Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06530 1014 / 0 AtABCG22, ABCG22 Arabidopsis thaliana ATP-binding cassette G22, ATP-binding cassette G22, ABC-2 type transporter family protein (.1.2.3) AT3G52310 861 / 0 ABCG27 ATP-binding cassette G27, ABC-2 type transporter family protein (.1) AT4G27420 497 / 2e-167 ABCG9 ATP-binding cassette G9, ABC-2 type transporter family protein (.1) AT1G31770 493 / 6e-166 ABCG14 ATP-binding cassette G14, ATP-binding cassette 14 (.1) AT3G13220 491 / 1e-164 MSR02, AtABCG26, ABCG26, WBC27 ATP-binding cassette G26, ABC-2 type transporter family protein (.1) AT1G71960 464 / 3e-154 ATABCG25, ABCG25 Arabidopsis thaliana ATP-binding cassette G25, ATP-binding casette G25, ATP-binding casette family G25 (.1) AT3G25620 452 / 7e-150 ABCG21 ATP-binding cassette G21, ABC-2 type transporter family protein (.1.2) AT2G37360 231 / 3e-65 ABCG2 ATP-binding cassette G2, ABC-2 type transporter family protein (.1) AT2G01320 221 / 6e-62 ABCG7 ATP-binding cassette G7, ABC-2 type transporter family protein (.1.2.3.4) AT3G53510 221 / 1e-61 ABCG20 ATP-binding cassette G20, ABC-2 type transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G065900 [exp] 1188 / 0 AT5G06530 1139 / 0.0 Arabidopsis thaliana ATP-binding cassette G22, ATP-binding cassette G22, ABC-2 type transporter family protein (.1.2.3) Potri.001G404000 [exp] 499 / 2e-168 AT4G27420 690 / 0.0 ATP-binding cassette G9, ABC-2 type transporter family protein (.1) Potri.004G236500 [exp] 494 / 4e-166 AT1G31770 970 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1) Potri.001G370600 [exp] 494 / 6e-166 AT3G13220 1012 / 0.0 ATP-binding cassette G26, ABC-2 type transporter family protein (.1) Potri.011G123200 [exp] 491 / 2e-165 AT4G27420 737 / 0.0 ATP-binding cassette G9, ABC-2 type transporter family protein (.1) Potri.010G131900 [exp] 474 / 4e-158 AT3G25620 852 / 0.0 ATP-binding cassette G21, ABC-2 type transporter family protein (.1.2) Potri.003G046800 [exp] 473 / 6e-158 AT1G31770 945 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1) Potri.019G083000 [exp] 448 / 4e-148 AT1G71960 782 / 0.0 Arabidopsis thaliana ATP-binding cassette G25, ATP-binding casette G25, ATP-binding casette family G25 (.1) Potri.013G111900 [exp] 446 / 1e-147 AT1G71960 795 / 0.0 Arabidopsis thaliana ATP-binding cassette G25, ATP-binding casette G25, ATP-binding casette family G25 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015994 [exp] 969 / 0 AT5G06530 1033 / 0.0 Arabidopsis thaliana ATP-binding cassette G22, ATP-binding cassette G22, ABC-2 type transporter family protein (.1.2.3) Lus10012284 [exp] 745 / 0 AT5G06530 802 / 0.0 Arabidopsis thaliana ATP-binding cassette G22, ATP-binding cassette G22, ABC-2 type transporter family protein (.1.2.3) Lus10034775 [exp] 506 / 7e-171 AT1G31770 1028 