPCGRRQTMLFSATFPKEIQRLASDFLSNYIFLAVGRVGSSTDLIVQRVEYVHETDKRSHL MDLLHAQRETEVNGKHSLTLVFVETKKGADSLEHWLYVNKFPATSIHGDRSQQEREMALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDY VHRIGRTGRAGKTGLATAFFNENNLSLARPLADLMQEANQEVPAWLTRYASRVSFSGGKNRRSGGARFGGRDMRRDGSFNRGVDYYGGNSSSGGYGVSAG YGGGYNPAVASAWD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G58570			P-loop containing nucleoside t...		Potri.006G196000 [exp]	0	1
AT1G79090			unknown protein		Potri.011G143900 [exp]	7.48	0.8538
AT3G61670			Protein of unknown function (D...		Potri.003G137700 [exp]	11.74	0.8510
AT2G32700		MUM1, LUH	MUCILAGE-MODIFIED 1, LEUNIG_ho...		Potri.003G178600 [exp]	12.64	0.8365
AT2G31400		GUN1	genomes uncoupled 1 (.1)		Potri.002G193900 [exp]	15.29	0.8442
AT1G07510		FTSH10	FTSH protease 10 (.1)		Potri.009G033600 [exp]	15.71	0.8221
AT1G32330	HSF	ATHSFA1D	heat shock transcription facto...		Potri.003G095000 [exp]	15.74	0.7975	Pt-ATHSFA1.1
AT1G50620			RING/FYVE/PHD zinc finger supe...		Potri.001G358900 [exp]	16.70	0.8364
AT5G56290		EMB2790, PEX5, ...	EMBRYO DEFECTIVE 2790, ARABIDO...		Potri.011G170000 [exp]	17.94	0.8307	Pt-PEX5.1
AT1G31830			Amino acid permease family pro...		Potri.003G103600 [exp]	18.16	0.8470
AT5G25520			SPOC domain / Transcription el...		Potri.006G246800 [exp]	18.22	0.8491

Compare expression of checked genes

Potri.006G196000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.