Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G58500 620 / 0 PP2A-4, EP7, PP2A-3 protein phosphatase 2A-4 (.1) AT2G42500 616 / 0 PP2A-3, PP2A-4 protein phosphatase 2A-3 (.1.2.3) AT1G10430 528 / 0 PP2A-2 protein phosphatase 2A-2 (.1) AT1G59830 525 / 0 PP2A-1 protein phosphatase 2A-2 (.1.2) AT1G69960 523 / 0 PP2A serine/threonine protein phosphatase 2A (.1) AT4G26720 429 / 1e-152 PPX-1, EP129, EP124, PPX1 PROTEIN PHOSPHATASE X-1, protein phosphatase X 1 (.1) AT5G55260 426 / 2e-151 EP128, PPX-2, PPX2 PROTEIN PHOSPHATASE X -2, protein phosphatase X 2 (.1) AT3G19980 365 / 2e-127 STPP, ATFYPP3, EMB2736 SERINE/THREONINE PROTEIN PHOSPHATASE, EMBRYO DEFECTIVE 2736, "flower-specific, phytochrome-associated protein phosphatase 3", flower-specific, phytochrome-associated protein phosphatase 3 (.1) AT1G50370 362 / 6e-126 AtFYPP1 flower- specific, phytochrome-associated protein phosphatase 1, Calcineurin-like metallo-phosphoesterase superfamily protein (.1) AT2G29400 293 / 2e-98 PP1-AT, TOPP1 type one protein phosphatase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G062000 [exp] 649 / 0 AT3G58500 622 / 0.0 protein phosphatase 2A-4 (.1) Potri.003G217900 [exp] 611 / 0 AT2G42500 627 / 0.0 protein phosphatase 2A-3 (.1.2.3) Potri.001G007800 [exp] 609 / 0 AT2G42500 628 / 0.0 protein phosphatase 2A-3 (.1.2.3) Potri.015G068300 [exp] 534 / 0 AT1G10430 606 / 0.0 protein phosphatase 2A-2 (.1) Potri.012G073300 [exp] 533 / 0 AT1G10430 605 / 0.0 protein phosphatase 2A-2 (.1) Potri.010G039700 [exp] 526 / 0 AT1G10430 609 / 0.0 protein phosphatase 2A-2 (.1) Potri.008G191600 [exp] 525 / 0 AT1G10430 610 / 0.0 protein phosphatase 2A-2 (.1) Potri.011G092200 [exp] 424 / 2e-150 AT5G55260 613 / 0.0 PROTEIN PHOSPHATASE X -2, protein phosphatase X 2 (.1) Potri.001G358700 [exp] 424 / 3e-150 AT5G55260 609 / 0.0 PROTEIN PHOSPHATASE X -2, protein phosphatase X 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025174 [exp] 610 / 0 AT2G42500 619 / 0.0 protein phosphatase 2A-3 (.1.2.3) Lus10016053 [exp] 606 / 0 AT2G42500 610 / 0.0 protein phosphatase 2A-3 (.1.2.3) Lus10039185 [exp] 605 / 0 AT2G42500 624 / 0.0 protein phosphatase 2A-3 (.1.2.3) Lus10013754 [exp] 588 / 0 AT2G42500 601 / 0.0 protein phosphatase 2A-3 (.1.2.3) Lus10042160 [exp] 535 / 0 AT1G10430 611 / 0.0 protein phosphatase 2A-2 (.1) Lus10033122 [exp] 530 / 0 AT1G10430 606 / 0.0 protein phosphatase 2A-2 (.1) Lus10030810 [exp] 525 / 0 AT1G10430 617 / 0.0 protein phosphatase 2A-2 (.1) Lus10013287 [exp] 525 / 0 AT1G10430 617 / 0.0 protein phosphatase 2A-2 (.1) Lus10036657 [exp] 522 / 0 AT1G10430 598 / 0.0 protein phosphatase 2A-2 (.1) Lus10004252 [exp] 481 / 7e-167 AT1G69960 538 / 0.0 serine/threonine protein phosphatase 2A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0163 [poplar] [flax] Calcineurin PF00149 [poplar] [flax] Metallophos Calcineurin-like phosphoesterase
