Plant FIBer expression Database

Potri.006G199200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G54750 572 / 0 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.016G065600
[exp]
1033 / 0 AT3G54750 557 / 0.0 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10015991
[exp]
693 / 0 AT3G54750 488 / 4e-166 unknown protein
Lus10016201
[exp]
676 / 0 AT3G54750 492 / 2e-168 unknown protein
Lus10029345
[exp]
671 / 0 AT3G54750 482 / 2e-164 unknown protein
Lus10012287
[exp]
89 / 6e-21 AT3G54750 68 / 3e-14 unknown protein
PFAM info
Representative CDS sequence
>Potri.006G199200.1 pacid=42770209 polypeptide=Potri.006G199200.1.p locus=Potri.006G199200 ID=Potri.006G199200.1.v4.1 annot-version=v4.1
ATGGCAAAAGTTGCTGCACCGGGTGGCTTGTTAGGTTCTGTCACTGTTCAAATTGGTGGTGGTGGTGGTGGTGCTTCTTTAACTGATGGTCCAATGGTTA
GAAGGAAGACTCCGTCGGAACTGAGAGGAGAGCAGCTGAAGAGGACAAAAGTTCTGGAGATTGTAGATGAATCTCCAATGGGTTCAAAGAATAATAGTAG
TGCGGTGGATAATGGGCCTAGGAAACCAGATGCATCAAGGACTCCTAGATACATTGACACCCGTATGGATGAAGTATATCCTGTCAAAAAATCCAGGCTT
AGGATGCTTTCTGTAAAAGACAGTGCAAAGGAAATTACATCAACTGAGCAACCAATTAGCCTGAAGAACATCACTATGCTTTCAACTCTGGCTGCCAAGA
GGCGACAACTTTCACGTCCAGAGAATTCAGTTGCTTCTGATGAAGTTTCAAAAGATGGTGTGGTACAACCTCGCCAAACAATTGAAAATTGCAGTCAAAG
TATATTTCGCAGTGTTGCTCAGCTTTCATCCAGTTGTGAAAAGTCATCTGGATTGGCATTTGTTGACATGGATAAAGCATTAAAAGGACTTGTGGCCCAT
GAAATGCCTTACACTTCTGGTTTAAATGCTGCTTCTGAAATAGCTGGCAACCACAGTGGCAATTTCTGCTCTGAATGCAATATAGCTGGCCTAAAAGCTC
CTCTTGATTTTACTTTGAAAACTAGAATGCGGGTGGCGTCCTCTTGCTCAGTTAATCAAATTCATAGGTCAATCATGAGCAGTACCTACAATGGCATGCC
ACAGCTTGCATCCCAATTTGGAGATTCCCAGGACAATAGAAGCTCAGGGCAGGCACTGGCTTCTCAAATCCTTAGTTCTAAAGCTTTGCATTCATGGGTT
TACCCTCAATCTACCTTACCTGCTGCTGTCATATCAGTGCTAACCTTGTCAGCAACTGAGGGAGATTTTATAAGAAAACGGCAACTGGCGTGGGAGGATT
CTTTTCGGAGTCTTTATTACATGCTTCGAAAGAACATTTGCAATATTTTTTATGTGTGCACTTCACAATTTGTGGTGATGTTCACTAATAGTGATGGCCC
AGGAAGAACTGCACACCTATGCAATGCTTACATCTCCCAGTCAACAAGAGGTTTGAGGTCGTTGTTGAGAGAGCATGATATTTGTTTCTCTATGCCACTT
TGTCATTCTAAGGTAGAGCAAGTCACCACTGAAGATTTAGTTGAGCTCTCTGAGATTGAGAAACAGAATTTGGGCCAGACTCGTCGGCTTAGTTCCTTGT
CTGATGTTGATAATAGCCCACAATCTCTGCTGGCTTTCTGTGGAAACAAGAATGTACATGGATTATATGATTTTTTGTTAAATTACAGATCTTCCCTTAC
CTTTCTTTCTGGAGTTGATGTTCCTGTATTGTATTCACCTGTTCCATTTCAGAATGCAGCTCTTTCTGCTCCGGAGATAAAATGTGTAGAGGTAAAAAGA