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1) Lus10035692 [exp] 503 / 9e-170 AT1G31770 1001 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1) Lus10016649 [exp] 493 / 2e-165 AT3G13220 1055 / 0.0 ATP-binding cassette G26, ABC-2 type transporter family protein (.1) Lus10037283 [exp] 489 / 2e-164 AT1G31770 984 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1) Lus10022564 [exp] 488 / 2e-163 AT3G13220 1057 / 0.0 ATP-binding cassette G26, ABC-2 type transporter family protein (.1) Lus10033314 [exp] 482 / 1e-162 AT1G31770 941 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1) Lus10034387 [exp] 474 / 1e-157 AT3G25620 791 / 0.0 ATP-binding cassette G21, ABC-2 type transporter family protein (.1.2) Lus10029635 [exp] 461 / 8e-154 AT4G27420 698 / 0.0 ATP-binding cassette G9, ABC-2 type transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00005 [poplar] [flax] ABC_tran ABC transporter CL0181 [poplar] [flax] ABC-2 PF01061 [poplar] [flax] ABC2_membrane ABC-2 type transporter
Representative CDS sequence Show only first row Show all	>Potri.006G199500.9 pacid=42769668 polypeptide=Potri.006G199500.9.p locus=Potri.006G199500 ID=Potri.006G199500.9.v4.1 annot-version=v4.1 ATGCAAAACTCTCCTCAAGATTGTAGCATGGAGAGAGCAAACACATCCTTAGCGAGAACCAAATCAGAACAATTGGCTGAGACAGTGGAGGCAGCGTTTA AATCTCCCATGAACAACGATGGGGTTTCCGAAGGCGGCAGCGGCGGGACACTCTCAGGTAAGTCCAGCAAGAGGCTAACGACGGCAGCCTCACCGGGACG TACCACTTCGGGTGGTAACAAAAATACACACATTAGGAAGTCAAGGAGTGCACAGATGAAGTTTGAATTGGATGACGTCAACAGTGGAGCAGCTCTAAGC CGGGCCTCTAGTGCCAGCCTGGGCTTCTCTTTCTCCTTCACTGGCTTCAACATGCCACCTGATGAAATAGCTGACTCCATGCCGTTTAGTGATGATGATA TACCGGAGGATCTTGAAGCCGGAATGCGTAAGCAGAAATTTCAAACTGAACCCTCCTTGCCAATTTACCTGAAGTTCAGAGATGTTACATACAAGGTGAT CATCAAAGGAATGACCTCAACCGAGGAAAAGGATATCTTGAATGGGATCAGTGGTTCGGTGGATCCAGGGGAAGTTTTGGCTCTTATGGGACCTTCAGGA AGTGGAAAAACAACACTTCTGAATCTGCTTGGCGGCAGGTTAAATCAGCCCACTGTCGGTGGTTCAATCACTTACAATGACGGACCATACTCCAAGTTCT TAAAAAGTAGGATAGGATTCGTGACACAAGACGACATTCTGTTTCCTCACCTTACAGTGAAAGAAACATTGACATATGCAGCCCTCCTTCGATTGCCAAA GACATTGACAAAACAACAGAAGCAAAAACGAGCCATGGACGTCATCTATGAGCTAGGCTTAGAGAGGTGCCAAGACACCGTGATTGGTGGCTCATTTGTG CGTGGAGTGTCAGGTGGGGAGAGGAAAAGAGTTTGCATTGGCAATGAGATTATAATCAACCCTTCAATCTTGTTTCTTGATGAACCAACCTCGGGCTTGG ATTCTACAACTGCTTTAAAGACAGTGCAGCTGTTACAAGATATGGCAGAGGGTGGGAAAACAGTGGTGACAACTATCCACCAGCCATCTAGTAGACTCTT CCACAAATTTGACAAGTTGATTCTTCTTGGGAAAGGGAGTTTGCTTTATTTTGGAAAATCATCAGAAGCAATGCTGTACTTCTCATCTATAGGTTGCAAC CCGCTTATTGCCATGAACCCTGCAGAGTTCTTGCTAGACCTTGCAAATGGCAATATAAATGATGTTTCTGTCCCATCTGAATTGGACGATAAAGTGCAAA TAGTGAATTCAGATGCAGGAAAAAGAAACGGGAAGCCTTCTCCTGCAGTTGTTCATGAGTACCTCGTGGAGGCCTATGAGACACGAGTTGCGGTCAAAGA GAAGAAGAAACTAATGGTTCCTATACCCCTTGATGAAGAAGTGAAGGCAAAAGTGTCTTCTCTGAAACGACAATGGGGGGCAAGCTGGTGGCAACAATAT ACCATTTTGTTCTGCAGGGGAATCAAAGAAAGGCGGCACGACTATTTTAGCTGGTTGAGAATCACCCAAGTTCTCTCTACTGCAATTATCTTGGGATTAC