Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06570 372 / 2e-129 alpha/beta-Hydrolases superfamily protein (.1.2) AT5G16080 189 / 2e-57 ATCXE17 carboxyesterase 17 (.1) AT5G62180 162 / 3e-47 ATCXE20 carboxyesterase 20 (.1) AT1G68620 159 / 5e-46 alpha/beta-Hydrolases superfamily protein (.1) AT2G45600 156 / 5e-45 alpha/beta-Hydrolases superfamily protein (.1) AT3G63010 155 / 2e-44 ATGID1B, GID1B GA INSENSITIVE DWARF1B, alpha/beta-Hydrolases superfamily protein (.1) AT1G47480 154 / 3e-44 alpha/beta-Hydrolases superfamily protein (.1) AT5G27320 149 / 5e-42 ATGID1C, GID1C GA INSENSITIVE DWARF1C, alpha/beta-Hydrolases superfamily protein (.1) AT3G05120 148 / 7e-42 ATGID1A, GID1A GA INSENSITIVE DWARF1A, alpha/beta-Hydrolases superfamily protein (.1) AT1G19190 147 / 1e-41 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G065000 [exp] 622 / 0 AT5G06570 376 / 7e-131 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.009G155800 [exp] 402 / 3e-141 AT5G06570 310 / 4e-105 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.010G127600 [exp] 207 / 3e-64 AT5G16080 346 / 2e-118 carboxyesterase 17 (.1) Potri.004G101400 [exp] 199 / 3e-61 AT5G16080 357 / 6e-123 carboxyesterase 17 (.1) Potri.017G113700 [exp] 192 / 8e-59 AT5G16080 358 / 3e-123 carboxyesterase 17 (.1) Potri.008G118400 [exp] 192 / 1e-58 AT1G68620 345 / 4e-118 alpha/beta-Hydrolases superfamily protein (.1) Potri.001G032400 [exp] 192 / 1e-58 AT1G68620 185 / 9e-56 alpha/beta-Hydrolases superfamily protein (.1) Potri.016G031500 [exp] 191 / 2e-58 AT1G68620 159 / 5e-46 alpha/beta-Hydrolases superfamily protein (.1) Potri.003G192600 [exp] 189 / 9e-58 AT1G68620 173 / 2e-51 alpha/beta-Hydrolases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015989 [exp] 448 / 2e-159 AT5G06570 337 / 1e-115 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10015988 [exp] 435 / 3e-154 AT5G06570 346 / 5e-119 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10036168 [exp] 384 / 6e-134 AT5G06570 321 / 2e-109 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10029341 [exp] 348 / 1e-119 AT5G06570 293 / 5e-98 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10008439 [exp] 333 / 3e-114 AT5G06570 281 / 8e-94 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10016204 [exp] 332 / 6e-114 AT5G06570 260 / 7e-86 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10013377 [exp] 325 / 5e-101 AT3G44050 1290 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10013376 [exp] 285 / 2e-95 AT5G06570 256 / 3e-84 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10024087 [exp] 194 / 2e-59 AT5G16080 187 / 1e-56 carboxyesterase 17 (.1) Lus10017587 [exp] 176 / 3e-52 AT5G16080 329 / 5e-112 carboxyesterase 17 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF00135 [poplar] [flax] COesterase Carboxylesterase family
