Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11960 1679 / 0 Cleavage and polyadenylation specificity factor (CPSF) A subunit protein (.1), Cleavage and polyadenylation specificity factor (CPSF) A subunit protein (.2) AT3G55200 107 / 3e-23 AtSAP130a Arabidopsis thaliana spliceosome-associated protein 130 a, Cleavage and polyadenylation specificity factor (CPSF) A subunit protein (.1) AT3G55220 107 / 3e-23 AtSAP130b, SAP130b, AtSAP130ab Arabidopsis thaliana spliceosome-associated protein 130 b, Cleavage and polyadenylation specificity factor (CPSF) A subunit protein (.1) AT4G05420 86 / 2e-16 DDB1A damaged DNA binding protein 1A (.1.2) AT4G21100 84 / 5e-16 DDB1B damaged DNA binding protein 1B (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G212100 [exp] 86 / 1e-16 AT3G55200 2243 / 0.0 Arabidopsis thaliana spliceosome-associated protein 130 a, Cleavage and polyadenylation specificity factor (CPSF) A subunit protein (.1) Potri.008G048900 [exp] 84 / 5e-16 AT3G55200 2254 / 0.0 Arabidopsis thaliana spliceosome-associated protein 130 a, Cleavage and polyadenylation specificity factor (CPSF) A subunit protein (.1) Potri.001G357900 [exp] 83 / 1e-15 AT4G05420 1995 / 0.0 damaged DNA binding protein 1A (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017295 [exp] 1848 / 0 AT3G11960 1633 / 0.0 Cleavage and polyadenylation specificity factor (CPSF) A subunit protein (.1), Cleavage and polyadenylation specificity factor (CPSF) A subunit protein (.2) Lus10013542 [exp] 1843 / 0 AT3G11960 1640 / 0.0 Cleavage and polyadenylation specificity factor (CPSF) A subunit protein (.1), Cleavage and polyadenylation specificity factor (CPSF) A subunit protein (.2) Lus10040321 [exp] 86 / 1e-16 AT3G55220 2125 / 0.0 Arabidopsis thaliana spliceosome-associated protein 130 b, Cleavage and polyadenylation specificity factor (CPSF) A subunit protein (.1) Lus10023443 [exp] 86 / 2e-16 AT3G55220 2237 / 0.0 Arabidopsis thaliana spliceosome-associated protein 130 b, Cleavage and polyadenylation specificity factor (CPSF) A subunit protein (.1) Lus10033455 [exp] 86 / 3e-16 AT4G05420 1519 / 0.0 damaged DNA binding protein 1A (.1.2) Lus10020922 [exp] 78 / 4e-14 AT4G21100 1606 / 0.0 damaged DNA binding protein 1B (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF03178 [poplar] [flax] CPSF_A CPSF A subunit region CL0186 [poplar] [flax] PF10433 [poplar] [flax] MMS1_N Mono-functional DNA-alkylating methyl methanesulfonate N-term
