Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38920 390 / 2e-136 SPX (SYG1/Pho81/XPR1) domain-containing protein / zinc finger (C3HC4-type RING finger) protein-related AT1G02860 256 / 2e-83 BAH1, NLA nitrogen limitation adaptation, BENZOIC ACID HYPERSENSITIVE 1, SPX (SYG1/Pho81/XPR1) domain-containing protein (.1), SPX (SYG1/Pho81/XPR1) domain-containing protein (.2) AT3G27330 49 / 3e-06 zinc finger (C3HC4-type RING finger) family protein (.1) AT4G03510 44 / 5e-05 ATRMA1, RMA1 RING membrane-anchor 1 (.1.2) AT1G18660 44 / 0.0001 zinc finger (C3HC4-type RING finger) family protein (.1), zinc finger (C3HC4-type RING finger) family protein (.2), zinc finger (C3HC4-type RING finger) family protein (.3), zinc finger (C3HC4-type RING finger) family protein (.4) AT3G24800 41 / 0.0007 PRT1 proteolysis 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G064600 [exp] 586 / 0 AT2G38920 414 / 2e-145 SPX (SYG1/Pho81/XPR1) domain-containing protein / zinc finger (C3HC4-type RING finger) protein-related Potri.014G130300 [exp] 253 / 1e-82 AT1G02860 448 / 3e-159 nitrogen limitation adaptation, BENZOIC ACID HYPERSENSITIVE 1, SPX (SYG1/Pho81/XPR1) domain-containing protein (.1), SPX (SYG1/Pho81/XPR1) domain-containing protein (.2) Potri.002G205400 [exp] 251 / 7e-82 AT1G02860 437 / 5e-155 nitrogen limitation adaptation, BENZOIC ACID HYPERSENSITIVE 1, SPX (SYG1/Pho81/XPR1) domain-containing protein (.1), SPX (SYG1/Pho81/XPR1) domain-containing protein (.2) Potri.001G336832 [exp] 50 / 1e-06 AT3G27330 235 / 2e-69 zinc finger (C3HC4-type RING finger) family protein (.1) Potri.012G068100 [exp] 41 / 0.0008 AT1G18660 679 / 0.0 zinc finger (C3HC4-type RING finger) family protein (.1), zinc finger (C3HC4-type RING finger) family protein (.2), zinc finger (C3HC4-type RING finger) family protein (.3), zinc finger (C3HC4-type RING finger) family protein (.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012290 [exp] 501 / 4e-180 AT2G38920 392 / 5e-137 SPX (SYG1/Pho81/XPR1) domain-containing protein / zinc finger (C3HC4-type RING finger) protein-related Lus10015986 [exp] 501 / 6e-180 AT2G38920 389 / 1e-135 SPX (SYG1/Pho81/XPR1) domain-containing protein / zinc finger (C3HC4-type RING finger) protein-related Lus10030375 [exp] 233 / 2e-74 AT1G02860 386 / 1e-134 nitrogen limitation adaptation, BENZOIC ACID HYPERSENSITIVE 1, SPX (SYG1/Pho81/XPR1) domain-containing protein (.1), SPX (SYG1/Pho81/XPR1) domain-containing protein (.2) Lus10007867 [exp] 130 / 9e-37 AT1G02860 199 / 3e-64 nitrogen limitation adaptation, BENZOIC ACID HYPERSENSITIVE 1, SPX (SYG1/Pho81/XPR1) domain-containing protein (.1), SPX (SYG1/Pho81/XPR1) domain-containing protein (.2) Lus10032119 [exp] 48 / 5e-06 AT3G27330 251 / 1e-75 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10022324 [exp] 48 / 7e-06 AT3G27330 251 / 4e-75 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10022569 [exp] 41 / 0.0005 AT3G07200 81 / 3e-19 RING/U-box superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF13639 [poplar] [flax] zf-RING_2 Ring finger domain