Representative CDS sequence Show only first row Show all	>Potri.006G198800.1 pacid=42767077 polypeptide=Potri.006G198800.1.p locus=Potri.006G198800 ID=Potri.006G198800.1.v4.1 annot-version=v4.1 ATGGGTTCTCTCCCTCATGTAGTAGAAGATTGCGGTGGTGTTGTCCAACTCTTTAGTGACGGAACCATTTACAGGTCCAAAGATATAGGGTTCCCCATGC CAATCATCAACGACGAGTCCGTCCTCTTCAAAGACTGCCTCTTTGACAAAACGTACAACCTCCACCTCCGTCTCTACAAACCCACTTCAATATCACTATC ATCCCCTACAAAGAAGCTTTCCATCATACTTTACCTTCATGGAGGTGGATTTTGTGTAGGCACGCGTGAGTGGCCTAACTGTCACAACTGCTGCCTTAAA CTAGCTTCTGGGCTCAATGCACTCGTTGTCGCCCCTGACTATCGTTTGGCCCCAGAACATAGGCTACCGGCGGCCATGGAGGATGGACTTAGTGCCTTGC AGTGGCTACAAGCTCAGGTTTTGAGCGACAAAGGTGATGCATGGGTCAATGGTGGTAAAGTTGACTATGACCAGGTTTTTGTTTTGGGCGACTCATCTGG TGGCAATATTGCACACCACTTAGCGGTTCAGATCGGTGTCGGTTCGACCAGGTTGGCTCCGGTTCGGGTAAGAGGGTATATCCTACTAGCACCATTTTTT GGTGGGGTTGCTAGGACAAAGTCAGAGGAAGGGCCCAGTGAACAGTTGTTGAACTTGGAAATACTGGACCGTTTTTGGAGGCTATCCATGCCTGCTGGGG CAAGTAGAGACCACCCATTGGCGAACCCCTTCGGACCAGGTAGCTTGAATCTTGAGCTGGTGGCTCTTGATCCCATCATGGTGATCGTAGGTGGTTGTGA ACTGTTGAGAGATAGAGGTGAGGATTATGCAAGGAGGTTGAAGGAGATGGGAAAGAAAATTGAGTATGTTGAATTTGAGGGAAAGCAGCACGGTTTCTTC ACCAATGATCCTTACTCAGAAGCTTCAGAAGAAGTTATTCAAGTCATGAAAAAGTTTGTGATTGAAAACTCTAGTTAA
AA sequence Show only first row Show all	>Potri.006G198800.1 pacid=42767077 polypeptide=Potri.006G198800.1.p locus=Potri.006G198800 ID=Potri.006G198800.1.v4.1 annot-version=v4.1 MGSLPHVVEDCGGVVQLFSDGTIYRSKDIGFPMPIINDESVLFKDCLFDKTYNLHLRLYKPTSISLSSPTKKLSIILYLHGGGFCVGTREWPNCHNCCLK LASGLNALVVAPDYRLAPEHRLPAAMEDGLSALQWLQAQVLSDKGDAWVNGGKVDYDQVFVLGDSSGGNIAHHLAVQIGVGSTRLAPVRVRGYILLAPFF GGVARTKSEEGPSEQLLNLEILDRFWRLSMPAGASRDHPLANPFGPGSLNLELVALDPIMVIVGGCELLRDRGEDYARRLKEMGKKIEYVEFEGKQHGFF TNDPYSEASEEVIQVMKKFVIENSS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G06570			alpha/beta-Hydrolases superfam...		Potri.006G198800 [exp]	0	1
AT1G22340		ATUGT85A7	UDP-glucosyl transferase 85A7 ...		Potri.007G132400 [exp]	2.00	0.8064
AT1G49390			2-oxoglutarate (2OG) and Fe(II...		Potri.003G030400 [exp]	4.58	0.7786
AT5G50160		ATFRO8, FRO8	ferric reduction oxidase 8 (.1...		Potri.015G083200 [exp]	5.65	0.7913
AT3G05500			Rubber elongation factor prote...		Potri.013G017300 [exp]	11.66	0.7542	SRPP.2
					Potri.005G112750 [exp]	12.00	0.7371
AT3G54450			Major facilitator superfamily ...		Potri.001G027100 [exp]	17.17	0.7439
AT2G40030		NRPE1, DMS5, AT...	DEFECTIVE IN MERISTEM SILENCIN...		Potri.001G027232 [exp]	21.65	0.7206
AT2G28550	AP2_ERF	TOE1, RAP2.7	TARGET OF EARLY ACTIVATION TAG...		Potri.010G216200 [exp]	24.79	0.6935
					Potri.010G084201 [exp]	25.74	0.7030
AT4G23990		ATCSLG3	ARABIDOPSIS THALIANA CELLULOSE...		Potri.014G156200 [exp]	27.92	0.6824

Compare expression of checked genes

Potri.006G198800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.