GCCGACAATAATGCTGCCTCCCCTAAAGGCACTGGATCTAGTCAAGGTTCATCCACCGGTCTCTTGTCCAGCATAGAAATTAAGGATGCATGTATCCCAC
CATGGATTGTTTGCCGTGTATGTGCTCTCATGGGTTCTGAAGGGAGAAACTTTGAGGCTAGCTTTACAACAGAACGCACCTCAATTGGCTTGAATGCGGC
TCTTGAGACAGCCTGTGAGAAACCTGATCAAGCTGCAGCGGTTGAAGGCTTGCAAGAAAGCAGTCATGCTTTTGGTATTCCAGAAGCCACCGTTGCTCCT
TGCTTGGGTTCTGGCTTCTTAAAAGGCTTGAAGTACTGTGATGGTTCTTATACAGCTTCCCTCTCTCCAGCCTGA
AA sequence
>Potri.006G199200.1 pacid=42770209 polypeptide=Potri.006G199200.1.p locus=Potri.006G199200 ID=Potri.006G199200.1.v4.1 annot-version=v4.1
MAKVAAPGGLLGSVTVQIGGGGGGASLTDGPMVRRKTPSELRGEQLKRTKVLEIVDESPMGSKNNSSAVDNGPRKPDASRTPRYIDTRMDEVYPVKKSRL
RMLSVKDSAKEITSTEQPISLKNITMLSTLAAKRRQLSRPENSVASDEVSKDGVVQPRQTIENCSQSIFRSVAQLSSSCEKSSGLAFVDMDKALKGLVAH
EMPYTSGLNAASEIAGNHSGNFCSECNIAGLKAPLDFTLKTRMRVASSCSVNQIHRSIMSSTYNGMPQLASQFGDSQDNRSSGQALASQILSSKALHSWV
YPQSTLPAAVISVLTLSATEGDFIRKRQLAWEDSFRSLYYMLRKNICNIFYVCTSQFVVMFTNSDGPGRTAHLCNAYISQSTRGLRSLLREHDICFSMPL
CHSKVEQVTTEDLVELSEIEKQNLGQTRRLSSLSDVDNSPQSLLAFCGNKNVHGLYDFLLNYRSSLTFLSGVDVPVLYSPVPFQNAALSAPEIKCVEVKR
ADNNAASPKGTGSSQGSSTGLLSSIEIKDACIPPWIVCRVCALMGSEGRNFEASFTTERTSIGLNAALETACEKPDQAAAVEGLQESSHAFGIPEATVAP
CLGSGFLKGLKYCDGSYTASLSPA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G54750 unknown protein Potri.006G199200
[exp]
0 1
AT5G49160 MET2, DMT1, DMT... METHYLTRANSFERASE I, METHYLTRA... Potri.004G134000
[exp]
2.23 0.9275 DMT901,Pt-MET1.2
AT5G48720 XRI1, XRI x-ray induced transcript 1 (.1... Potri.002G244000
[exp]
3.31 0.8772
AT2G40550 ETG1 E2F target gene 1 (.1) Potri.019G056200
[exp]
5.65 0.8708
AT5G46740 UBP21 ubiquitin-specific protease 21... Potri.001G142000
[exp]
6.78 0.9054 Pt-UBP21.2
AT5G08020 ATRPA70B ARABIDOPSIS THALIANA RPA70-KDA... Potri.015G057300
[exp]
9.16 0.8949
AT3G03620 MATE efflux family protein (.1... Potri.015G139500
[exp]
15.49 0.8517
AT2G36200 P-loop containing nucleoside t... Potri.006G210700
[exp]
16.73 0.8734
AT3G51280 Tetratricopeptide repeat (TPR)... Potri.007G056500
[exp]
18.33 0.8819
AT4G21270 KATAP, ATK1 KINESIN-LIKE PROTEIN IN ARABI... Potri.004G031600
[exp]
18.81 0.8995 Pt-ATK1.1
AT3G19210 ATRAD54, CHR25 homolog of RAD54 (.1.2) Potri.004G141500
[exp]
19.33 0.8568

Potri.006G199200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.