Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06620 229 / 2e-75 SDG38, ATXR4 SET domain protein 38 (.1) AT2G19640 59 / 2e-10 SDG39, ASHR2 SET DOMAIN PROTEIN 39, ASH1-related 2, ASH1-related protein 2 (.1.2) AT3G21820 51 / 8e-08 SDG36, ATXR2 SET DOMAIN PROTEIN 36, histone-lysine N-methyltransferase ATXR2 (.1) AT2G17900 51 / 1e-07 ASHR1, SDG37 ASH1-related 1, SET domain group 37 (.1) AT1G26760 40 / 0.0003 SDG35, ATXR1 SET domain protein 35 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G038700 [exp] 56 / 2e-09 AT3G21820 645 / 0.0 SET DOMAIN PROTEIN 36, histone-lysine N-methyltransferase ATXR2 (.1) Potri.001G071700 [exp] 52 / 3e-08 AT2G19640 416 / 2e-144 SET DOMAIN PROTEIN 39, ASH1-related 2, ASH1-related protein 2 (.1.2) Potri.005G173100 [exp] 50 / 1e-07 AT2G17900 657 / 0.0 ASH1-related 1, SET domain group 37 (.1) Potri.008G089500 [exp] 44 / 3e-05 AT1G26760 646 / 0.0 SET domain protein 35 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013535 [exp] 271 / 5e-92 AT5G06620 367 / 2e-127 SET domain protein 38 (.1) Lus10029712 [exp] 54 / 8e-09 AT2G17900 615 / 0.0 ASH1-related 1, SET domain group 37 (.1) Lus10004628 [exp] 51 / 7e-08 AT2G19640 399 / 4e-138 SET DOMAIN PROTEIN 39, ASH1-related 2, ASH1-related protein 2 (.1.2) Lus10026687 [exp] 50 / 2e-07 AT2G19640 400 / 3e-138 SET DOMAIN PROTEIN 39, ASH1-related 2, ASH1-related protein 2 (.1.2) Lus10031573 [exp] 44 / 3e-05 AT3G21820 603 / 0.0 SET DOMAIN PROTEIN 36, histone-lysine N-methyltransferase ATXR2 (.1) Lus10037155 [exp] 42 / 0.0001 AT1G26760 573 / 0.0 SET domain protein 35 (.1) Lus10015102 [exp] 40 / 0.0005 AT3G21820 613 / 0.0 SET DOMAIN PROTEIN 36, histone-lysine N-methyltransferase ATXR2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00856 [poplar] [flax] SET SET domain
Representative CDS sequence Show only first row Show all	>Potri.006G196566.1 pacid=42769061 polypeptide=Potri.006G196566.1.p locus=Potri.006G196566 ID=Potri.006G196566.1.v4.1 annot-version=v4.1 ATGGTTATATCAGGAGCTGCATCCGCTGAAAGTCTTGACATACTTCAACCATCTAATTTATCTCATGAGATGGTTTTAGAGATGGAAGAGGGCTATGGTT TGCTGAAGAGTGGTTTTGCTATGGCAAATATTTCAGATGAACAGATGGCTTTCCTCACCAAGGAATGGTACAACAGCGTACTGGCACGAATTCGCATAAA TGCATTTCGTATTGAATTGGCAGTAGGATCATATGAGGATCTTCTATCATCAGCTGCAGCCTGTATAGAAGCTGAAGCTGCTGTTGGAAATGCTGTGTAC ATGCTTCCATCCTTATACAATCATGATTGTGATCCCAATGCACACATTGTATGGATAGACAATGCAGATGCACAGTTGAAGGCCCTTTGTGATGTTGAGG AAGATGAAGAGCTCCGGATCTGCTATATAGATGCAAGTATGGATCATGATGCTCGGCAATCTTTCTTGCTTCAAGGGTTTGGTTTCAAGTGCAATTGCCT TCGGTGTTTGTCAGGGGATTAA
AA sequence Show only first row Show all	>Potri.006G196566.1 pacid=42769061 polypeptide=Potri.006G196566.1.p locus=Potri.006G196566 ID=Potri.006G196566.1.v4.1 annot-version=v4.1 MVISGAASAESLDILQPSNLSHEMVLEMEEGYGLLKSGFAMANISDEQMAFLTKEWYNSVLARIRINAFRIELAVGSYEDLLSSAAACIEAEAAVGNAVY MLPSLYNHDCDPNAHIVWIDNADAQLKALCDVEEDEELRICYIDASMDHDARQSFLLQGFGFKCNCLRCLSGD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G06620		SDG38, ATXR4	SET domain protein 38 (.1)		Potri.006G196566 [exp]	0	1
AT2G36230		HISN3, APG10	ALBINO AND PALE GREEN 10, Aldo...		Potri.004G090500 [exp]	1.41	0.9302
AT1G03180			unknown protein		Potri.005G208700 [exp]	8.42	0.9332
AT4G23330			unknown protein		Potri.001G103800 [exp]	9.16	0.8511
AT4G15790			unknown protein		Potri.010G024600 [exp]	10.58	0.9053
AT1G07410		ATRAB-A2B, AtRA...	ARABIDOPSIS RAB GTPASE HOMOLOG...		Potri.010G197200 [exp]	14.42	0.8843
AT3G14740			RING/FYVE/PHD zinc finger supe...		Potri.011G103100 [exp]	14.73	0.9029
AT2G31690			alpha/beta-Hydrolases superfam...		Potri.014G150700 [exp]	15.00	0.9297
AT5G18920			Cox19-like CHCH family protein...		Potri.008G198500 [exp]	17.40	0.8371
AT4G14805			Bifunctional inhibitor/lipid-t...		Potri.010G085000 [exp]	17.66	0.9256
AT1G78620			Protein of unknown function DU...		Potri.001G384300 [exp]	18.27	0.7860

Compare expression of checked genes

Potri.006G196566 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.