Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	CPK20.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38910 899 / 0 CPK20 calcium-dependent protein kinase 20 (.1) AT3G10660 838 / 0 ATCPK2, CPK2 calmodulin-domain protein kinase cdpk isoform 2 (.1) AT5G04870 835 / 0 AK1, ATCPK1, CPK1 calcium dependent protein kinase 1 (.1) AT4G35310 692 / 0 CPK5, ATCPK5 calmodulin-domain protein kinase 5 (.1) AT2G17290 689 / 0 ATCPK6, ATCDPK3, CPK6 calcium dependent protein kinase 6, ARABIDOPSIS THALIANA CALCIUM-DEPENDENT PROTEIN KINASE 6, ARABIDOPSIS THALIANA CALMODULIN-DOMAIN PROTEIN KINASE 3, Calcium-dependent protein kinase family protein (.1) AT4G38230 684 / 0 CPK26, ATCPK26 ARABIDOPSIS THALIANA CALCIUM-DEPENDENT PROTEIN KINASE 26, calcium-dependent protein kinase 26 (.1.2.3) AT1G35670 667 / 0 CPK11, ATCDPK2, ATCPK11 calcium-dependent protein kinase 2 (.1) AT4G09570 662 / 0 CPK4, ATCPK4 calcium-dependent protein kinase 4 (.1) AT5G23580 653 / 0 ATCDPK9, CPK12, CDPK9, ATCPK12 CALCIUM-DEPENDENT PROTEIN KINASE 12, ARABIDOPSIS THALIANA CALMODULIN-LIKE DOMAIN PROTEIN KINASE 9, calmodulin-like domain protein kinase 9 (.1) AT5G19360 621 / 0 CPK34 calcium-dependent protein kinase 34 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G065700 [exp] 1100 / 0 AT2G38910 892 / 0.0 calcium-dependent protein kinase 20 (.1) Potri.008G014700 [exp] 857 / 0 AT5G04870 922 / 0.0 calcium dependent protein kinase 1 (.1) Potri.010G244800 [exp] 850 / 0 AT5G04870 899 / 0.0 calcium dependent protein kinase 1 (.1) Potri.006G200600 [exp] 784 / 0 AT5G04870 842 / 0.0 calcium dependent protein kinase 1 (.1) Potri.016G066700 [exp] 758 / 0 AT3G10660 834 / 0.0 calmodulin-domain protein kinase cdpk isoform 2 (.1) Potri.004G207300 [exp] 718 / 0 AT2G17290 969 / 0.0 calcium dependent protein kinase 6, ARABIDOPSIS THALIANA CALCIUM-DEPENDENT PROTEIN KINASE 6, ARABIDOPSIS THALIANA CALMODULIN-DOMAIN PROTEIN KINASE 3, Calcium-dependent protein kinase family protein (.1) Potri.009G168600 [exp] 709 / 0 AT2G17290 968 / 0.0 calcium dependent protein kinase 6, ARABIDOPSIS THALIANA CALCIUM-DEPENDENT PROTEIN KINASE 6, ARABIDOPSIS THALIANA CALMODULIN-DOMAIN PROTEIN KINASE 3, Calcium-dependent protein kinase family protein (.1) Potri.T012800 [exp] 697 / 0 AT1G35670 795 / 0.0 calcium-dependent protein kinase 2 (.1) Potri.013G112500 [exp] 692 / 0 AT1G35670 815 / 0.0 calcium-dependent protein kinase 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015992 [exp] 916 / 0 AT2G38910 880 / 0.0 calcium-dependent protein kinase 20 (.1) Lus10012285 [exp] 915 / 0 AT2G38910 884 / 0.0 calcium-dependent protein kinase 20 (.1) Lus10016200 [exp] 898 / 0 AT2G38910 868 / 0.0 calcium-dependent protein kinase 20 (.1) Lus10029346 [exp] 866 / 0 AT2G38910 834 / 0.0 calcium-dependent protein kinase 20 (.1) Lus10028862 [exp] 834 / 0 AT5G04870 940 / 0.0 calcium dependent protein kinase 1 (.1) Lus10008958 [exp] 799 / 0 AT5G04870 877 / 0.0 calcium dependent protein kinase 1 (.1) Lus10013603 [exp] 770 / 0 AT3G10660 803 / 0.0 calmodulin-domain protein kinase cdpk isoform 2 (.1) Lus10021248 [exp] 767 / 0 AT3G10660 809 / 0.0 calmodulin-domain protein kinase cdpk isoform 2 (.1) Lus10022986 [exp] 714 / 0 AT4G35310 950 / 0.0 calmodulin-domain protein kinase 5 (.1) Lus10001384 [exp] 714 / 0 AT4G35310 949 / 0.0 calmodulin-domain protein kinase 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0220 [poplar] [flax] EF_hand PF13499 [poplar] [flax] EF-hand_7 EF-hand domain pair
Representative CDS sequence Show only first row Show all	>Potri.006G199400.1 pacid=42770342 polypeptide=Potri.006G199400.1.p locus=Potri.006G199400 ID=Potri.006G199400.1.v4.1 annot-version=v4.1 ATGGGGAATACATGTGTAGGACCAAATCTAGGCAATAATGGATTCTTCAATACTGTTACTGCTGCTATTTGGCGTTCCCGGCCACCAGAGGACCGGTTGC ACCTTCCTAAAGGAGAAGATAGTAGCAAGAATAATGGTGATTCAGAAGCGGGTCCGGTTGGTGGATCAAAAAAATCTGAGGGTTCTAAAAAAGGATCAAA TGATCATCCACCAATACTGGTCCAGAACACCCCGCCTGAACCAGTTAAAATGCCCAATGAAGCACCACCACCTAAAGTCATTGAGCATGAAAAGTCCATT AAGCAGGAAATGAGAGAAGTGGGAATTGGTCAGCCAGGGGAGGAGCAGAAGGGGAAGAAACCTACTCATGTTAAGAGGGTTTCGAGTGTAGCGCTTCAAA TGGAATCTGTGTTAGGGAGGAAAACTGGGAATTTGAAGGATATTTATAGTTTAGGGAGGAAGCTTGGACAAGGGCAATTTGGAACAACGTTTCTTTGCAT TGAGAAGGCGACTGGGAAGGAGTTTGCTTGCAAATCCATTGCGAAGAGGAAGTTGACGACGCAGGAGGATGTGGATGATGTTAGGAGGGAGATTCAGATA ATGCATCATTTGGAGGGTCATCCTAATGTGATAAAAATTGTGGATGCTTATGAGGATGCTGTTGCAGTTCATGTCGTTATGGAACTTTGTTCTGGCGGGG AGCTTTTTGACAGAATTGTTCGGAGGGGGCATTATACGGAAAAACAGGCAGCTGAGCTTGCGAGGTTAATTGTTGGTGTTGTGGAAGCATGCCATTCTTT GGGTGTTATGCACCGGGATTTGAAGCCTGAGAATTTTCTGTTTGTCAGTCAGGAAGAGGAGTCGCCGCTTAAAACGATAGACTTTGGTCTCTCAGTGTTC TTCAGGCCAGGTGAAACTTTCACTGACATAGTTGGCAGCCCCTACTATGTAGCTCCAGAAGTGTTGCGGAAGCTATATGGTCCAAAATGTGATGTTTGGA GTGCTGGGGTGATCATTTATATTTTGTTAAGTGGGGTTCCCCCATTCTGGGATGAAACGGAACAAGGAATATTTGAGCAGGTTTTAAAAGGGGAACTAGA CTTTGAATCAGAACCTTGGCCTAATATCTCTGAAAGTGCAAAAGATCTTGTTCGGAAAATGCTAGTAAGGGACCCTAAAAGACGGCTGACAGCCCATGAA