Representative CDS sequence Show only first row Show all	>Potri.006G198600.2 pacid=42770654 polypeptide=Potri.006G198600.2.p locus=Potri.006G198600 ID=Potri.006G198600.2.v4.1 annot-version=v4.1 ATGAAGTTTGGAGACACGTTCATGCAGTATTTGCAAGGAGATCAAACAGGGAATTTGGTTAAATGTGCTCATGTTGAGTACAAAAGACTCAATGAAGTCT TAAAAAACTGCAGAAGCCAAGGTTCCGCATCCGCTTCTTGCAAAAACGAGCAGCAAAAGGACGAAGGAAATAATGAATTGAGTTCCGGGTTGTCTCAATT CTGCCATTGTGAATCTTGCCCTTTGTGCGATCAAATTTTCTTTTCAGAATTGATGAGGGAAGCTTCACATATAGCTGGATGCTTTAGTTCTAGAGTTAGA CATCTCCTCCATCTTCATGTTGCCAGGGGAATACAAAGATACAAACTGCGTCTACGTCAATGTTTCAAAAACGATCAGCAGACCATGGCTGAAGAAGGGC GTATGCTGATTGAATATGTTACCATGAACACAATTGCTATTCGTAAAATTCTAAAGAAATACGATAAAGTGCATTGCTCTGTTAATGGGAACAATTTCAA ATCCAAGATGCAGGCTGAACATATAGAGCTTTTGCAATCGCCTTGGCTGATAGAGTTGGGAGCCTTTTATTTGAATTTTGATGGAATAGATGGAGGAGAG TTTAGTGAGTTTTGCAGTCAGTTTTCCTGTGATCTCAATGGTATAGAACCTGTTATGACACTGACACTTCCAAACTCTACGAAAGTAGAATACAGTCTGA CATGTGCCATTTGCTTGGAGACAGTTTTTAATCCGTATGCTTTGAGTTGTGGTCATCTTTTCTGCAAGTTGTGTGCTTGCTCAGCTGCTTTTGTGCTGAT GTTTGAAGGCCTTAAAACTGCAAGTTCAAATGCAAAGTGCCCCATCTGTAGAGAGGCCGGAGTATACACTAATGCAGTGCACATGTTGGAACTTGATCTG CTACTGAAAAGAAGGTGCAATGAGTACTGGAAGGAGAGGATGGCTGCTGAACATGCTGAGGACGAAAAACAAACCAGGGAGTATTGGGATTCACGGACCA AATATGCCATTGGGTACTGA
AA sequence Show only first row Show all	>Potri.006G198600.2 pacid=42770654 polypeptide=Potri.006G198600.2.p locus=Potri.006G198600 ID=Potri.006G198600.2.v4.1 annot-version=v4.1 MKFGDTFMQYLQGDQTGNLVKCAHVEYKRLNEVLKNCRSQGSASASCKNEQQKDEGNNELSSGLSQFCHCESCPLCDQIFFSELMREASHIAGCFSSRVR HLLHLHVARGIQRYKLRLRQCFKNDQQTMAEEGRMLIEYVTMNTIAIRKILKKYDKVHCSVNGNNFKSKMQAEHIELLQSPWLIELGAFYLNFDGIDGGE FSEFCSQFSCDLNGIEPVMTLTLPNSTKVEYSLTCAICLETVFNPYALSCGHLFCKLCACSAAFVLMFEGLKTASSNAKCPICREAGVYTNAVHMLELDL LLKRRCNEYWKERMAAEHAEDEKQTREYWDSRTKYAIGY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G38920			SPX (SYG1/Pho81/XPR1) domain-c...		Potri.006G198600 [exp]	0	1
AT4G03420			Protein of unknown function (D...		Potri.013G144000 [exp]	2.44	0.8084
AT2G44410			RING/U-box superfamily protein...		Potri.001G229600 [exp]	6.92	0.7996
AT3G16910		AAE7, ACN1	ACETATE NON-UTILIZING 1, acyl-...		Potri.008G108000 [exp]	7.00	0.8177
AT3G12360		ITN1	INCREASED TOLERANCE TO NACL, A...		Potri.008G048400 [exp]	7.48	0.7770
AT3G07870			F-box and associated interacti...		Potri.014G162600 [exp]	12.48	0.7816
AT4G24220		5[beta]-StR, 5[...	VEIN PATTERNING 1, Δ4,5-s...		Potri.014G019600 [exp]	14.07	0.7795
AT5G60790		ABCF1, ATGCN1	ARABIDOPSIS THALIANA GENERAL C...		Potri.009G007800 [exp]	17.29	0.7621	Pt-PNATH.1
AT3G01170			Ribosomal protein L34e superfa...		Potri.017G084500 [exp]	18.84	0.7815
AT4G27020			unknown protein		Potri.011G137700 [exp]	22.27	0.7748
AT2G24360			Protein kinase superfamily pro...		Potri.018G001900 [exp]	23.87	0.7519

Compare expression of checked genes

Potri.006G198600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.