Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11945 560 / 0 PDS2, ATHST PHYTOENE DESATURATION 2, homogentisate prenyltransferase (.1.2) AT2G18950 174 / 2e-50 ATHPT, VTE2, TPT1, HPT1 VITAMIN E 2, homogentisate phytyltransferase 1 (.1) AT3G51820 56 / 2e-08 PDE325, ATG4, G4, CHLG PIGMENT DEFECTIVE 325, UbiA prenyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G090700 [exp] 169 / 1e-48 AT2G18950 529 / 0.0 VITAMIN E 2, homogentisate phytyltransferase 1 (.1) Potri.018G022000 [exp] 165 / 1e-46 AT2G18950 369 / 2e-125 VITAMIN E 2, homogentisate phytyltransferase 1 (.1) Potri.006G166100 [exp] 135 / 5e-36 AT2G18950 379 / 2e-130 VITAMIN E 2, homogentisate phytyltransferase 1 (.1) Potri.006G102100 [exp] 55 / 4e-08 AT3G51820 547 / 0.0 PIGMENT DEFECTIVE 325, UbiA prenyltransferase family protein (.1) Potri.016G119400 [exp] 52 / 3e-07 AT3G51820 541 / 0.0 PIGMENT DEFECTIVE 325, UbiA prenyltransferase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016221 [exp] 570 / 0 AT3G11945 538 / 0.0 PHYTOENE DESATURATION 2, homogentisate prenyltransferase (.1.2) Lus10029321 [exp] 426 / 2e-148 AT3G11945 399 / 5e-138 PHYTOENE DESATURATION 2, homogentisate prenyltransferase (.1.2) Lus10006961 [exp] 163 / 5e-46 AT2G18950 519 / 0.0 VITAMIN E 2, homogentisate phytyltransferase 1 (.1) Lus10025472 [exp] 148 / 2e-40 AT2G18950 504 / 7e-179 VITAMIN E 2, homogentisate phytyltransferase 1 (.1) Lus10027815 [exp] 57 / 8e-09 AT3G51820 604 / 0.0 PIGMENT DEFECTIVE 325, UbiA prenyltransferase family protein (.1) Lus10002850 [exp] 50 / 2e-06 AT3G51820 518 / 0.0 PIGMENT DEFECTIVE 325, UbiA prenyltransferase family protein (.1) Lus10003379 [exp] 47 / 2e-05 AT3G51800 597 / 0.0 A. THALIANA ERBB-3 BINDING PROTEIN 1, metallopeptidase M24 family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0613 [poplar] [flax] Terp_synthase PF01040 [poplar] [flax] UbiA UbiA prenyltransferase family
Representative CDS sequence Show only first row Show all	>Potri.006G197600.1 pacid=42769646 polypeptide=Potri.006G197602.1.p locus=Potri.006G197600 ID=Potri.006G197600.1.v4.1 annot-version=v4.1 ATGGAGCTGTCATTTTCTCCTCCATCTTCTCTTGGAATTTCTGCTTTAAACACTCACCGCAACACCTCTTCTCATCAACCAAAGATACCCATTAAGCCCA CAAGCAAATCATTTGATTTATTCTTCAAAAGCTCTAAACCTTTTCCTTCAAGCACTGAAATTTACAGTCTCAAAAGAAGCTTAAAACTAGCACCGAACAG ACATTACAGGCGGAATCCCATCTGGGCCTGCAGTCAAGCTGGAGCAGCTGGATCTGATCCAATGTTAAACAAAATCTCAGATTTCAAAGATGCATGTTGG AGATTTTTAAGGCCTCACACCATACGCGGCACAGCTCTAGGTTCTACCGCTTTGGTGGCAAGAGCATTGATCGAGAACACAAATATGATTAAGTGGTCTC