Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38110 527 / 0 ATGPAT6, GPAT6 glycerol-3-phosphate acyltransferase 6 (.1) AT1G01610 517 / 0 ATGPAT4, GPAT4 glycerol-3-phosphate acyltransferase 4 (.1) AT4G00400 516 / 0 AtGPAT8, GPAT8 glycerol-3-phosphate acyltransferase 8 (.1) AT3G11430 508 / 2e-177 ATGPAT5, GPAT5 glycerol-3-phosphate acyltransferase 5 (.1) AT5G06090 498 / 2e-173 ATGPAT7, GPAT7 glycerol-3-phosphate acyltransferase 7 (.1) AT1G06520 412 / 1e-138 ATGPAT1, GPAT1 glycerol-3-phosphate acyltransferase 1 (.1) AT1G02390 333 / 9e-109 ATGPAT2, GPAT2 ARABIDOPSIS THALIANA GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 2, glycerol-3-phosphate acyltransferase 2 (.1) AT4G01950 329 / 3e-107 ATGPAT3, GPAT3 glycerol-3-phosphate acyltransferase 3 (.1) AT3G11325 284 / 2e-91 Phospholipid/glycerol acyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G063900 [exp] 947 / 0 AT2G38110 533 / 0.0 glycerol-3-phosphate acyltransferase 6 (.1) Potri.016G113100 [exp] 596 / 0 AT2G38110 789 / 0.0 glycerol-3-phosphate acyltransferase 6 (.1) Potri.006G097800 [exp] 590 / 0 AT2G38110 809 / 0.0 glycerol-3-phosphate acyltransferase 6 (.1) Potri.014G085500 [exp] 509 / 4e-178 AT4G00400 757 / 0.0 glycerol-3-phosphate acyltransferase 8 (.1) Potri.010G201200 [exp] 503 / 9e-176 AT3G11430 720 / 0.0 glycerol-3-phosphate acyltransferase 5 (.1) Potri.008G058200 [exp] 493 / 7e-172 AT5G06090 704 / 0.0 glycerol-3-phosphate acyltransferase 7 (.1) Potri.005G202200 [exp] 474 / 2e-163 AT1G06520 650 / 0.0 glycerol-3-phosphate acyltransferase 1 (.1) Potri.002G192600 [exp] 372 / 9e-124 AT4G01950 601 / 0.0 glycerol-3-phosphate acyltransferase 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036684 [exp] 786 / 0 AT2G38110 558 / 0.0 glycerol-3-phosphate acyltransferase 6 (.1) Lus10010741 [exp] 779 / 0 AT2G38110 555 / 0.0 glycerol-3-phosphate acyltransferase 6 (.1) Lus10002500 [exp] 553 / 0 AT2G38110 683 / 0.0 glycerol-3-phosphate acyltransferase 6 (.1) Lus10004711 [exp] 493 / 1e-171 AT3G11430 743 / 0.0 glycerol-3-phosphate acyltransferase 5 (.1) Lus10017794 [exp] 443 / 9e-153 AT3G11430 392 / 5e-133 glycerol-3-phosphate acyltransferase 5 (.1) Lus10018832 [exp] 440 / 9e-152 AT3G11430 390 / 3e-132 glycerol-3-phosphate acyltransferase 5 (.1) Lus10010934 [exp] 431 / 2e-146 AT1G06520 605 / 0.0 glycerol-3-phosphate acyltransferase 1 (.1) Lus10004833 [exp] 421 / 3e-144 AT2G38110 512 / 3e-180 glycerol-3-phosphate acyltransferase 6 (.1) Lus10020767 [exp] 419 / 2e-142 AT1G06520 569 / 0.0 glycerol-3-phosphate acyltransferase 1 (.1) Lus10031396 [exp] 416 / 2e-140 AT1G06520 595 / 0.0 glycerol-3-phosphate acyltransferase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0228 [poplar] [flax] Acyltransferase PF01553 [poplar] [flax] Acyltransferase Acyltransferase CL0137 [poplar] [flax] HAD PF12710 [poplar] [flax] HAD haloacid dehalogenase-like hydrolase
