Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06820 877 / 0 CCR2, CRTISO CAROTENOID AND CHLOROPLAST REGULATION 2, carotenoid isomerase (.1) AT1G57770 155 / 3e-40 FAD/NAD(P)-binding oxidoreductase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G066000 [exp] 1092 / 0 AT1G06820 903 / 0.0 CAROTENOID AND CHLOROPLAST REGULATION 2, carotenoid isomerase (.1) Potri.003G005800 [exp] 183 / 3e-50 AT1G57770 869 / 0.0 FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.007G025300 [exp] 66 / 3e-11 AT5G49555 943 / 0.0 FAD/NAD(P)-binding oxidoreductase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029347 [exp] 894 / 0 AT1G06820 913 / 0.0 CAROTENOID AND CHLOROPLAST REGULATION 2, carotenoid isomerase (.1) Lus10016199 [exp] 879 / 0 AT1G06820 912 / 0.0 CAROTENOID AND CHLOROPLAST REGULATION 2, carotenoid isomerase (.1) Lus10037348 [exp] 156 / 2e-40 AT1G57770 900 / 0.0 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10035770 [exp] 139 / 1e-34 AT1G57770 832 / 0.0 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10041743 [exp] 64 / 2e-10 AT5G49555 933 / 0.0 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10014308 [exp] 64 / 2e-10 AT5G49555 850 / 0.0 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10024010 [exp] 59 / 6e-09 AT5G49555 607 / 0.0 FAD/NAD(P)-binding oxidoreductase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF01593 [poplar] [flax] Amino_oxidase Flavin containing amine oxidoreductase
Representative CDS sequence Show only first row Show all	>Potri.006G199600.1 pacid=42769448 polypeptide=Potri.006G199600.1.p locus=Potri.006G199600 ID=Potri.006G199600.1.v4.1 annot-version=v4.1 ATGAGTCTAGGGTTCAAGAATTCTATATTTTCTGGTCAGTTCAATACTGTCCAGTTAGGGAGGTTCAGACCCAGAAGCCAAAAACATAGGATTTCGTCTG TAGAACCTGTCCAAACCTCAGTTTTCAGTGGTTATATTGTGCCCAGAAACATAAAAAGCAAAATTGACAGTCTTGGTGAAGTAAAGTTAAATAAGGACTT TATTTTGAGGTCAAAGGCCGTGTTAACTGTGGATAAAGAAGTGGATATTGAAGGAAATGAAGGAGTGAGCAGAGAGAGGAGTGATTATGATGTAATTGTT ATTGGGTCTGGTATTGTTGGGTTGGTTGCTGCTACACAGTTGGCAGTGAAGGGAGCTAAAGTTTTGGTCTTGGAGAAGTATGTGATTCCTGGTGGGAGTT CTGGGTATTATGAGAGGGATGGATATACTTTTGATGTTGGCTCTTCTGTTATGTTTGGTTTCAGTGACAAGGGCAACCTAAATATGATAACACGAGCATT GGCAGCAGTTGGTTGTGAAATGGAGGTGATTCCTGATCCCACTACTGTCCATTTTCATCTACCTAATAACCTTTCTGTTAAAGTTCCCAAAGAGTACAGC GACTTCATCTCAGAACTTACTGCTAAGTTTCCCCATGAAAAGGAAGGGATCCTTAAATTCTATAGTGAATGCTGGAAGATATTCAATGCCTTGAACTCTT TGGAACTGAAGTCGCTCGAGGAGCCAATCTACCTGCTTGGACAATTCTTTCAGAAGCCTCTTGAATGCTTGACACTAGCTTATTATCTGCCCCAAAATGC TGGAGACATCGCTCGAAAGTACATAAACGATCCTGAGTTGTTGTCTTTCATTGATGCAGAGTGTTTCATAGTGAGCACAGTCAATGCTTTGCAGACCCCA ATGATCAATGCGGGCATGGTTTTATGTGATAGGCATTTTGGAGGGATCAATTATCCTGTTGGTGGGGTTGGTGGAATTGCAAAGTCCTTGTCAAAAGGTC