GTTCTCTGCCATCCTTGGGTGCAGATGGAAGGTGTTGCACCTGATAGACCTCTTGACTCAGCTGTTCTAAGTCGGTTGATGCAATTCTCAGCCATGAATA GGCTCAAGAAAATTGTCATCCGAGTCATTGCTGAAAGCCTCTCTGAAGAGGAAATTGCAGGTCTGAAAGAAATGTTCAAGATGATAGATGCAGACAATAG TGGACATATCACTCTTGAGGAACTGAAGACTGGTTTGGAGAAAGTGGGTGCTAATACCAAGGATTCTGAAATTGCTGGGCTAATGCAAGCTGCTGATGTT GATAACAGTGGTACCATAGACTATGGCGAGTTCGTAGCAGCCATGCTCCATCTAAACAAGATTGAGAAGGAGGATCATCTATATGCAGCCTTCTCATACT TTGACCAAGATGGGAGTGGGTACATCACTAAAGATGAGCTCCAACAGGCCTGTGAGAAGTTTGGTTTAGGAGATGTTCAGTTAGATGAAATTATACGTGA AGTTGACCAAGATGATGATGGACGCATCGATTACAGTGAATTTGTGGCTATGATGCAAGACACTGGTTTTGGCCAAACCAGATCACAAATAACTTAG
AA sequence Show only first row Show all	>Potri.006G199400.1 pacid=42770342 polypeptide=Potri.006G199400.1.p locus=Potri.006G199400 ID=Potri.006G199400.1.v4.1 annot-version=v4.1 MGNTCVGPNLGNNGFFNTVTAAIWRSRPPEDRLHLPKGEDSSKNNGDSEAGPVGGSKKSEGSKKGSNDHPPILVQNTPPEPVKMPNEAPPPKVIEHEKSI KQEMREVGIGQPGEEQKGKKPTHVKRVSSVALQMESVLGRKTGNLKDIYSLGRKLGQGQFGTTFLCIEKATGKEFACKSIAKRKLTTQEDVDDVRREIQI MHHLEGHPNVIKIVDAYEDAVAVHVVMELCSGGELFDRIVRRGHYTEKQAAELARLIVGVVEACHSLGVMHRDLKPENFLFVSQEEESPLKTIDFGLSVF FRPGETFTDIVGSPYYVAPEVLRKLYGPKCDVWSAGVIIYILLSGVPPFWDETEQGIFEQVLKGELDFESEPWPNISESAKDLVRKMLVRDPKRRLTAHE VLCHPWVQMEGVAPDRPLDSAVLSRLMQFSAMNRLKKIVIRVIAESLSEEEIAGLKEMFKMIDADNSGHITLEELKTGLEKVGANTKDSEIAGLMQAADV DNSGTIDYGEFVAAMLHLNKIEKEDHLYAAFSYFDQDGSGYITKDELQQACEKFGLGDVQLDEIIREVDQDDDGRIDYSEFVAMMQDTGFGQTRSQIT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G38910		CPK20	calcium-dependent protein kina...		Potri.006G199400 [exp]	0	1	CPK20.1
AT2G15790		CYP40, SQN	SQUINT, CYCLOPHILIN 40, peptid...		Potri.007G040100 [exp]	2.00	0.9269
AT1G53750		RPT1A	regulatory particle triple-A 1...		Potri.018G056600 [exp]	5.00	0.9102
AT5G53150			DNAJ heat shock N-terminal dom...		Potri.012G098800 [exp]	8.36	0.8567
AT5G05210			Surfeit locus protein 6 (.1.2)		Potri.008G173300 [exp]	8.48	0.8993
AT1G36050			Endoplasmic reticulum vesicle ...		Potri.002G094400 [exp]	8.66	0.9200
AT4G14770	CPP	ATTCX2	TESMIN/TSO1-like CXC 2 (.1)		Potri.018G030000 [exp]	12.48	0.8858
					Potri.015G024900 [exp]	14.42	0.8833
AT3G54290			unknown protein		Potri.008G019700 [exp]	14.45	0.8875
AT2G24290			Protein of unknown function (D...		Potri.013G026900 [exp]	17.32	0.8842
AT2G32540		ATCSLB4, ATCSLB...	CELLULOSE SYNTHASE LIKE B4, ce...		Potri.014G155401 [exp]	19.77	0.8692

Compare expression of checked genes

Potri.006G199400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.