TATGGTGGAATTCAGATACTAATAGCCTCAAAGGTCTTCAAGATCAGGCAGGGCTGCTGTTCTTCATTGCGGTTTTCTGGGGATTTTTTCCTGTATTCAC AGCAATCTTCACATTTCCCCAAGAAAGAGCCATGTTGAGTAAAGAACGGGCAGCTGACATGTACAGACTAAGTGCATATTTCTTGGCAAGGACTACAAGC GACCTTCCACTTGATCTAGTACTACCAGTACTTTTCCTTCTCGTCGTCTACTTCATGGCAGGCTTGCGAATGAGTGCTGCTCCATTTTTCCTAACCATGC TCACGGTTTTTCTCAGCATTATTGCTGCTCAGGGACTCGGACTAGCTATTGGGGCTACCCTGATGGACTTAAAGAGGGCCACAACTCTAGCTTCAGTTAC TGTGATGACCTTCATGCTGGCTGGAGGGTATTTTGTAAAGAGAGTTCCAGTATTTGTATCTTGGATCCGCTATCTGTCTTTCAACTACCACACCTATAAG CTTCTCCTCAAGGTTCAATATAAACACATGACACCAGTTTTAAATGGAATGAGAATAGACAGTGGCTTGACGGAAGTTAGTGCCCTGGTGGCAATGGTTT TTGGCTACCGTCTCTTGGCTTATATTTCCTTGCGGAGAATGAAGCTTTGTGCGCAGTAA
AA sequence Show only first row Show all	>Potri.006G199500.9 pacid=42769668 polypeptide=Potri.006G199500.9.p locus=Potri.006G199500 ID=Potri.006G199500.9.v4.1 annot-version=v4.1 MQNSPQDCSMERANTSLARTKSEQLAETVEAAFKSPMNNDGVSEGGSGGTLSGKSSKRLTTAASPGRTTSGGNKNTHIRKSRSAQMKFELDDVNSGAALS RASSASLGFSFSFTGFNMPPDEIADSMPFSDDDIPEDLEAGMRKQKFQTEPSLPIYLKFRDVTYKVIIKGMTSTEEKDILNGISGSVDPGEVLALMGPSG SGKTTLLNLLGGRLNQPTVGGSITYNDGPYSKFLKSRIGFVTQDDILFPHLTVKETLTYAALLRLPKTLTKQQKQKRAMDVIYELGLERCQDTVIGGSFV RGVSGGERKRVCIGNEIIINPSILFLDEPTSGLDSTTALKTVQLLQDMAEGGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKSSEAMLYFSSIGCN PLIAMNPAEFLLDLANGNINDVSVPSELDDKVQIVNSDAGKRNGKPSPAVVHEYLVEAYETRVAVKEKKKLMVPIPLDEEVKAKVSSLKRQWGASWWQQY TILFCRGIKERRHDYFSWLRITQVLSTAIILGLLWWNSDTNSLKGLQDQAGLLFFIAVFWGFFPVFTAIFTFPQERAMLSKERAADMYRLSAYFLARTTS DLPLDLVLPVLFLLVVYFMAGLRMSAAPFFLTMLTVFLSIIAAQGLGLAIGATLMDLKRATTLASVTVMTFMLAGGYFVKRVPVFVSWIRYLSFNYHTYK LLLKVQYKHMTPVLNGMRIDSGLTEVSALVAMVFGYRLLAYISLRRMKLCAQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G06530		AtABCG22, ABCG2...	Arabidopsis thaliana ATP-bindi...		Potri.006G199500 [exp]	0	1
AT1G27170			transmembrane receptors;ATP bi...		Potri.015G043600 [exp]	6.00	0.7596
AT5G41920	GRAS		GRAS family transcription fact...		Potri.006G021400 [exp]	23.32	0.7120
AT1G70940		PIN3, ATPIN3	ARABIDOPSIS PIN-FORMED 3, Auxi...		Potri.010G112800 [exp]	26.94	0.6948	PIN3.1,PIN3
AT2G01570	GRAS	RGA1	REPRESSOR OF GA1-3 1, REPRESSO...		Potri.004G089800 [exp]	35.24	0.7462
AT1G54570			Esterase/lipase/thioesterase f...		Potri.005G046600 [exp]	42.96	0.7161
AT4G22200		AKT3, AKT2/3	potassium transport 2/3 (.1)		Potri.003G018800 [exp]	80.19	0.6578	Pt-AKT2.1
AT5G53420			CCT motif family protein (.1.2...		Potri.012G014000 [exp]	103.19	0.6688
AT5G23980		FRO2, ATFRO4, F...	ferric reduction oxidase 4 (.1...		Potri.017G142800 [exp]	115.02	0.7006	FRO2.1
AT1G55110	C2H2ZnF	ARABIDOPSISTHAL...	indeterminate(ID)-domain 7 (.1...		Potri.018G052200 [exp]	153.49	0.6598
AT2G32640			Lycopene beta/epsilon cyclase ...		Potri.014G156800 [exp]	160.74	0.6473

Compare expression of checked genes

Potri.006G199500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.