Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G58460 560 / 0 ATRBL15 RHOMBOID-like protein 15 (.1.2) AT3G17611 81 / 1e-16 ATRBL14 RHOMBOID-like protein 14 (.1.2.3) AT3G59520 58 / 3e-09 ATRBL13 RHOMBOID-like protein 13 (.1) AT2G29050 45 / 6e-05 ATRBL1 RHOMBOID-like 1 (.1.2) AT3G56740 44 / 0.0001 Ubiquitin-associated (UBA) protein (.1) AT2G41160 42 / 0.0004 Ubiquitin-associated (UBA) protein (.1) AT1G63120 42 / 0.0007 ATRBL2 RHOMBOID-like 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G004600 [exp] 70 / 5e-13 AT3G17611 352 / 4e-121 RHOMBOID-like protein 14 (.1.2.3) Potri.017G027800 [exp] 59 / 2e-09 AT3G59520 434 / 1e-155 RHOMBOID-like protein 13 (.1) Potri.007G130300 [exp] 57 / 8e-09 AT3G59520 441 / 1e-158 RHOMBOID-like protein 13 (.1) Potri.012G139600 [exp] 45 / 5e-05 AT5G07250 324 / 6e-110 RHOMBOID-like protein 3 (.1.2) Potri.015G142000 [exp] 45 / 5e-05 AT5G07250 294 / 2e-98 RHOMBOID-like protein 3 (.1.2) Potri.006G086300 [exp] 44 / 0.0002 AT2G29050 422 / 6e-147 RHOMBOID-like 1 (.1.2) Potri.006G040100 [exp] 43 / 0.0002 AT3G56740 432 / 3e-154 Ubiquitin-associated (UBA) protein (.1) Potri.016G035800 [exp] 43 / 0.0002 AT3G56740 380 / 7e-134 Ubiquitin-associated (UBA) protein (.1) Potri.009G031900 [exp] 42 / 0.0004 AT2G29050 434 / 7e-152 RHOMBOID-like 1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017221 [exp] 593 / 0 AT1G03475 557 / 0.0 LESION INITIATION 2, Coproporphyrinogen III oxidase (.1) Lus10021092 [exp] 558 / 0 AT3G58460 535 / 0.0 RHOMBOID-like protein 15 (.1.2) Lus10014591 [exp] 82 / 2e-16 AT2G04160 716 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Lus10032095 [exp] 77 / 3e-15 AT3G17611 339 / 2e-116 RHOMBOID-like protein 14 (.1.2.3) Lus10008156 [exp] 59 / 1e-09 AT3G59520 447 / 8e-161 RHOMBOID-like protein 13 (.1) Lus10027436 [exp] 46 / 4e-05 AT5G07250 392 / 1e-135 RHOMBOID-like protein 3 (.1.2) Lus10023789 [exp] 45 / 9e-05 AT2G29050 488 / 3e-173 RHOMBOID-like 1 (.1.2) Lus10003971 [exp] 44 / 0.0002 AT5G02270 530 / 0.0 ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 9, ATP-binding cassette I20, non-intrinsic ABC protein 9 (.1.2) Lus10027269 [exp] 44 / 0.0002 AT3G56740 420 / 2e-149 Ubiquitin-associated (UBA) protein (.1) Lus10038976 [exp] 44 / 0.0002 AT3G56740 421 / 1e-149 Ubiquitin-associated (UBA) protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0214 [poplar] [flax] UBA PF00627 [poplar] [flax] UBA UBA/TS-N domain CL0207 [poplar] [flax] Rhomboid-like PF01694 [poplar] [flax] Rhomboid Rhomboid family