Representative CDS sequence Show only first row Show all	>Potri.006G197200.3 pacid=42769759 polypeptide=Potri.006G197200.3.p locus=Potri.006G197200 ID=Potri.006G197200.3.v4.1 annot-version=v4.1 ATGGCAGTATCAGAGGAAGAGTGCTCTAATGCAAAGGTCAGATCATCATCATCACCATCTTCTTCTTCATCCTCTGCGCCATCTAACGGCGTTCACTACT TAGCTAAGTCCGTTCTGAGAGGCAGCGCTGTTTTACACGCTATTTACGGTCACTTCCGTTCTTCGTTCTCTTACGACATCGTTTTTGGCAAGGAGACGTC AATAGAGTTGGCGATAATAGGGGAAGATGGAATTGTACAGGCAATATGTGAACAACCTTTATTTGGCACGATTAAAGATATGGCTGTTGTACCTTGGAAT GACAAGTTCCATGCGCAGACTCCACGGGTGCAAGGAAAAGACCATTTGGTTGTTATATCTGATTCTGGGAAGCTTACATTTCTCACATTTTGCAATGAAA TGCACAGGTTTTTTCCGTTGACACACATTCAACTTTCGAATCCTGGAAACTCAAGACATCAACTTGGAAGAATGCTAGCCATAGATTCCAGTGGCTGTTT TGTCGCTACTAGCGCATATGAAGACCAATTGGCTTTGTTTTCCCTTTCAGCATCTGGTGGCAGTGAGATCATTGATGAGAGAATTCTTTATCCTCCTGAA AATGAAGGGAATGCAAATGTTGCCAGAAGTATCCAGAGACCACTCACATCTGGTACCATATGGAGTATGTGCTTCATTTCGAGGGATTCTAGCCATCCAA GTAAGGAGCATAATCCTGTACTAGCCATTATTCTAAATAGGAGGGGAGCGCTCCTAAATGAACTGCTGTTATTGAGATGGGACATTAGAGACCATGCTAT AAGCTATATTTCGCAGTTTGTTGAATCTGGACCGCTAGCGCATGACATCGTTGAAGTTCCTCATTCCAATGGATTTGCCCTTATGTTCAGGGTTGGTGAT GTTCTCCTAATGGATCTTAGAGATGCTCTCCACCCACGTTGTGTCTGTAGAACAAGCTTGAATTATTTTCCCAATGCAGTGGAGGAGCAGAATTTTGTTG AAGACAGTAGAGTTACTGATTTTGATGAAGATGGTTCATTCAATGTTGCTGCACGTGCTTTACTGGAGCTTCAAGATTATGATCCCATGTGTATTGATGG TGAAGGGAGCAATGTAAAATCAACTTTGAAACATGCATGCTCTTGGAGCTGGGAGCCAGATAATGATAAAAACCCTAGGATGGTTTTTTGTGCGGACACA GGAGAATTTTTCATGATTGAGATTTCTTATGACGGGGAAGATCTTAAAGTTAATCTTTCAGATTGTCTTTACAAAGACCTATCATGTAAGACACTTTTGT GGGTTGATGATGGATTCCTGGCAGCTCTTGTGGAGATGGGAGATGGGATTGTCCTGAAAATGGAAAATGAAAGCCTACAATATATAAGTCCTATTCAAAA TGTTGCACCCATCTTGGATATGTCCATCGTGGATTATCATGATGAGGAGCGTGATCAAATGTTTGCCTGCTGTGGGGTCGCACCTGAGGGGTCATTAAGG ATTATTAGAAGTGGTATCATTGTTGAAAAGCTACTGAAGACTGCCCCTATATATCAAGGCATTACTGGGACCTGGACTGTTGGAATGAAAGTAGCTGATT TGCATCATTCTTTTCTTGTTCTATCATTTGTTGAAGAGACTAGGGTACTCTCAGTTGGATTAAGTTTTACTGATGTGACGGATTTGGTTGGTTTTCAGCC TGATGTCTGTACTCTGGCATGTGGTCTGGTAGGTGATGGGTTGCTGGTCCAAATTCATCAAACTGCAGTTAGACTTTGTTTGCCTACCAGGGCTGCCCAT CCAGAAGGTATTCCTTTGTCTTCCCCAGTTTGCTCATCTTGGTTTCCAGCTAACATGGGTATCAATTTGGGGGCTGTTGGACATGACCTGATTGTTGTTT CTACTTCTAATCCTTGTTTCCTATATATTCTCGGGGTGAGATGTCTTTCACCATTTCATTACGAAATATTTGAAATGCAACATTTGAGATTGCTGAATGA GTTATCCTGCATCTCCATTCCTCAAAAATATTTTGAGCGAAGACGATCAAGTTTTATGAATCATGCGGTTGGTAGTTGTGCAGCTGCCCTTCCAGTTGGG