TGATTGATCAGGGCAGTGAAATTCTTTACAGGGCAAACGCGACCAACATCATTCTTGAGCATGGAAAGGCTGTAGGAGTGAGGCTTTCAGATGGAAGGGA GTTCTTTGCCAAAACCATAATATCAAATGCTACTAGATGGGATACCTTTGGGAAGTTGTTGAAAGGAGAAACCCTTCCAAAAGAGGAAGAAAATTTTCAA AAAGTTTATGTCAAGGCTCCATCTTTTCTTTCCATTCACATGGGTGTTAAAGCCGAGGTTCTACCACCAGATACAGATTGCCACCACTTTGTTCTTGAGG ATGACTGGGCAAGATTAGAGGAGCCTTATGGAAGCATATTCCTAAGCATTCCAACTGTTCTTGATTCATCATTGGCTCCTGAAGGCCGTCATATACTCCA CATATTTACAACATCTTCCATTGAAGACTGGGAGGGACTCTCGACAGAGGACTACGAGGCAAAGAAGAAGGTTGTGGCTTATGAGATTATAAGCAGATTG GAGAAGAAACTTTTTCCGGGGCTCAGATCATCAATTACTTTCATGGAGGTAGGTTCACCCAAGACACACAGGAGGTACTTGGCTCGTGACAAGGGTACAT ATGGACCAATGCCACGCAGTACTCCTAAAGGTTTATTGGGAATGCCATTCAATACAACAGCTGTAGATGGTCTTTACTGTGTTGGCGATAGCTGCTTTCC AGGACAGGGTGTTATAGCTGTAGCTTTTTCAGGAGTAATGTGTGCTCATCGAGTAGCTGCTGATATTGGCATTGAGAAAAGGTCCCCTGTAATGGATGCT GCTCTCCTCCGGCTTCTTGGTTGGTTAAGGACCTTGGCTTGA
AA sequence Show only first row Show all	>Potri.006G199600.1 pacid=42769448 polypeptide=Potri.006G199600.1.p locus=Potri.006G199600 ID=Potri.006G199600.1.v4.1 annot-version=v4.1 MSLGFKNSIFSGQFNTVQLGRFRPRSQKHRISSVEPVQTSVFSGYIVPRNIKSKIDSLGEVKLNKDFILRSKAVLTVDKEVDIEGNEGVSRERSDYDVIV IGSGIVGLVAATQLAVKGAKVLVLEKYVIPGGSSGYYERDGYTFDVGSSVMFGFSDKGNLNMITRALAAVGCEMEVIPDPTTVHFHLPNNLSVKVPKEYS DFISELTAKFPHEKEGILKFYSECWKIFNALNSLELKSLEEPIYLLGQFFQKPLECLTLAYYLPQNAGDIARKYINDPELLSFIDAECFIVSTVNALQTP MINAGMVLCDRHFGGINYPVGGVGGIAKSLSKGLIDQGSEILYRANATNIILEHGKAVGVRLSDGREFFAKTIISNATRWDTFGKLLKGETLPKEEENFQ KVYVKAPSFLSIHMGVKAEVLPPDTDCHHFVLEDDWARLEEPYGSIFLSIPTVLDSSLAPEGRHILHIFTTSSIEDWEGLSTEDYEAKKKVVAYEIISRL EKKLFPGLRSSITFMEVGSPKTHRRYLARDKGTYGPMPRSTPKGLLGMPFNTTAVDGLYCVGDSCFPGQGVIAVAFSGVMCAHRVAADIGIEKRSPVMDA ALLRLLGWLRTLA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G06820		CCR2, CRTISO	CAROTENOID AND CHLOROPLAST REG...		Potri.006G199600 [exp]	0	1
AT2G03380			Pentatricopeptide repeat (PPR)...		Potri.008G092900 [exp]	1.41	0.9335
					Potri.008G089401 [exp]	1.41	0.9448
AT5G17620			unknown protein		Potri.013G072300 [exp]	6.92	0.9204
AT4G24520		AR1, ATR1	ARABIDOPSIS CYTOCHROME REDUCTA...		Potri.002G106566 [exp]	9.16	0.9068
AT2G01570	GRAS	RGA1	REPRESSOR OF GA1-3 1, REPRESSO...		Potri.017G018801 [exp]	10.24	0.9107
AT3G54490		RPB5E	"RNA polymerase II fifth large...		Potri.003G200450 [exp]	10.81	0.8937
AT5G21930		ATHMA8, HMA8, P...	ARABIDOPSIS HEAVY METAL ATPASE...		Potri.006G220150 [exp]	11.22	0.9009
AT4G27220			NB-ARC domain-containing disea...		Potri.018G145558 [exp]	15.00	0.8650
AT5G05800			unknown protein		Potri.008G074066 [exp]	15.87	0.8698
					Potri.014G015400 [exp]	18.73	0.8665

Compare expression of checked genes

Potri.006G199600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.