Representative CDS sequence Show only first row Show all	>Potri.006G197900.2 pacid=42770125 polypeptide=Potri.006G197900.2.p locus=Potri.006G197900 ID=Potri.006G197900.2.v4.1 annot-version=v4.1 ATGAGACCTAACATTGTCACTGAGGCGGGACTGCAAACGAGAGTGGGACAATGGTGGGAAAGCATTCCATTCCTTACTTCTGCGGTTGTGGTTGTTTGTG GCGTTATATACTTGGTCTGCCTCCTGATTGGATACGACTCGTTTTACGAAATATGTTTCTTGCCAACTGCTGTTGTATCCCATTTTCAGGTTTACAGGAT TTATACCTCAATATTTTTTCATGGTTCGCTCCTTCATGTTCTGTTCAACATGCTGGCTCTTGTACCTCTGGGTTCTGAACTGGAGAGAATCATGGGATCT ATCCGCTTGGCGTACCTGATAATTTTGTTGGCCACTACCAATGCAATATTTCATCTTTTTATTGCATTGTTGGTGGCCCACAATCCGTTTCACCCATACC AGTATCTTTTGGATGAGTGTGCAATAGGCTTCTCTGGAATTTTATTTTCTATGATCGTTATAGAGACGAGCTTGAGTGGAGTGCAGTCTAGGAGTGTGTT TGGTCTCTTCAACGTTCCCGCTAAGTGGTATGCATTTATCTTACTGGTAGCATTCCAGCTTCTTATGACGAATGTGTCTTTACTCGGACACCTATGCGGC ATTTTGTCCGGATTTGCATATACCTATGGGTTATTCAACTTTCTTATGCCAGGAGCGTCCTCCTTTTCTGCTATTGAGGCCTCCTCTTGGCTTTCCTCCT GCGTGAGGAGACCTAAATTTATTTTGTGCACTGGCGGTAGTCCCACAAGCTACATCCCGACACATTCAGGCCAAAACACTACCTCCAGTGGACTATTATC TGGAAATATTTGGAGAAATTTATCTTCATGGATGCCACAGAGGGAAACATCTGCTCAGGCTGGGCAAGACTATAGGTTCCCTGGAAGTGGAAGGGCTCTT GGTTCTGGCCAAAGTGAAACAGTGCCTGCTGTGAATTCAGATTCAAACCTGCAGGCTAGACTCTTGGATAACAGCAACCCAAACCGTTCCTCACATTTGG GGGTAACTGCTACAAGAGAGCCACCATTAGATGGAAGGAGGTCAGTGGTAGATAATGCTGTTGGTCCAACTCCAGTACACCCTGCACTCCATCAGGATTC AGCTCCTTCCGAGGAGCAAATCCAAAAATTAGTATCTATGGGTTTTGACAAGACACAGGTAGAAGTTGCAATTTCAGCTGCTGATGGAGATCTTAACGTA GCAGTTGAAATTCTTATGAGCCAGCAGGGATAA
AA sequence Show only first row Show all	>Potri.006G197900.2 pacid=42770125 polypeptide=Potri.006G197900.2.p locus=Potri.006G197900 ID=Potri.006G197900.2.v4.1 annot-version=v4.1 MRPNIVTEAGLQTRVGQWWESIPFLTSAVVVVCGVIYLVCLLIGYDSFYEICFLPTAVVSHFQVYRIYTSIFFHGSLLHVLFNMLALVPLGSELERIMGS IRLAYLIILLATTNAIFHLFIALLVAHNPFHPYQYLLDECAIGFSGILFSMIVIETSLSGVQSRSVFGLFNVPAKWYAFILLVAFQLLMTNVSLLGHLCG ILSGFAYTYGLFNFLMPGASSFSAIEASSWLSSCVRRPKFILCTGGSPTSYIPTHSGQNTTSSGLLSGNIWRNLSSWMPQRETSAQAGQDYRFPGSGRAL GSGQSETVPAVNSDSNLQARLLDNSNPNRSSHLGVTATREPPLDGRRSVVDNAVGPTPVHPALHQDSAPSEEQIQKLVSMGFDKTQVEVAISAADGDLNV AVEILMSQQG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G58460		ATRBL15	RHOMBOID-like protein 15 (.1.2...		Potri.006G197900 [exp]	0	1
AT1G48880		TBL7	TRICHOME BIREFRINGENCE-LIKE 7 ...		Potri.002G071900 [exp]	1.41	0.9409
AT4G15830			ARM repeat superfamily protein...		Potri.008G221900 [exp]	2.44	0.9290
AT1G09430		ACLA-3	ATP-citrate lyase A-3 (.1)		Potri.005G004900 [exp]	2.82	0.9328
AT2G32980			unknown protein		Potri.014G158000 [exp]	3.00	0.9448
AT1G60430		ARPC3	actin-related protein C3 (.1.2...		Potri.006G063400 [exp]	6.08	0.9019
AT1G75840		ATROP4, ATGP3, ...	RHO-LIKE GTP BINDING PROTEIN 4...		Potri.019G092300 [exp]	6.32	0.9247
AT5G37680		ATARLA1A	ADP-ribosylation factor-like A...		Potri.004G086200 [exp]	6.55	0.8979
AT2G45530			RING/U-box superfamily protein...		Potri.011G149200 [exp]	8.06	0.9295
AT4G15830			ARM repeat superfamily protein...		Potri.010G014200 [exp]	9.48	0.9378
					Potri.011G057400 [exp]	10.39	0.9226

Compare expression of checked genes

Potri.006G197900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.