GTTGACACTGGCAATACCTTTGTTATCGGGACGCATAAACCTTCAGTGGAAGTTGTGTCTTTTGTGCCTGGTGATGGCCTAAGAATTATTGCTTCTGGAA CAATATCATTAACAAGTTCTTTGGGAACCACTGTTAGTGGTTGCATCCCTCAAGATGTAAGGCTTGTACTGGCTGATCGGTTTTATGTTCTTTCTGGTTT AAGGAATGGAATGTTGCTTCGATTTGAATGGCCTTCTGCCTCTTCAATGTTTTCAGTGGAAATTCCCAGTCATGGATGTTCTATTGGTTCCTGTATGCTA AGTTCTGATACTGCTATATCAAATACAGCTGCAATTTCTTTAGAGCCAAAAATGCTTGCTGTCGATTCAATTGACAACACAATGGATGACCTTCCTATTA ATCTGCAATTGATTGCCACCCGTCGCATTGGCATTACTCCTGTTTTCCTGGTTCCTTTGAGTGATTCTCTTGACTCAGATATGATTGCTCTCAGTGATCG GCCATGGTTATTGCACGCTGCGAGGCACAGCCTCTCTTACACTTCAATCTCCTTTCAGCCTTCAACACATGCAACACCTGTATGCTCTGTTGAATGCCCG AAGGGAATTTTATTTGTTGCAGACAACAGTCTTCATTTGGTGGAAATGGTGCATAGCACGAGGCTTAATGTGCAGAAGTTTCATCTTGGAGGCACTCCAC GGAAGGTCCAGTACCATAGTGAAAGCAAGTTGTTACTTGTTATGAGGACTGAACTAAGCAATGACAATGATACATGTTCATCTGATATATGTTGTGTTGA CCCCCTGAGTGGTTCAACTGTGTCATCATTTAAACTTGAACGTGGAGAAACAGGAAAATCCATGGAGCTGGTGAAGATTGGAAATGAACAGGTTCTGGTA ATTGGAACCAGTCTGTCTTCTGGCCCAGCTATTATGCCTAGTGGTGAAGCCGAAAGTACCAAGGGCCGAGTAATAGTCCTCTGCCTAGAAAACTTGCAAA ATTCAGATAGTGGCTCAATGACATTCTGCTCAAAGGCAGGGTCATCTTCTCAACGAACATCACCATTTCGTGAAATTGTTGGTTATGCTGCTGAGCAGCT ATCAAGCAGTAGTCTTTGCAGTAGCCCAGATGATACTAGCTGCGATGGAGTCAAACTTGAAGAAACTGAAACATGGCAGTTGCGATTTGTTTCTGCCACA ACATTGCCTGGAATGGTGCTTGCGATTTGTCCATATCTTGACCGTTTTTTCTTGGCTTCTGCTGGTAATTCTTTTTATGTATGTGGTTTCGCAAATGATA ATAAAAGAGTGAAAAAGTTTGCTGTTGGAAGGACACGTTTTATGATAATGTCCTTGACTGCATATCACACCAGAATTGCTGTTGGTGATTGCCGCGATGG TATCCTTTTCTATGCTTATCATGTGGAGTCCAAAAAACTGGAGCAACTTTATTGTGACCCGTCTCAGAGATTAGTTGCTGGTTGTGTCCTTATGGATGTT GATACAGCAGTGGTTTCAGATCGGAAGGGAAGCATTGCTGTGTTGTCACGTTCTGATCGATTTGAGTGTACTGGAAGTCCAGAGTGCAACTTGACATTGA ATTGTGCTTATTATATGGGTGAGATAGCAATGAGCATCAGGAAGGGATCATTTACATATAAACTCCCTGCTGATGATATATTAACGGGGTGTGATGGTGT TATTACAAAGATGGATGCATCTAACAATACTATCGTGGCCAGCACACTCTTAGGAAGCATAATAGTTTTTATTCCTCTATCAAGGGAAGAATTTGAACTT CTACAAGCTGTCCAATCTAGACTTGTGGTCCATCCCTTAACTGCTCCTGTTTTAGGAAATGATCATCATGAGTTCCGAAGCCGTGAAAACCCTGTTGGAG TGCCCAAGATACTTGACGGCGACATGCTAGCTCAGTTCCTGGAGCTAACGAGTTCACAGCAAGAGGCAGTGTTATCATTACCTCTTGGACCACCAGATAC AATTAAAACAAATTTAAAACCATTTTCTACCTTGCCCATATCAATTAGTCAGGTTGTGCAACTTCTTGAGCGGGTTCATTATGCCCTCAATTAA
