Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-SPP1.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G35840 632 / 0 Sucrose-6F-phosphate phosphohydrolase family protein (.1.2.3) AT1G51420 561 / 0 ATSPP1 sucrose-phosphatase 1 (.1) AT3G52340 521 / 0 ATSPP2, SPP2 SUCROSE-PHOSPHATASE 2, sucrose-6F-phosphate phosphohydrolase 2 (.1.2.3) AT3G54270 469 / 1e-164 sucrose-6F-phosphate phosphohydrolase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G066100 [exp] 816 / 0 AT2G35840 624 / 0.0 Sucrose-6F-phosphate phosphohydrolase family protein (.1.2.3) Potri.008G013300 [exp] 570 / 0 AT2G35840 547 / 0.0 Sucrose-6F-phosphate phosphohydrolase family protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015995 [exp] 670 / 0 AT2G35840 602 / 0.0 Sucrose-6F-phosphate phosphohydrolase family protein (.1.2.3) Lus10012284 [exp] 666 / 0 AT5G06530 802 / 0.0 Arabidopsis thaliana ATP-binding cassette G22, ATP-binding cassette G22, ABC-2 type transporter family protein (.1.2.3) Lus10005654 [exp] 88 / 4e-21 AT2G35840 79 / 2e-18 Sucrose-6F-phosphate phosphohydrolase family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [poplar] [flax] HAD PF08282 [poplar] [flax] Hydrolase_3 haloacid dehalogenase-like hydrolase CL0137 [poplar] [flax] PF08472 [poplar] [flax] S6PP_C Sucrose-6-phosphate phosphohydrolase C-terminal
Representative CDS sequence Show only first row Show all	>Potri.006G199800.10 pacid=42767526 polypeptide=Potri.006G199800.10.p locus=Potri.006G199800 ID=Potri.006G199800.10.v4.1 annot-version=v4.1 ATGGATAGGCTCAAGGCTCCTGCTCGCCTCATGATAGTTTCGGATCTTGATCACACAATGGTTGATCATCATGATCCCGAGAACATGTCTCTTCTTAGGT TCAATGCCTTATGGGAGGCCTGTTATCGTAATGATTCTCTGCTAGTTTTCTCCACTGGAAGATCACCTACGCTTTATAAGCAGTTGAGAAAAGAGAAACC CATGTTAACACCTGATATAACCATAATGTCTGTGGGAACTGAGATCACGTATGGCACCTCCATGGTGCCTGATGATGGTTGGGTTGAAGTTTTGAATCAG AAATGGGACAGGAACCTAGTCACTGAGGAAACAAGCAAGTTTCCTGAACTTACTCTTCAGTCAGAAACAGAGCAACGGCCTCACAAGGTCAGCTTTTATG TTGATAAAGCCAATGCTCAGAATGTGACGAAGGCGCTATCAGAGATATTTGCAAAACGTGGGTTGGATGTCAAGATAATTTATAGTGGTGGAATGGACCT GGATATACTACCCCAAGGTGCTGGCAAAGGACAAGCTCTTGCGTATTTACATAAGAAGTTTAAGACTGAAGGAAAACTACCTGCCAATACTCTTGTTTGT GGTGATTCTGGAAATGATGCCGAGCTGTTCAGCATTCCAGATGTACATGGAGTGATGGTTAGTAATGCACAAGAAGAGTTGTTGCAGTGGCATGCTGAAA ATGCTAAAGGCAATGCTAAAATAATTCATGCAACCGAGCGGTGTGCAGCTGGGATCATACAAGCTATTGGTCATTTTAAACTTGGTCCCAATACTTCTCC AAGAGATACAACCAACCTTTCATACTTTGAGTCGGAAAACATCAGTGCCAGTAGCGAAATAGTGAGATTTTTCATGTTCTATGAAAGATGGAGGCGTGCA GAGGTTGAAAACTCGGAGCTATATTTGGCAAGCATGAAAGCTGATTGTGATTCATCTGGTATTCTTATCCACCCATCTGGTGCTGAGCTTTCTCTTTGTG ATGCTTTAAATGAAATGAGGAGCTACTATGGTGACAAACAGGGCCAAAAATTTCGAGTTTGGGTGGATCGGGTACTATCCATACAGACTGGTTTGGACAC GTGGCTAGTAAAGTTCAATAAGTGGGAATTATCAGGGGATGAGCAGCAAGGTTGTGTGATCACTTGTATAATAAATATAAAGAAGGATGGTGTTTCTGGG GCAACTTACATGCATGTGCATGAAACTTGGCTGGAAGGATCAGGAGCTAAAGATCAATCAACCTGGCTGTTCTAG
AA sequence Show only first row Show all	>Potri.006G199800.10 pacid=42767526 polypeptide=Potri.006G199800.10.p locus=Potri.006G199800 ID=Potri.006G199800.10.v4.1 annot-version=v4.1 MDRLKAPARLMIVSDLDHTMVDHHDPENMSLLRFNALWEACYRNDSLLVFSTGRSPTLYKQLRKEKPMLTPDITIMSVGTEITYGTSMVPDDGWVEVLNQ KWDRNLVTEETSKFPELTLQSETEQRPHKVSFYVDKANAQNVTKALSEIFAKRGLDVKIIYSGGMDLDILPQGAGKGQALAYLHKKFKTEGKLPANTLVC GDSGNDAELFSIPDVHGVMVSNAQEELLQWHAENAKGNAKIIHATERCAAGIIQAIGHFKLGPNTSPRDTTNLSYFESENISASSEIVRFFMFYERWRRA EVENSELYLASMKADCDSSGILIHPSGAELSLCDALNEMRSYYGDKQGQKFRVWVDRVLSIQTGLDTWLVKFNKWELSGDEQQGCVITCIINIKKDGVSG ATYMHVHETWLEGSGAKDQSTWLF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G35840			Sucrose-6F-phosphate phosphohy...		Potri.006G199800 [exp]	0	1	Pt-SPP1.1
AT5G18140			Chaperone DnaJ-domain superfam...		Potri.013G058100 [exp]	1.73	0.8691
AT1G17650		GR2, GLYR2	glyoxylate reductase 2 (.1)		Potri.003G036600 [exp]	2.82	0.8909
AT1G25290		ATRBL10	RHOMBOID-like protein 10 (.1.2...		Potri.003G019500 [exp]	6.48	0.8555
AT5G24930	CO	COL4, ATCOL4	CONSTANS-like 4 (.1)		Potri.006G267700 [exp]	7.21	0.8685	Pt-COL1.1
AT2G42760			unknown protein		Potri.006G129800 [exp]	13.74	0.8058
AT1G07110		FKFBP, ATF2KP, ...	"fructose-2,6-bisphosphatase",...		Potri.001G279100 [exp]	20.00	0.8740	F2KP.3
AT3G62910		APG3	ALBINO AND PALE GREEN, Peptide...		Potri.014G133400 [exp]	27.27	0.8270	APG3.1
AT1G68830		STN7	STT7 homolog STN7 (.1)		Potri.010G129532 [exp]	29.08	0.8355
AT4G14210		PDE226, PDS3	PIGMENT DEFECTIVE 226, phytoen...		Potri.004G177400 [exp]	29.93	0.8378
AT3G19800			Protein of unknown function (D...		Potri.005G094700 [exp]	30.51	0.8524

Compare expression of checked genes

Potri.006G199800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.