Plant FIBer expression Database

RPS5.2 (Potri.006G197700) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol RPS5.2
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G11940 358 / 1e-127 AML1, ATRPS5A ARABIDOPSIS MINUTE-LIKE 1, ribosomal protein 5A (.1.2)
AT2G37270 357 / 2e-127 ATRPS5B ribosomal protein 5B (.1.2)
ATCG00900 52 / 1e-08 ATCG00900.1, RPS7.1 CHLOROPLAST RIBOSOMAL PROTEIN S7, Ribosomal protein S7p/S5e family protein (.1)
ATCG01240 52 / 1e-08 ATCG01240.1, RPS7.2 ribosomal protein S7 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.016G063200
[exp]
382 / 6e-137 AT2G37270 359 / 4e-128 ribosomal protein 5B (.1.2)
Potri.013G138900
[exp]
51 / 4e-08 ATCG00900 310 / 2e-110 CHLOROPLAST RIBOSOMAL PROTEIN S7, Ribosomal protein S7p/S5e family protein (.1)
Potri.004G140500
[exp]
43 / 6e-05 ATCG00900 249 / 2e-85 CHLOROPLAST RIBOSOMAL PROTEIN S7, Ribosomal protein S7p/S5e family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10013381
[exp]
358 / 1e-127 AT2G37270 370 / 1e-132 ribosomal protein 5B (.1.2)
Lus10000946
[exp]
356 / 1e-126 AT2G37270 374 / 8e-134 ribosomal protein 5B (.1.2)
Lus10008436
[exp]
360 / 3e-126 AT3G11940 371 / 3e-130 ARABIDOPSIS MINUTE-LIKE 1, ribosomal protein 5A (.1.2)
Lus10004113
[exp]
323 / 3e-112 AT2G37270 339 / 1e-118 ribosomal protein 5B (.1.2)
Lus10002394
[exp]
51 / 9e-08 ATCG00900 229 / 3e-77 CHLOROPLAST RIBOSOMAL PROTEIN S7, Ribosomal protein S7p/S5e family protein (.1)
Lus10027894
[exp]
41 / 0.0003 ATCG00900 167 / 7e-53 CHLOROPLAST RIBOSOMAL PROTEIN S7, Ribosomal protein S7p/S5e family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF00177 Ribosomal_S7 Ribosomal protein S7p/S5e
Representative CDS sequence
>Potri.006G197700.1 pacid=42770538 polypeptide=Potri.006G197700.1.p locus=Potri.006G197700 ID=Potri.006G197700.1.v4.1 annot-version=v4.1
ATGGCAGAAGCAGCTGTGGTGGCTCCACCAAACCCGGAAGTTATTCAGCCACACCACGATGTCAAGCTCTTCAATCGCTGGACTTTCGAGGATATTACCG
TAAATGACATTTCTCTTGCTGACTATATTGGAGTCCAAGCTAAGCATGCTACATATGTCCCACACACAGCTGGGAGATACTCTGTCAAGCGTTTCAGGAA
GGCCCAATGCCCAATTGTTGAAAGGCTTACAAACTCACTGCAGATGCACGGCAGAAACAACGGAAAGAAACTGAAGGCTGTGACCATTATCAAACATGCT
ATGGAGATTATTCACCTTTTGACTGACCAGAACCCAGTCCAAGTTATTGTTGATGCTGTTGTCAACAGTGGGCCTCGTGAAGATGCTACTCGTATTGGCT
CAGCTGGTGTTGTCAGGCGTCAGGCTGTTGATATTTCACCTCTTAGACGTGTAAACCAAGCCTTGTATCTCCTTACCACTGGTGCTCGTGAGGCTGCTTT
TAGGAACATCAAGACCATAGCTGAATGCTTGGCTGATGAACTTATCAATGCAGCCAAGGGTTCCTCAAACAGCTATGCCATCAAGAAGAAGGATGAGATT
GAAAGAGTTGCCAAGGCCAACCGTTGA
AA sequence
>Potri.006G197700.1 pacid=42770538 polypeptide=Potri.006G197700.1.p locus=Potri.006G197700 ID=Potri.006G197700.1.v4.1 annot-version=v4.1
MAEAAVVAPPNPEVIQPHHDVKLFNRWTFEDITVNDISLADYIGVQAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLQMHGRNNGKKLKAVTIIKHA
MEIIHLLTDQNPVQVIVDAVVNSGPREDATRIGSAGVVRRQAVDISPLRRVNQALYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEI
ERVAKANR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G11940 AML1, ATRPS5A ARABIDOPSIS MINUTE-LIKE 1, rib... Potri.006G197700
[exp]
0 1 RPS5.2
AT5G61170 Ribosomal protein S19e family ... Potri.017G092200
[exp]
1.00 0.9778 Pt-RPS19.2
AT4G00100 PFL2, ATRPS13A POINTED FIRST LEAF 2, ribosoma... Potri.012G128600
[exp]
1.41 0.9727 Pt-RPS13.2
AT5G48760 Ribosomal protein L13 family p... Potri.001G314500
[exp]
2.00 0.9686 RPL13.1
AT4G16720 Ribosomal protein L23/L15e fam... Potri.013G106800
[exp]
3.16 0.9580 Pt-RPL15.2
AT5G02610 Ribosomal L29 family protein ... Potri.008G048800
[exp]
3.46 0.9687 RPL35.1
AT4G15000 Ribosomal L27e protein family ... Potri.006G021500
[exp]
3.74 0.9567 Pt-RPL27.2
AT1G57860 Translation protein SH3-like f... Potri.016G061100
[exp]
4.00 0.9609
AT3G16080 Zinc-binding ribosomal protein... Potri.003G053100
[exp]
4.24 0.9662 RPL37.2
AT4G39200 Ribosomal protein S25 family p... Potri.010G239300
[exp]
5.91 0.9393
AT3G52580 Ribosomal protein S11 family p... Potri.009G019400
[exp]
5.91 0.9645

Potri.006G197700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.