Representative CDS sequence Show only first row Show all	>Potri.006G198100.1 pacid=42768104 polypeptide=Potri.006G198100.1.p locus=Potri.006G198100 ID=Potri.006G198100.1.v4.1 annot-version=v4.1 ATGGTTAGCTTCCCAACTGTTGACAAATGTGCATCCATCGGCAGAGAAAAGCACAGTGTAGTTGCTGACATGGATGGGACCTTGCTTAGAGGCCGTAGCT CATTCCCTTACTTTGCTCTACTTGCCTTCGAAGCTGGTGGGATTTTTAGGCTGCTTTTCTTGCTCTTGAACTCACCACTAGCAGGACTTCTGTATTACTT TGTGTCCGAGTCTGCTGGTATTAAAGTTCTTATCTTTGCTACATGTGCCGGAATGAAGTTATCAGATATCGAGTCTGTAGCACGTGCTGTGCTGCCAAAG TTTTACTCTAGTGACCTTCATTCTGAGTCGTGGCGTGTGTTCTCTTCTTGCGGAAAACGTTGCGTTCTTACTGCAAATCCAAGAATTATGGTGGAAGCAT TTTTGAAAGATTTCTTGGGAGCTGATTTGGTTTTGGGGACTGAGATATTAACTTATAAAGGTAGAGCAACAGGGTTTGTTCAGAGCCCGGGAGTACTTGT GGGGAAGAACAAGGCAGATGCGCTTAAAAAGGCTTTTGGGATGACACAACCAGAGATTGGACTTGGAGATCGTCATACAGATGCACCCTTCATGGCTCTA TGCAAGGAGGGCTACATAGTGCCACCTAAGCCAGAGGTTGAAGCTGTAACTACTGACAAGCTCCCAAAACCAGTCATCTTCCATGATGGCCGGCTAGTCC AAAAACCAACACCATTATCAGCACTACTCATAATTCTCTGGATCCCTATAGGCTTCATTTTAGCCTGCTTGAGGATTGCAGCAGGGTCACTCCTGCCTAT GCCAATGGTCTACTATGCTTTCTGGGCACTTGGTGTCCGTGTCACCATAAAGGGAACCCCACCTCCCCCAGCCAAAAAATCAATTGGTCAATCTGGTGTC CTCTTTGTTTGCTCACACAGAACCTTGCTTGATCCCATATTTCTCTCCACTGCCCTTGGGCGCCCTATTCCAGCAGTTACATACTCACTTTCTCGTCTCT CTGAAATTATCTCACCAATCAAAACTGTTAGACTCAGCCGTGACCGAGCTGCAGACGCATCAATGATCAAGAAGTTATTAGAAGAAGGTGACCTAGCTAT ATGTCCCGAGGGAACTACTTGCCGCGAACCGTTTCTTTTAAGGTTCTCGGCTTTGTTTGCTGAATTAACAGACGAACTCGTTCCAGTGGCTATGGCGAAT CGCATGAGTATGTTTCACGGAACCACTGCAAGAGGCTGGAAAGGGATGGATCCATTTTACTTCTTCATGAACCCTAGCCCAGCATATGAAGTAACTTTCC TGAACAAGTTGCCACTAGAGCTAACATTAAGTGGTGGGAAATCTAGCCATGAGGTGGCAAACTACATACAAAGAGTGATTGCTGCTACTCTCTCCTATGA ATGCACTTCCTTTACTAGGAGAGACAAGTACAGGGCACTTGCTGGGAATGATGGGAATGTGGTTGAAAAGACGAAGGTCCAAGCCAACAAAGTAATGGGG TGTTAA
AA sequence Show only first row Show all	>Potri.006G198100.1 pacid=42768104 polypeptide=Potri.006G198100.1.p locus=Potri.006G198100 ID=Potri.006G198100.1.v4.1 annot-version=v4.1 MVSFPTVDKCASIGREKHSVVADMDGTLLRGRSSFPYFALLAFEAGGIFRLLFLLLNSPLAGLLYYFVSESAGIKVLIFATCAGMKLSDIESVARAVLPK FYSSDLHSESWRVFSSCGKRCVLTANPRIMVEAFLKDFLGADLVLGTEILTYKGRATGFVQSPGVLVGKNKADALKKAFGMTQPEIGLGDRHTDAPFMAL CKEGYIVPPKPEVEAVTTDKLPKPVIFHDGRLVQKPTPLSALLIILWIPIGFILACLRIAAGSLLPMPMVYYAFWALGVRVTIKGTPPPPAKKSIGQSGV LFVCSHRTLLDPIFLSTALGRPIPAVTYSLSRLSEIISPIKTVRLSRDRAADASMIKKLLEEGDLAICPEGTTCREPFLLRFSALFAELTDELVPVAMAN RMSMFHGTTARGWKGMDPFYFFMNPSPAYEVTFLNKLPLELTLSGGKSSHEVANYIQRVIAATLSYECTSFTRRDKYRALAGNDGNVVEKTKVQANKVMG C

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G38110		ATGPAT6, GPAT6	glycerol-3-phosphate acyltrans...		Potri.006G198100 [exp]	0	1
AT1G54630		ACP3	acyl carrier protein 3 (.1.2)		Potri.006G217800 [exp]	2.44	0.9975
					Potri.003G126200 [exp]	6.00	0.9966
					Potri.014G082000 [exp]	7.48	0.9962
AT1G59740			Major facilitator superfamily ...		Potri.004G064100 [exp]	9.32	0.9962
AT3G08680			Leucine-rich repeat protein ki...		Potri.011G088000 [exp]	10.24	0.9959
					Potri.002G158600 [exp]	10.67	0.9956
					Potri.005G224300 [exp]	11.83	0.9952
AT5G20150		ATSPX1	ARABIDOPSIS THALIANA SPX DOMA...		Potri.001G193200 [exp]	12.44	0.9687
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Potri.005G216000 [exp]	12.64	0.9956	3
AT3G17675			Cupredoxin superfamily protein...		Potri.013G061300 [exp]	14.38	0.9952

Compare expression of checked genes

Potri.006G198100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.