TGGTGTTAAAGGCATTCTCTGGTCTTTTTGCTCTAATATGTGGGAATGGTTATATAGTCGGCATCAATCAAATCTATGATATTGGAATAGACAAGGTTAA CAAACCTTATTTACCTATAGCTGCAGGAGATCTTTCAGTTCAATCTGCATGGTTGTTGGTGATATTTTTTGCAGTAGCTGGGGTCCTGATTGTAGGACTA AACTTTGGTCCATTCATCACTTCTCTTTACTGTCTTGGCCTTTTCTTAGGCACCATCTATTCAGTTCCTCCACTTCGATTCAAGAGATTTCCAGTCATAG CATTTCTTATAATTGCCACGGTACGGGGTTTTCTTCTCAATTTTGGCGTGTATCATGCAACCAGAGCCGCCCTCGGACTTCCTTTTGAATGGAGCTCACC CGTGGCATTCATTACAACCTTTGTCACATTGTTTGCACTGGTGATTGCCATAACAAAAGATCTTCCAGATGTGGAGGGGGATCGCAAATATAACATATCA ACTTTAGCAACTAAACTTGGAGTCAGAAACATTGCATTTCTTGGTTCTGGGCTTTTACTGGTGAATTATGTTGGAGCTGTACTAGCAGCTATTTACATGC CTCAGGATTTCAGTCGTAGCCTAATGATACCCGCACATACAATCCTTGCACTGAGCTTGGTTTTCCAGATGTGGGTGTTGGAACAAGCAAATTACACAAA GGAGGCAATCTCAGGGTTCTATCGGTTTATATGGAATCTCTTTTATGCTGAATACATCATATTTCCTTTTATCTAG
AA sequence Show only first row Show all	>Potri.006G197600.1 pacid=42769646 polypeptide=Potri.006G197602.1.p locus=Potri.006G197600 ID=Potri.006G197600.1.v4.1 annot-version=v4.1 MELSFSPPSSLGISALNTHRNTSSHQPKIPIKPTSKSFDLFFKSSKPFPSSTEIYSLKRSLKLAPNRHYRRNPIWACSQAGAAGSDPMLNKISDFKDACW RFLRPHTIRGTALGSTALVARALIENTNMIKWSLVLKAFSGLFALICGNGYIVGINQIYDIGIDKVNKPYLPIAAGDLSVQSAWLLVIFFAVAGVLIVGL NFGPFITSLYCLGLFLGTIYSVPPLRFKRFPVIAFLIIATVRGFLLNFGVYHATRAALGLPFEWSSPVAFITTFVTLFALVIAITKDLPDVEGDRKYNIS TLATKLGVRNIAFLGSGLLLVNYVGAVLAAIYMPQDFSRSLMIPAHTILALSLVFQMWVLEQANYTKEAISGFYRFIWNLFYAEYIIFPFI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G11945		PDS2, ATHST	PHYTOENE DESATURATION 2, homog...		Potri.006G197600 [exp]	0	1
AT2G35500		SKL2	shikimate kinase-like 2, shiki...		Potri.003G096600 [exp]	1.41	0.9687
AT3G62030		CYP20-3, ROC4	cyclophilin 20-3, rotamase CYP...		Potri.002G185200 [exp]	11.18	0.9523	ROC4.1
AT2G45770		FRD4, CPFTSY	FERRIC CHELATE REDUCTASE DEFEC...		Potri.014G078800 [exp]	12.96	0.9506	CPFTSY.1
AT4G17300		ATNS1, NS1, OVA...	ovule abortion 8, Class II ami...		Potri.007G129800 [exp]	15.90	0.9478
AT5G55220			trigger factor type chaperone ...		Potri.015G065900 [exp]	16.52	0.9506
AT4G35000		APX3	ascorbate peroxidase 3 (.1)		Potri.009G134100 [exp]	16.73	0.9398
AT3G63190		HFP108, AtcpRRF...	"ribosome recycling factor, ch...		Potri.002G052400 [exp]	17.49	0.9434	Pt-RRF.1
AT5G03940		SRP54CP, CPSRP5...	SIGNAL RECOGNITION PARTICLE 54...		Potri.006G211500 [exp]	19.39	0.9540	Pt-FFC.2
AT5G27290			unknown protein		Potri.013G029000 [exp]	21.90	0.9420
AT5G10690			pentatricopeptide (PPR) repeat...		Potri.006G273400 [exp]	22.97	0.9188

Compare expression of checked genes

Potri.006G197600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.