AA sequence Show only first row Show all	>Potri.006G197200.3 pacid=42769759 polypeptide=Potri.006G197200.3.p locus=Potri.006G197200 ID=Potri.006G197200.3.v4.1 annot-version=v4.1 MAVSEEECSNAKVRSSSSPSSSSSSAPSNGVHYLAKSVLRGSAVLHAIYGHFRSSFSYDIVFGKETSIELAIIGEDGIVQAICEQPLFGTIKDMAVVPWN DKFHAQTPRVQGKDHLVVISDSGKLTFLTFCNEMHRFFPLTHIQLSNPGNSRHQLGRMLAIDSSGCFVATSAYEDQLALFSLSASGGSEIIDERILYPPE NEGNANVARSIQRPLTSGTIWSMCFISRDSSHPSKEHNPVLAIILNRRGALLNELLLLRWDIRDHAISYISQFVESGPLAHDIVEVPHSNGFALMFRVGD VLLMDLRDALHPRCVCRTSLNYFPNAVEEQNFVEDSRVTDFDEDGSFNVAARALLELQDYDPMCIDGEGSNVKSTLKHACSWSWEPDNDKNPRMVFCADT GEFFMIEISYDGEDLKVNLSDCLYKDLSCKTLLWVDDGFLAALVEMGDGIVLKMENESLQYISPIQNVAPILDMSIVDYHDEERDQMFACCGVAPEGSLR IIRSGIIVEKLLKTAPIYQGITGTWTVGMKVADLHHSFLVLSFVEETRVLSVGLSFTDVTDLVGFQPDVCTLACGLVGDGLLVQIHQTAVRLCLPTRAAH PEGIPLSSPVCSSWFPANMGINLGAVGHDLIVVSTSNPCFLYILGVRCLSPFHYEIFEMQHLRLLNELSCISIPQKYFERRRSSFMNHAVGSCAAALPVG VDTGNTFVIGTHKPSVEVVSFVPGDGLRIIASGTISLTSSLGTTVSGCIPQDVRLVLADRFYVLSGLRNGMLLRFEWPSASSMFSVEIPSHGCSIGSCML SSDTAISNTAAISLEPKMLAVDSIDNTMDDLPINLQLIATRRIGITPVFLVPLSDSLDSDMIALSDRPWLLHAARHSLSYTSISFQPSTHATPVCSVECP KGILFVADNSLHLVEMVHSTRLNVQKFHLGGTPRKVQYHSESKLLLVMRTELSNDNDTCSSDICCVDPLSGSTVSSFKLERGETGKSMELVKIGNEQVLV IGTSLSSGPAIMPSGEAESTKGRVIVLCLENLQNSDSGSMTFCSKAGSSSQRTSPFREIVGYAAEQLSSSSLCSSPDDTSCDGVKLEETETWQLRFVSAT TLPGMVLAICPYLDRFFLASAGNSFYVCGFANDNKRVKKFAVGRTRFMIMSLTAYHTRIAVGDCRDGILFYAYHVESKKLEQLYCDPSQRLVAGCVLMDV DTAVVSDRKGSIAVLSRSDRFECTGSPECNLTLNCAYYMGEIAMSIRKGSFTYKLPADDILTGCDGVITKMDASNNTIVASTLLGSIIVFIPLSREEFEL LQAVQSRLVVHPLTAPVLGNDHHEFRSRENPVGVPKILDGDMLAQFLELTSSQQEAVLSLPLGPPDTIKTNLKPFSTLPISISQVVQLLERVHYALN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G11960			Cleavage and polyadenylation s...		Potri.006G197200 [exp]	0	1
AT3G12590			unknown protein		Potri.008G052700 [exp]	2.64	0.8541
AT5G64320			Pentatricopeptide repeat (PPR)...		Potri.013G002800 [exp]	2.82	0.8468
AT3G45630			RNA binding (RRM/RBD/RNP motif...		Potri.009G026200 [exp]	3.46	0.8234
AT3G27670		RST1	RESURRECTION1, ARM repeat supe...		Potri.001G346000 [exp]	4.24	0.8409
AT4G27220			NB-ARC domain-containing disea...		Potri.011G127300 [exp]	4.47	0.8442
AT5G19400		SMG7	Telomerase activating protein ...		Potri.001G275400 [exp]	6.24	0.8233
AT5G24350			unknown protein		Potri.015G008500 [exp]	7.00	0.8354
AT3G22430			unknown protein		Potri.008G024500 [exp]	7.41	0.8242
AT1G24300			GYF domain-containing protein ...		Potri.017G069220 [exp]	7.74	0.8525
AT1G09730			Cysteine proteinases superfami...		Potri.002G105700 [exp]	8.48	0.8321

Compare expression of checked genes

Potri.006G197200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.