Representative CDS sequence Show only first row Show all	>Potri.006G196100.3 pacid=42768737 polypeptide=Potri.006G196100.3.p locus=Potri.006G196100 ID=Potri.006G196100.3.v4.1 annot-version=v4.1 ATGGGCACGAATTCGTTATCTTCAGAATCAATTACCGATCTTGATCAACAGATCGAGCAACTCATGCAGTGCAAGCCCCTCTCTGAACCTCAGGTTAGGA CATTATGCGAGAAAGCTAAGGAGATACTAATGCAGGAAAGCAATGTTCAGCCTGTGAAAAGCCCTGTGACAATATGTGGCGATATTCATGGGCAGTTTCA TGATCTTGCAGAACTTTTTCGTATTGGAGGGAAGTGTCCTGACACCAATTACTTGTTTATGGGGGATTATGTGGATCGTGGCTATTATTCTGTTGAAACC GTGACGCTCTTGGTGGCATTGAAAGTGCGCTATCATCATAGGATTACCATTCTCAGAGGAAACCATGAAAGTCGCCAGATTACTCAAGTTTATGGGTTTT ATGATGAATGTCTAAGAAAGTATGGTAATGCTAATGTTTGGAAGATCTTCACCGACCTTTTTGACTATTTCCCATTGACTGCATTGGTTGAGTCTGAAAT ATTTTGTTTACATGGTGGATTGTCCCCAACTATAGAGACTCTTGATAACATAAGAAACTTTGATCGTGTTCAAGAGGTTCCTCATGAAGGAGCCATGTGT GATCTGCTGTGGTCTGATCCAGATGACAGGTGTGGTTGGGGTATATCACCTCGTGGTGCCGGGTATACCTTTGGCCAGGATATATCTGAGCAATTTAATC ATGTGAACAGCTTGAAGTTGATTGCTAGAGCACATCAGCTTGTTATGGATGGATTTAATTGGGCACATGAACAAAAGGTGGTTACCATATTTAGTGCACC TAATTATTGTTACCGCTGTGGAAACATGGCCTCCATACTGGAAGTTGATGACTGCAAGGGCCACACATTCATCCAGTTTGAGCCAGCTCCCAGGAGGGGA GAACCTGATGTTACCCGTAGAACTCCTGATTACTTCCTGTAA
AA sequence Show only first row Show all	>Potri.006G196100.3 pacid=42768737 polypeptide=Potri.006G196100.3.p locus=Potri.006G196100 ID=Potri.006G196100.3.v4.1 annot-version=v4.1 MGTNSLSSESITDLDQQIEQLMQCKPLSEPQVRTLCEKAKEILMQESNVQPVKSPVTICGDIHGQFHDLAELFRIGGKCPDTNYLFMGDYVDRGYYSVET VTLLVALKVRYHHRITILRGNHESRQITQVYGFYDECLRKYGNANVWKIFTDLFDYFPLTALVESEIFCLHGGLSPTIETLDNIRNFDRVQEVPHEGAMC DLLWSDPDDRCGWGISPRGAGYTFGQDISEQFNHVNSLKLIARAHQLVMDGFNWAHEQKVVTIFSAPNYCYRCGNMASILEVDDCKGHTFIQFEPAPRRG EPDVTRRTPDYFL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G58500		PP2A-4, EP7, PP...	protein phosphatase 2A-4 (.1)		Potri.006G196100 [exp]	0	1
AT4G19950			unknown protein		Potri.007G105700 [exp]	2.44	0.8439	ORF.6
AT3G58500		PP2A-4, EP7, PP...	protein phosphatase 2A-4 (.1)		Potri.016G062000 [exp]	4.69	0.7834
AT1G62600			Flavin-binding monooxygenase f...		Potri.001G121100 [exp]	5.19	0.8396
AT4G18593			dual specificity protein phosp...		Potri.004G056600 [exp]	5.65	0.8418
AT4G13520		SMAP1	small acidic protein 1 (.1)		Potri.008G174000 [exp]	7.93	0.8165
AT1G68220			Protein of unknown function (D...		Potri.008G124100 [exp]	8.48	0.8048
AT1G31340		NEDD8, ATRUB1, ...	ARABIDOPSIS THALIANA RELATED T...		Potri.007G067500 [exp]	9.38	0.8346	Pt-UBQ7.1
AT3G51500			unknown protein		Potri.011G146400 [exp]	10.00	0.7884
AT3G52220			unknown protein		Potri.008G019100 [exp]	14.24	0.8225
AT5G10810		ATER	ARABIDOPSIS THALIANA ENHANCER ...		Potri.018G017300 [exp]	15.00	0.8292

Compare expression of checked genes

Potri.006G196100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.